data_5EEF # _model_server_result.job_id Jc0-1TQEe7XXstXM5tX68A _model_server_result.datetime_utc '2024-11-27 23:59:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eef # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":2002}' # _entry.id 5EEF # _exptl.entry_id 5EEF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 302.368 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRICHOSTATIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.85 _cell.angle_gamma 90 _cell.entry_id 5EEF _cell.length_a 52.876 _cell.length_b 123.717 _cell.length_c 55.186 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EEF _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 177 A ASP 230 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A ND1 HIS 179 A HIS 232 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc3 A OD2 ASP 270 A ASP 323 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 C ZN ZN . A ZN 2001 1_555 D O2 TSN . A TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc5 C ZN ZN . A ZN 2001 1_555 D N1 TSN . A TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc6 C ZN ZN . A ZN 2001 1_555 D O1 TSN . A TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? metalc ? metalc7 B OD1 ASP 177 B ASP 230 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc8 B OD2 ASP 177 B ASP 230 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc9 B ND1 HIS 179 B HIS 232 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc10 B OD2 ASP 270 B ASP 323 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc11 I ZN ZN . B ZN 2001 1_555 J O1 TSN . B TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc12 I ZN ZN . B ZN 2001 1_555 J O2 TSN . B TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'C17 H22 N2 O3' _chem_comp.formula_weight 302.368 _chem_comp.id TSN _chem_comp.mon_nstd_flag . _chem_comp.name 'TRICHOSTATIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7-[4-(DIMETHYLAMINO)PHENYL]-N-HYDROXY-4,6-DIMETHYL-7-OXO-2,4-HEPTADIENAMIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 N1 TSN sing 351 n n O1 HO1 TSN sing 352 n n O2 C13 TSN doub 353 n n O3 C7 TSN doub 354 n n N1 C13 TSN sing 355 n n N1 HN1 TSN sing 356 n n N2 C4 TSN sing 357 n n N2 C17 TSN sing 358 n n N2 C16 TSN sing 359 n n C1 C2 TSN doub 360 n y C1 C6 TSN sing 361 n y C1 C7 TSN sing 362 n n C2 C3 TSN sing 363 n y C2 H21 TSN sing 364 n n C3 C4 TSN doub 365 n y C3 H31 TSN sing 366 n n C4 C5 TSN sing 367 n y C5 C6 TSN doub 368 n y C5 H51 TSN sing 369 n n C6 H61 TSN sing 370 n n C7 C8 TSN sing 371 n n C8 C9 TSN sing 372 n n C8 C14 TSN sing 373 n n C8 H8 TSN sing 374 n n C9 C10 TSN doub 375 e n C9 H9 TSN sing 376 n n C10 C11 TSN sing 377 n n C10 C15 TSN sing 378 n n C11 C12 TSN doub 379 e n C11 H111 TSN sing 380 n n C12 C13 TSN sing 381 n n C12 H121 TSN sing 382 n n C14 H141 TSN sing 383 n n C14 H142 TSN sing 384 n n C14 H143 TSN sing 385 n n C15 H151 TSN sing 386 n n C15 H152 TSN sing 387 n n C15 H153 TSN sing 388 n n C17 H171 TSN sing 389 n n C17 H172 TSN sing 390 n n C17 H173 TSN sing 391 n n C16 H161 TSN sing 392 n n C16 H162 TSN sing 393 n n C16 H163 TSN sing 394 n n # _atom_sites.entry_id 5EEF _atom_sites.fract_transf_matrix[1][1] 0.018912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008361 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019813 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2001 2001 ZN ZN . D 3 TSN A 1 2002 2501 TSN TSN . E 4 NH4 A 1 2003 2091 NH4 NH4 . F 4 NH4 A 1 2004 2092 NH4 NH4 . G 5 SO4 A 1 2005 1 SO4 SO4 . H 6 EDO A 1 2006 402 EDO EDO . I 2 ZN B 1 2001 2001 ZN ZN . J 3 TSN B 1 2002 2501 TSN TSN . K 4 NH4 B 1 2003 2093 NH4 NH4 . L 4 NH4 B 1 2004 2094 NH4 NH4 . M 6 EDO B 1 2005 401 EDO EDO . N 7 HOH A 1 2101 187 HOH HOH . N 7 HOH A 2 2102 158 HOH HOH . N 7 HOH A 3 2103 68 HOH HOH . N 7 HOH A 4 2104 171 HOH HOH . N 7 HOH A 5 2105 125 HOH HOH . N 7 HOH A 6 2106 94 HOH HOH . N 7 HOH A 7 2107 136 HOH HOH . N 7 HOH A 8 2108 168 HOH HOH . N 7 HOH A 9 2109 186 HOH HOH . N 7 HOH A 10 2110 46 HOH HOH . N 7 HOH A 11 2111 224 HOH HOH . N 7 HOH A 12 2112 188 HOH HOH . N 7 HOH A 13 2113 38 HOH HOH . N 7 HOH A 14 2114 233 HOH HOH . N 7 HOH A 15 2115 155 HOH HOH . N 7 HOH A 16 2116 210 HOH HOH . N 7 HOH A 17 2117 83 HOH HOH . N 7 HOH A 18 2118 228 HOH HOH . N 7 HOH A 19 2119 93 HOH HOH . N 7 HOH A 20 2120 162 HOH HOH . N 7 HOH A 21 2121 47 HOH HOH . N 7 HOH A 22 2122 79 HOH HOH . N 7 HOH A 23 2123 189 HOH HOH . N 7 HOH A 24 2124 88 HOH HOH . N 7 HOH A 25 2125 92 HOH HOH . N 7 HOH A 26 2126 35 HOH HOH . N 7 HOH A 27 2127 207 HOH HOH . N 7 HOH A 28 2128 164 HOH HOH . N 7 HOH A 29 2129 1 HOH HOH . N 7 HOH A 30 2130 229 HOH HOH . N 7 HOH A 31 2131 9 HOH HOH . N 7 HOH A 32 2132 33 HOH HOH . N 7 HOH A 33 2133 74 HOH HOH . N 7 HOH A 34 2134 17 HOH HOH . N 7 HOH A 35 2135 40 HOH HOH . N 7 HOH A 36 2136 49 HOH HOH . N 7 HOH A 37 2137 166 HOH HOH . N 7 HOH A 38 2138 148 HOH HOH . N 7 HOH A 39 2139 108 HOH HOH . N 7 HOH A 40 2140 15 HOH HOH . N 7 HOH A 41 2141 139 HOH HOH . N 7 HOH A 42 2142 184 HOH HOH . N 7 HOH A 43 2143 128 HOH HOH . N 7 HOH A 44 2144 195 HOH HOH . N 7 HOH A 45 2145 141 HOH HOH . N 7 HOH A 46 2146 76 HOH HOH . N 7 HOH A 47 2147 110 HOH HOH . N 7 HOH A 48 2148 71 HOH HOH . N 7 HOH A 49 2149 41 HOH HOH . N 7 HOH A 50 2150 12 HOH HOH . N 7 HOH A 51 2151 181 HOH HOH . N 7 HOH A 52 2152 53 HOH HOH . N 7 HOH A 53 2153 61 HOH HOH . N 7 HOH A 54 2154 91 HOH HOH . N 7 HOH A 55 2155 193 HOH HOH . N 7 HOH A 56 2156 56 HOH HOH . N 7 HOH A 57 2157 118 HOH HOH . N 7 HOH A 58 2158 190 HOH HOH . N 7 HOH A 59 2159 97 HOH HOH . N 7 HOH A 60 2160 73 HOH HOH . N 7 HOH A 61 2161 183 HOH HOH . N 7 HOH A 62 2162 144 HOH HOH . N 7 HOH A 63 2163 72 HOH HOH . N 7 HOH A 64 2164 95 HOH HOH . N 7 HOH A 65 2165 142 HOH HOH . N 7 HOH A 66 2166 161 HOH HOH . N 7 HOH A 67 2167 101 HOH HOH . N 7 HOH A 68 2168 120 HOH HOH . N 7 HOH A 69 2169 86 HOH HOH . N 7 HOH A 70 2170 227 HOH HOH . N 7 HOH A 71 2171 169 HOH HOH . N 7 HOH A 72 2172 182 HOH HOH . N 7 HOH A 73 2173 163 HOH HOH . N 7 HOH A 74 2174 167 HOH HOH . N 7 HOH A 75 2175 185 HOH HOH . N 7 HOH A 76 2176 75 HOH HOH . N 7 HOH A 77 2177 176 HOH HOH . N 7 HOH A 78 2178 220 HOH HOH . N 7 HOH A 79 2179 222 HOH HOH . N 7 HOH A 80 2180 231 HOH HOH . O 7 HOH B 1 2101 60 HOH HOH . O 7 HOH B 2 2102 178 HOH HOH . O 7 HOH B 3 2103 205 HOH HOH . O 7 HOH B 4 2104 34 HOH HOH . O 7 HOH B 5 2105 78 HOH HOH . O 7 HOH B 6 2106 30 HOH HOH . O 7 HOH B 7 2107 29 HOH HOH . O 7 HOH B 8 2108 57 HOH HOH . O 7 HOH B 9 2109 179 HOH HOH . O 7 HOH B 10 2110 198 HOH HOH . O 7 HOH B 11 2111 180 HOH HOH . O 7 HOH B 12 2112 130 HOH HOH . O 7 HOH B 13 2113 23 HOH HOH . O 7 HOH B 14 2114 6 HOH HOH . O 7 HOH B 15 2115 59 HOH HOH . O 7 HOH B 16 2116 225 HOH HOH . O 7 HOH B 17 2117 20 HOH HOH . O 7 HOH B 18 2118 66 HOH HOH . O 7 HOH B 19 2119 112 HOH HOH . O 7 HOH B 20 2120 3 HOH HOH . O 7 HOH B 21 2121 96 HOH HOH . O 7 HOH B 22 2122 200 HOH HOH . O 7 HOH B 23 2123 50 HOH HOH . O 7 HOH B 24 2124 209 HOH HOH . O 7 HOH B 25 2125 43 HOH HOH . O 7 HOH B 26 2126 99 HOH HOH . O 7 HOH B 27 2127 219 HOH HOH . O 7 HOH B 28 2128 90 HOH HOH . O 7 HOH B 29 2129 13 HOH HOH . O 7 HOH B 30 2130 206 HOH HOH . O 7 HOH B 31 2131 204 HOH HOH . O 7 HOH B 32 2132 48 HOH HOH . O 7 HOH B 33 2133 129 HOH HOH . O 7 HOH B 34 2134 70 HOH HOH . O 7 HOH B 35 2135 196 HOH HOH . O 7 HOH B 36 2136 211 HOH HOH . O 7 HOH B 37 2137 191 HOH HOH . O 7 HOH B 38 2138 84 HOH HOH . O 7 HOH B 39 2139 11 HOH HOH . O 7 HOH B 40 2140 174 HOH HOH . O 7 HOH B 41 2141 135 HOH HOH . O 7 HOH B 42 2142 105 HOH HOH . O 7 HOH B 43 2143 14 HOH HOH . O 7 HOH B 44 2144 217 HOH HOH . O 7 HOH B 45 2145 123 HOH HOH . O 7 HOH B 46 2146 26 HOH HOH . O 7 HOH B 47 2147 39 HOH HOH . O 7 HOH B 48 2148 175 HOH HOH . O 7 HOH B 49 2149 173 HOH HOH . O 7 HOH B 50 2150 98 HOH HOH . O 7 HOH B 51 2151 27 HOH HOH . O 7 HOH B 52 2152 104 HOH HOH . O 7 HOH B 53 2153 42 HOH HOH . O 7 HOH B 54 2154 54 HOH HOH . O 7 HOH B 55 2155 32 HOH HOH . O 7 HOH B 56 2156 36 HOH HOH . O 7 HOH B 57 2157 19 HOH HOH . O 7 HOH B 58 2158 218 HOH HOH . O 7 HOH B 59 2159 197 HOH HOH . O 7 HOH B 60 2160 214 HOH HOH . O 7 HOH B 61 2161 201 HOH HOH . O 7 HOH B 62 2162 109 HOH HOH . O 7 HOH B 63 2163 177 HOH HOH . O 7 HOH B 64 2164 124 HOH HOH . O 7 HOH B 65 2165 159 HOH HOH . O 7 HOH B 66 2166 44 HOH HOH . O 7 HOH B 67 2167 122 HOH HOH . O 7 HOH B 68 2168 69 HOH HOH . O 7 HOH B 69 2169 226 HOH HOH . O 7 HOH B 70 2170 216 HOH HOH . O 7 HOH B 71 2171 208 HOH HOH . O 7 HOH B 72 2172 215 HOH HOH . O 7 HOH B 73 2173 77 HOH HOH . O 7 HOH B 74 2174 212 HOH HOH . O 7 HOH B 75 2175 203 HOH HOH . O 7 HOH B 76 2176 230 HOH HOH . O 7 HOH B 77 2177 223 HOH HOH . O 7 HOH B 78 2178 232 HOH HOH . O 7 HOH B 79 2179 202 HOH HOH . O 7 HOH B 80 2180 172 HOH HOH . O 7 HOH B 81 2181 221 HOH HOH . O 7 HOH B 82 2182 192 HOH HOH . O 7 HOH B 83 2183 111 HOH HOH . O 7 HOH B 84 2184 170 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 TSN . . . J 3 -0.999 10.632 -24.242 1 27.49 ? O1 TSN 2002 B 1 HETATM 2 O O2 TSN . . . J 3 -1.893 12.971 -23.184 1 27.42 ? O2 TSN 2002 B 1 HETATM 3 O O3 TSN . . . J 3 -3.59 19.777 -24.52 1 35.46 ? O3 TSN 2002 B 1 HETATM 4 N N1 TSN . . . J 3 -0.959 11.862 -24.892 1 27.38 ? N1 TSN 2002 B 1 HETATM 5 N N2 TSN . . . J 3 -0.012 24.423 -26.953 1 40.23 ? N2 TSN 2002 B 1 HETATM 6 C C1 TSN . . . J 3 -2.172 21.044 -25.919 1 38.09 ? C1 TSN 2002 B 1 HETATM 7 C C2 TSN . . . J 3 -2.175 22.151 -25.077 1 38.93 ? C2 TSN 2002 B 1 HETATM 8 C C3 TSN . . . J 3 -1.449 23.288 -25.423 1 39.47 ? C3 TSN 2002 B 1 HETATM 9 C C4 TSN . . . J 3 -0.721 23.317 -26.609 1 40 ? C4 TSN 2002 B 1 HETATM 10 C C5 TSN . . . J 3 -0.718 22.207 -27.447 1 39.95 ? C5 TSN 2002 B 1 HETATM 11 C C6 TSN . . . J 3 -1.443 21.073 -27.1 1 39.2 ? C6 TSN 2002 B 1 HETATM 12 C C7 TSN . . . J 3 -2.949 19.813 -25.557 1 36.11 ? C7 TSN 2002 B 1 HETATM 13 C C8 TSN . . . J 3 -2.92 18.625 -26.477 1 34.95 ? C8 TSN 2002 B 1 HETATM 14 C C9 TSN . . . J 3 -3.006 17.356 -25.659 1 33.29 ? C9 TSN 2002 B 1 HETATM 15 C C10 TSN . . . J 3 -2.238 16.293 -25.945 1 31.11 ? C10 TSN 2002 B 1 HETATM 16 C C11 TSN . . . J 3 -2.341 15.062 -25.138 1 29.36 ? C11 TSN 2002 B 1 HETATM 17 C C12 TSN . . . J 3 -1.322 14.206 -25.101 1 28.63 ? C12 TSN 2002 B 1 HETATM 18 C C13 TSN . . . J 3 -1.421 12.963 -24.309 1 27.77 ? C13 TSN 2002 B 1 HETATM 19 C C14 TSN . . . J 3 -4.098 18.684 -27.443 1 35.35 ? C14 TSN 2002 B 1 HETATM 20 C C15 TSN . . . J 3 -1.273 16.34 -27.093 1 30.87 ? C15 TSN 2002 B 1 HETATM 21 C C17 TSN . . . J 3 -0.008 25.592 -26.085 1 40.41 ? C17 TSN 2002 B 1 HETATM 22 C C16 TSN . . . J 3 0.748 24.442 -28.194 1 40.2 ? C16 TSN 2002 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 469 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #