data_5EE7 # _model_server_result.job_id WSTomigIzSodTMb2p-snmQ _model_server_result.datetime_utc '2025-02-16 22:55:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ee7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5EE7 # _exptl.entry_id 5EE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.48 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[[4-[(1~{S})-1-[3-[3,5-bis(chloranyl)phenyl]-5-(6-methoxynaphthalen-2-yl)pyrazol-1-yl]ethyl]phenyl]carbonylamino]propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EE7 _cell.length_a 37.583 _cell.length_b 71.476 _cell.length_c 183.108 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 89 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 224 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 316 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 294 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.02 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C32 H27 Cl2 N3 O4' _chem_comp.formula_weight 588.48 _chem_comp.id 5MV _chem_comp.mon_nstd_flag . _chem_comp.name '3-[[4-[(1~{S})-1-[3-[3,5-bis(chloranyl)phenyl]-5-(6-methoxynaphthalen-2-yl)pyrazol-1-yl]ethyl]phenyl]carbonylamino]propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C3 5MV sing 1 n n C3 C2 5MV doub 2 n y C3 C4 5MV sing 3 n y C2 C1 5MV sing 4 n y C4 C5 5MV doub 5 n y C32 C20 5MV sing 6 n n C1 C7 5MV sing 7 n n C1 C6 5MV doub 8 n y N1 C7 5MV doub 9 n y N1 N2 5MV sing 10 n y C5 C6 5MV sing 11 n y C5 CL2 5MV sing 12 n n C7 C8 5MV sing 13 n y C20 N2 5MV sing 14 n n C20 C24 5MV sing 15 n n N2 C9 5MV sing 16 n y C8 C9 5MV doub 17 n y C9 C12 5MV sing 18 n n C24 C23 5MV doub 19 n y C24 C25 5MV sing 20 n y C23 C22 5MV sing 21 n y C25 C26 5MV doub 22 n y C13 C12 5MV doub 23 n y C13 C14 5MV sing 24 n y C12 C11 5MV sing 25 n y C19 C14 5MV doub 26 n y C19 C18 5MV sing 27 n y C22 C21 5MV doub 28 n y C26 C21 5MV sing 29 n y C14 C15 5MV sing 30 n y C21 C28 5MV sing 31 n n C11 C10 5MV doub 32 n y C18 C17 5MV doub 33 n y C15 C10 5MV sing 34 n y C15 C16 5MV doub 35 n y C28 N3 5MV sing 36 n n C28 O2 5MV doub 37 n n N3 C29 5MV sing 38 n n C17 C16 5MV sing 39 n y C17 O1 5MV sing 40 n n C29 C30 5MV sing 41 n n O1 C27 5MV sing 42 n n C30 C31 5MV sing 43 n n O4 C31 5MV doub 44 n n C31 O3 5MV sing 45 n n N3 H1 5MV sing 46 n n C4 H2 5MV sing 47 n n C6 H3 5MV sing 48 n n C8 H4 5MV sing 49 n n C10 H5 5MV sing 50 n n C13 H6 5MV sing 51 n n C20 H7 5MV sing 52 n n C22 H8 5MV sing 53 n n C26 H9 5MV sing 54 n n C2 H10 5MV sing 55 n n C11 H11 5MV sing 56 n n C16 H12 5MV sing 57 n n C18 H13 5MV sing 58 n n C19 H14 5MV sing 59 n n C25 H15 5MV sing 60 n n C27 H16 5MV sing 61 n n C27 H17 5MV sing 62 n n C27 H18 5MV sing 63 n n C29 H19 5MV sing 64 n n C29 H20 5MV sing 65 n n C30 H21 5MV sing 66 n n C30 H22 5MV sing 67 n n O3 H23 5MV sing 68 n n C32 H24 5MV sing 69 n n C32 H25 5MV sing 70 n n C32 H26 5MV sing 71 n n C23 H27 5MV sing 72 n n # _atom_sites.entry_id 5EE7 _atom_sites.fract_transf_matrix[1][1] 0.026608 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5MV A 1 1201 901 5MV LIG . C 3 OLA A 1 1202 1 OLA OLA . D 3 OLA A 1 1203 2 OLA OLA . E 3 OLA A 1 1204 4 OLA OLA . F 3 OLA A 1 1205 5 OLA OLA . G 3 OLA A 1 1206 6 OLA OLA . H 3 OLA A 1 1207 7 OLA OLA . I 3 OLA A 1 1208 8 OLA OLA . J 3 OLA A 1 1209 9 OLA OLA . K 3 OLA A 1 1210 10 OLA OLA . L 3 OLA A 1 1211 11 OLA OLA . M 3 OLA A 1 1212 12 OLA OLA . N 3 OLA A 1 1213 13 OLA OLA . O 3 OLA A 1 1214 14 OLA OLA . P 3 OLA A 1 1215 15 OLA OLA . Q 4 PE5 A 1 1216 1 PE5 PE5 . R 5 TLA A 1 1217 1 TLA TLA . S 6 HOH A 1 1301 13 HOH HOH . S 6 HOH A 2 1302 5 HOH HOH . S 6 HOH A 3 1303 18 HOH HOH . S 6 HOH A 4 1304 20 HOH HOH . S 6 HOH A 5 1305 1 HOH HOH . S 6 HOH A 6 1306 23 HOH HOH . S 6 HOH A 7 1307 2 HOH HOH . S 6 HOH A 8 1308 3 HOH HOH . S 6 HOH A 9 1309 4 HOH HOH . S 6 HOH A 10 1310 7 HOH HOH . S 6 HOH A 11 1311 17 HOH HOH . S 6 HOH A 12 1312 19 HOH HOH . S 6 HOH A 13 1313 16 HOH HOH . S 6 HOH A 14 1314 11 HOH HOH . S 6 HOH A 15 1315 9 HOH HOH . S 6 HOH A 16 1316 15 HOH HOH . S 6 HOH A 17 1317 10 HOH HOH . S 6 HOH A 18 1318 24 HOH HOH . S 6 HOH A 19 1319 22 HOH HOH . S 6 HOH A 20 1320 6 HOH HOH . S 6 HOH A 21 1321 14 HOH HOH . S 6 HOH A 22 1322 12 HOH HOH . S 6 HOH A 23 1323 21 HOH HOH . S 6 HOH A 24 1324 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 5MV . . . B 2 -32.082 1.694 -39.704 1 30.54 ? N1 5MV 1201 A 1 HETATM 2 N N3 5MV . . . B 2 -27.299 5.977 -34.706 1 33.62 ? N3 5MV 1201 A 1 HETATM 3 C C4 5MV . . . B 2 -37.051 1.811 -41.03 1 45.65 ? C4 5MV 1201 A 1 HETATM 4 C C5 5MV . . . B 2 -36.922 1.255 -39.75 1 52.06 ? C5 5MV 1201 A 1 HETATM 5 C C6 5MV . . . B 2 -35.645 1.017 -39.211 1 49.37 ? C6 5MV 1201 A 1 HETATM 6 C C7 5MV . . . B 2 -33.172 1.056 -39.321 1 46.35 ? C7 5MV 1201 A 1 HETATM 7 C C8 5MV . . . B 2 -32.892 0.139 -38.272 1 42.58 ? C8 5MV 1201 A 1 HETATM 8 C C10 5MV . . . B 2 -30.455 -1.139 -34.686 1 31.57 ? C10 5MV 1201 A 1 HETATM 9 C C13 5MV . . . B 2 -29.554 -1.157 -37.361 1 33.53 ? C13 5MV 1201 A 1 HETATM 10 C C15 5MV . . . B 2 -29.275 -1.818 -35.01 1 38.07 ? C15 5MV 1201 A 1 HETATM 11 C C17 5MV . . . B 2 -27.355 -3.176 -34.307 1 37.47 ? C17 5MV 1201 A 1 HETATM 12 C C20 5MV . . . B 2 -29.732 1.748 -39.114 1 32.9 ? C20 5MV 1201 A 1 HETATM 13 C C21 5MV . . . B 2 -28.907 4.7 -35.99 1 35.31 ? C21 5MV 1201 A 1 HETATM 14 C C22 5MV . . . B 2 -27.866 3.962 -36.582 1 30.42 ? C22 5MV 1201 A 1 HETATM 15 C C24 5MV . . . B 2 -29.469 2.8 -38.022 1 33.49 ? C24 5MV 1201 A 1 HETATM 16 C C26 5MV . . . B 2 -30.237 4.487 -36.406 1 33.24 ? C26 5MV 1201 A 1 HETATM 17 C C28 5MV . . . B 2 -28.587 5.69 -34.922 1 36.57 ? C28 5MV 1201 A 1 HETATM 18 C C1 5MV . . . B 2 -34.477 1.325 -39.941 1 49.39 ? C1 5MV 1201 A 1 HETATM 19 C C2 5MV . . . B 2 -34.615 1.892 -41.23 1 45.63 ? C2 5MV 1201 A 1 HETATM 20 C C3 5MV . . . B 2 -35.896 2.128 -41.765 1 49.55 ? C3 5MV 1201 A 1 HETATM 21 CL CL1 5MV . . . B 2 -36.069 2.808 -43.336 1 63.95 ? CL1 5MV 1201 A 1 HETATM 22 CL CL2 5MV . . . B 2 -38.327 0.863 -38.834 1 54.78 ? CL2 5MV 1201 A 1 HETATM 23 C C9 5MV . . . B 2 -31.554 0.251 -38.039 1 39 ? C9 5MV 1201 A 1 HETATM 24 C C11 5MV . . . B 2 -31.168 -0.481 -35.693 1 28.66 ? C11 5MV 1201 A 1 HETATM 25 C C12 5MV . . . B 2 -30.747 -0.471 -37.04 1 40.14 ? C12 5MV 1201 A 1 HETATM 26 C C14 5MV . . . B 2 -28.822 -1.829 -36.351 1 32.78 ? C14 5MV 1201 A 1 HETATM 27 C C16 5MV . . . B 2 -28.551 -2.483 -33.999 1 39.37 ? C16 5MV 1201 A 1 HETATM 28 C C18 5MV . . . B 2 -26.911 -3.182 -35.644 1 40.95 ? C18 5MV 1201 A 1 HETATM 29 C C19 5MV . . . B 2 -27.634 -2.519 -36.655 1 39.19 ? C19 5MV 1201 A 1 HETATM 30 C C25 5MV . . . B 2 -30.515 3.541 -37.412 1 27.97 ? C25 5MV 1201 A 1 HETATM 31 N N2 5MV . . . B 2 -31.079 1.209 -38.933 1 37.39 ? N2 5MV 1201 A 1 HETATM 32 O O1 5MV . . . B 2 -26.595 -3.849 -33.375 1 33.35 ? O1 5MV 1201 A 1 HETATM 33 C C27 5MV . . . B 2 -26.664 -3.397 -32.029 1 34.16 ? C27 5MV 1201 A 1 HETATM 34 O O2 5MV . . . B 2 -29.506 6.193 -34.285 1 42.74 ? O2 5MV 1201 A 1 HETATM 35 C C29 5MV . . . B 2 -26.857 6.918 -33.687 1 30.64 ? C29 5MV 1201 A 1 HETATM 36 C C30 5MV . . . B 2 -27.071 6.381 -32.263 1 39.58 ? C30 5MV 1201 A 1 HETATM 37 C C31 5MV . . . B 2 -26.552 7.362 -31.221 1 41.57 ? C31 5MV 1201 A 1 HETATM 38 O O3 5MV . . . B 2 -27.349 7.765 -30.348 1 45.68 ? O3 5MV 1201 A 1 HETATM 39 O O4 5MV . . . B 2 -25.348 7.705 -31.301 1 36.34 ? O4 5MV 1201 A 1 HETATM 40 C C32 5MV . . . B 2 -29.592 2.354 -40.524 1 24.77 ? C32 5MV 1201 A 1 HETATM 41 C C23 5MV . . . B 2 -28.145 3.021 -37.585 1 27.55 ? C23 5MV 1201 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #