data_5EEF
#
_model_server_result.job_id            R6iwxrU84zzehOMdVTR3IQ 
_model_server_result.datetime_utc      '2024-11-24 06:24:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eef 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":2005}' 
#
_entry.id    5EEF 
#
_exptl.entry_id    5EEF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.85 
_cell.angle_gamma         90 
_cell.entry_id            5EEF 
_cell.length_a            52.876 
_cell.length_b            123.717 
_cell.length_c            55.186 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EEF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,N 1 1 
B,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 177 A ASP 230 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc2 A ND1 HIS 179 A HIS 232 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
metalc ? metalc3 A OD2 ASP 270 A ASP 323 1_555 C ZN ZN . A ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc4 C ZN ZN . A ZN 2001 1_555 D O2 TSN . A TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc5 C ZN ZN . A ZN 2001 1_555 D N1 TSN . A TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc6 C ZN ZN . A ZN 2001 1_555 D O1 TSN . A TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc7 B OD1 ASP 177 B ASP 230 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc8 B OD2 ASP 177 B ASP 230 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc9 B ND1 HIS 179 B HIS 232 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
metalc ? metalc10 B OD2 ASP 270 B ASP 323 1_555 I ZN ZN . B ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc11 I ZN ZN . B ZN 2001 1_555 J O1 TSN . B TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
metalc ? metalc12 I ZN ZN . B ZN 2001 1_555 J O2 TSN . B TSN 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5EEF 
_atom_sites.fract_transf_matrix[1][1]    0.018912 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008361 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019813 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 2001 2001 ZN ZN . 
D 3 TSN A 1 2002 2501 TSN TSN . 
E 4 NH4 A 1 2003 2091 NH4 NH4 . 
F 4 NH4 A 1 2004 2092 NH4 NH4 . 
G 5 SO4 A 1 2005 1 SO4 SO4 . 
H 6 EDO A 1 2006 402 EDO EDO . 
I 2 ZN B 1 2001 2001 ZN ZN . 
J 3 TSN B 1 2002 2501 TSN TSN . 
K 4 NH4 B 1 2003 2093 NH4 NH4 . 
L 4 NH4 B 1 2004 2094 NH4 NH4 . 
M 6 EDO B 1 2005 401 EDO EDO . 
N 7 HOH A 1 2101 187 HOH HOH . 
N 7 HOH A 2 2102 158 HOH HOH . 
N 7 HOH A 3 2103 68 HOH HOH . 
N 7 HOH A 4 2104 171 HOH HOH . 
N 7 HOH A 5 2105 125 HOH HOH . 
N 7 HOH A 6 2106 94 HOH HOH . 
N 7 HOH A 7 2107 136 HOH HOH . 
N 7 HOH A 8 2108 168 HOH HOH . 
N 7 HOH A 9 2109 186 HOH HOH . 
N 7 HOH A 10 2110 46 HOH HOH . 
N 7 HOH A 11 2111 224 HOH HOH . 
N 7 HOH A 12 2112 188 HOH HOH . 
N 7 HOH A 13 2113 38 HOH HOH . 
N 7 HOH A 14 2114 233 HOH HOH . 
N 7 HOH A 15 2115 155 HOH HOH . 
N 7 HOH A 16 2116 210 HOH HOH . 
N 7 HOH A 17 2117 83 HOH HOH . 
N 7 HOH A 18 2118 228 HOH HOH . 
N 7 HOH A 19 2119 93 HOH HOH . 
N 7 HOH A 20 2120 162 HOH HOH . 
N 7 HOH A 21 2121 47 HOH HOH . 
N 7 HOH A 22 2122 79 HOH HOH . 
N 7 HOH A 23 2123 189 HOH HOH . 
N 7 HOH A 24 2124 88 HOH HOH . 
N 7 HOH A 25 2125 92 HOH HOH . 
N 7 HOH A 26 2126 35 HOH HOH . 
N 7 HOH A 27 2127 207 HOH HOH . 
N 7 HOH A 28 2128 164 HOH HOH . 
N 7 HOH A 29 2129 1 HOH HOH . 
N 7 HOH A 30 2130 229 HOH HOH . 
N 7 HOH A 31 2131 9 HOH HOH . 
N 7 HOH A 32 2132 33 HOH HOH . 
N 7 HOH A 33 2133 74 HOH HOH . 
N 7 HOH A 34 2134 17 HOH HOH . 
N 7 HOH A 35 2135 40 HOH HOH . 
N 7 HOH A 36 2136 49 HOH HOH . 
N 7 HOH A 37 2137 166 HOH HOH . 
N 7 HOH A 38 2138 148 HOH HOH . 
N 7 HOH A 39 2139 108 HOH HOH . 
N 7 HOH A 40 2140 15 HOH HOH . 
N 7 HOH A 41 2141 139 HOH HOH . 
N 7 HOH A 42 2142 184 HOH HOH . 
N 7 HOH A 43 2143 128 HOH HOH . 
N 7 HOH A 44 2144 195 HOH HOH . 
N 7 HOH A 45 2145 141 HOH HOH . 
N 7 HOH A 46 2146 76 HOH HOH . 
N 7 HOH A 47 2147 110 HOH HOH . 
N 7 HOH A 48 2148 71 HOH HOH . 
N 7 HOH A 49 2149 41 HOH HOH . 
N 7 HOH A 50 2150 12 HOH HOH . 
N 7 HOH A 51 2151 181 HOH HOH . 
N 7 HOH A 52 2152 53 HOH HOH . 
N 7 HOH A 53 2153 61 HOH HOH . 
N 7 HOH A 54 2154 91 HOH HOH . 
N 7 HOH A 55 2155 193 HOH HOH . 
N 7 HOH A 56 2156 56 HOH HOH . 
N 7 HOH A 57 2157 118 HOH HOH . 
N 7 HOH A 58 2158 190 HOH HOH . 
N 7 HOH A 59 2159 97 HOH HOH . 
N 7 HOH A 60 2160 73 HOH HOH . 
N 7 HOH A 61 2161 183 HOH HOH . 
N 7 HOH A 62 2162 144 HOH HOH . 
N 7 HOH A 63 2163 72 HOH HOH . 
N 7 HOH A 64 2164 95 HOH HOH . 
N 7 HOH A 65 2165 142 HOH HOH . 
N 7 HOH A 66 2166 161 HOH HOH . 
N 7 HOH A 67 2167 101 HOH HOH . 
N 7 HOH A 68 2168 120 HOH HOH . 
N 7 HOH A 69 2169 86 HOH HOH . 
N 7 HOH A 70 2170 227 HOH HOH . 
N 7 HOH A 71 2171 169 HOH HOH . 
N 7 HOH A 72 2172 182 HOH HOH . 
N 7 HOH A 73 2173 163 HOH HOH . 
N 7 HOH A 74 2174 167 HOH HOH . 
N 7 HOH A 75 2175 185 HOH HOH . 
N 7 HOH A 76 2176 75 HOH HOH . 
N 7 HOH A 77 2177 176 HOH HOH . 
N 7 HOH A 78 2178 220 HOH HOH . 
N 7 HOH A 79 2179 222 HOH HOH . 
N 7 HOH A 80 2180 231 HOH HOH . 
O 7 HOH B 1 2101 60 HOH HOH . 
O 7 HOH B 2 2102 178 HOH HOH . 
O 7 HOH B 3 2103 205 HOH HOH . 
O 7 HOH B 4 2104 34 HOH HOH . 
O 7 HOH B 5 2105 78 HOH HOH . 
O 7 HOH B 6 2106 30 HOH HOH . 
O 7 HOH B 7 2107 29 HOH HOH . 
O 7 HOH B 8 2108 57 HOH HOH . 
O 7 HOH B 9 2109 179 HOH HOH . 
O 7 HOH B 10 2110 198 HOH HOH . 
O 7 HOH B 11 2111 180 HOH HOH . 
O 7 HOH B 12 2112 130 HOH HOH . 
O 7 HOH B 13 2113 23 HOH HOH . 
O 7 HOH B 14 2114 6 HOH HOH . 
O 7 HOH B 15 2115 59 HOH HOH . 
O 7 HOH B 16 2116 225 HOH HOH . 
O 7 HOH B 17 2117 20 HOH HOH . 
O 7 HOH B 18 2118 66 HOH HOH . 
O 7 HOH B 19 2119 112 HOH HOH . 
O 7 HOH B 20 2120 3 HOH HOH . 
O 7 HOH B 21 2121 96 HOH HOH . 
O 7 HOH B 22 2122 200 HOH HOH . 
O 7 HOH B 23 2123 50 HOH HOH . 
O 7 HOH B 24 2124 209 HOH HOH . 
O 7 HOH B 25 2125 43 HOH HOH . 
O 7 HOH B 26 2126 99 HOH HOH . 
O 7 HOH B 27 2127 219 HOH HOH . 
O 7 HOH B 28 2128 90 HOH HOH . 
O 7 HOH B 29 2129 13 HOH HOH . 
O 7 HOH B 30 2130 206 HOH HOH . 
O 7 HOH B 31 2131 204 HOH HOH . 
O 7 HOH B 32 2132 48 HOH HOH . 
O 7 HOH B 33 2133 129 HOH HOH . 
O 7 HOH B 34 2134 70 HOH HOH . 
O 7 HOH B 35 2135 196 HOH HOH . 
O 7 HOH B 36 2136 211 HOH HOH . 
O 7 HOH B 37 2137 191 HOH HOH . 
O 7 HOH B 38 2138 84 HOH HOH . 
O 7 HOH B 39 2139 11 HOH HOH . 
O 7 HOH B 40 2140 174 HOH HOH . 
O 7 HOH B 41 2141 135 HOH HOH . 
O 7 HOH B 42 2142 105 HOH HOH . 
O 7 HOH B 43 2143 14 HOH HOH . 
O 7 HOH B 44 2144 217 HOH HOH . 
O 7 HOH B 45 2145 123 HOH HOH . 
O 7 HOH B 46 2146 26 HOH HOH . 
O 7 HOH B 47 2147 39 HOH HOH . 
O 7 HOH B 48 2148 175 HOH HOH . 
O 7 HOH B 49 2149 173 HOH HOH . 
O 7 HOH B 50 2150 98 HOH HOH . 
O 7 HOH B 51 2151 27 HOH HOH . 
O 7 HOH B 52 2152 104 HOH HOH . 
O 7 HOH B 53 2153 42 HOH HOH . 
O 7 HOH B 54 2154 54 HOH HOH . 
O 7 HOH B 55 2155 32 HOH HOH . 
O 7 HOH B 56 2156 36 HOH HOH . 
O 7 HOH B 57 2157 19 HOH HOH . 
O 7 HOH B 58 2158 218 HOH HOH . 
O 7 HOH B 59 2159 197 HOH HOH . 
O 7 HOH B 60 2160 214 HOH HOH . 
O 7 HOH B 61 2161 201 HOH HOH . 
O 7 HOH B 62 2162 109 HOH HOH . 
O 7 HOH B 63 2163 177 HOH HOH . 
O 7 HOH B 64 2164 124 HOH HOH . 
O 7 HOH B 65 2165 159 HOH HOH . 
O 7 HOH B 66 2166 44 HOH HOH . 
O 7 HOH B 67 2167 122 HOH HOH . 
O 7 HOH B 68 2168 69 HOH HOH . 
O 7 HOH B 69 2169 226 HOH HOH . 
O 7 HOH B 70 2170 216 HOH HOH . 
O 7 HOH B 71 2171 208 HOH HOH . 
O 7 HOH B 72 2172 215 HOH HOH . 
O 7 HOH B 73 2173 77 HOH HOH . 
O 7 HOH B 74 2174 212 HOH HOH . 
O 7 HOH B 75 2175 203 HOH HOH . 
O 7 HOH B 76 2176 230 HOH HOH . 
O 7 HOH B 77 2177 223 HOH HOH . 
O 7 HOH B 78 2178 232 HOH HOH . 
O 7 HOH B 79 2179 202 HOH HOH . 
O 7 HOH B 80 2180 172 HOH HOH . 
O 7 HOH B 81 2181 221 HOH HOH . 
O 7 HOH B 82 2182 192 HOH HOH . 
O 7 HOH B 83 2183 111 HOH HOH . 
O 7 HOH B 84 2184 170 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . M 6 6.487 -17.019 -23.349 0.8 37.4 ? C1 EDO 2005 B 1 
HETATM 2 O O1 EDO . . . M 6 7.66 -17.73 -22.993 0.8 36.79 ? O1 EDO 2005 B 1 
HETATM 3 C C2 EDO . . . M 6 5.338 -17.914 -22.874 0.8 38.13 ? C2 EDO 2005 B 1 
HETATM 4 O O2 EDO . . . M 6 4.047 -17.305 -22.758 0.8 38.81 ? O2 EDO 2005 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#