data_5EEL # _model_server_result.job_id ZrtScUPb5rY67Zim_MWWkQ _model_server_result.datetime_utc '2024-11-14 03:51:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eel # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":602}' # _entry.id 5EEL # _exptl.entry_id 5EEL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EEL _cell.length_a 95.228 _cell.length_b 95.228 _cell.length_c 241.566 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EEL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 PISA dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,H,M,N,O,DA 1 1 B,I,P,Q,EA,KA 2 1 C,J,R,S,T,FA 3 1 D,K,U,V,W,GA 4 1 E,L,X,Y,Z,HA,LA 5 1 F,G,AA,BA,CA,IA,JA 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 P N N ? 4 S N N ? 4 V N N ? 4 Y N N ? 4 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G N SER 1 L SER 1 1_555 G C5 AEA 9 L AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale2 G OG SER 1 L SER 1 1_555 G C4 73C 8 L 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? covale ? covale3 G C ASN 7 L ASN 7 1_555 G N 73C 8 L 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale4 G C 73C 8 L 73C 8 1_555 G N1 AEA 9 L AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale5 H N SER 1 M SER 1 1_555 H C5 AEA 9 M AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 ? covale ? covale6 H OG SER 1 M SER 1 1_555 H C4 73C 8 M 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? covale ? covale7 H C ASN 7 M ASN 7 1_555 H N 73C 8 M 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 H C 73C 8 M 73C 8 1_555 H N1 AEA 9 M AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? covale ? covale9 I N SER 1 N SER 1 1_555 I C5 AEA 9 N AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale10 I OG SER 1 N SER 1 1_555 I C4 73C 8 N 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale11 I C ASN 7 N ASN 7 1_555 I N 73C 8 N 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 I C 73C 8 N 73C 8 1_555 I N1 AEA 9 N AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale13 J OG SER 1 P SER 1 1_555 J C4 73C 8 P 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale14 J C ASN 7 P ASN 7 1_555 J N 73C 8 P 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 K N SER 1 Q SER 1 1_555 K C5 AEA 9 Q AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale16 K OG SER 1 Q SER 1 1_555 K C4 73C 8 Q 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale17 K C ASN 7 Q ASN 7 1_555 K N 73C 8 Q 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale18 K C 73C 8 Q 73C 8 1_555 K N1 AEA 9 Q AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? covale ? covale19 L N SER 1 R SER 1 1_555 L C5 AEA 9 R AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? covale ? covale20 L OG SER 1 R SER 1 1_555 L C4 73C 8 R 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale21 L C ASN 7 R ASN 7 1_555 L N 73C 8 R 73C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 L C 73C 8 R 73C 8 1_555 L N1 AEA 9 R AEA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.408 ? metalc ? metalc1 N O2 FMT . A FMT 602 1_555 O NA NA . A NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc2 P O2 FMT . B FMT 601 1_555 Q NA NA . B NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc3 S O2 FMT . C FMT 602 1_555 T NA NA . C NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc4 V O2 FMT . D FMT 602 1_555 W NA NA . D NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc5 Y O2 FMT . E FMT 602 1_555 Z NA NA . E NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? metalc ? metalc6 BA O2 FMT . F FMT 602 1_555 CA NA NA . F NA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EEL _atom_sites.fract_transf_matrix[1][1] 0.010501 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 MLA A 1 601 3 MLA MLA . N 4 FMT A 1 602 2 FMT FMT . O 5 NA A 1 603 8 NA NA . P 4 FMT B 1 601 3 FMT FMT . Q 5 NA B 1 602 9 NA NA . R 3 MLA C 1 601 4 MLA MLA . S 4 FMT C 1 602 4 FMT FMT . T 5 NA C 1 603 10 NA NA . U 3 MLA D 1 601 6 MLA MLA . V 4 FMT D 1 602 5 FMT FMT . W 5 NA D 1 603 11 NA NA . X 3 MLA E 1 601 2 MLA MLA . Y 4 FMT E 1 602 1 FMT FMT . Z 5 NA E 1 603 7 NA NA . AA 3 MLA F 1 601 5 MLA MLA . BA 4 FMT F 1 602 6 FMT FMT . CA 5 NA F 1 603 12 NA NA . DA 6 HOH A 1 701 16 HOH HOH . DA 6 HOH A 2 702 44 HOH HOH . DA 6 HOH A 3 703 29 HOH HOH . DA 6 HOH A 4 704 30 HOH HOH . DA 6 HOH A 5 705 48 HOH HOH . DA 6 HOH A 6 706 20 HOH HOH . EA 6 HOH B 1 701 4 HOH HOH . EA 6 HOH B 2 702 21 HOH HOH . EA 6 HOH B 3 703 25 HOH HOH . EA 6 HOH B 4 704 60 HOH HOH . EA 6 HOH B 5 705 1 HOH HOH . EA 6 HOH B 6 706 74 HOH HOH . EA 6 HOH B 7 707 7 HOH HOH . EA 6 HOH B 8 708 55 HOH HOH . EA 6 HOH B 9 709 64 HOH HOH . EA 6 HOH B 10 710 36 HOH HOH . EA 6 HOH B 11 711 12 HOH HOH . EA 6 HOH B 12 712 34 HOH HOH . EA 6 HOH B 13 713 27 HOH HOH . EA 6 HOH B 14 714 22 HOH HOH . EA 6 HOH B 15 715 69 HOH HOH . EA 6 HOH B 16 716 42 HOH HOH . EA 6 HOH B 17 717 28 HOH HOH . EA 6 HOH B 18 718 61 HOH HOH . EA 6 HOH B 19 719 66 HOH HOH . EA 6 HOH B 20 720 24 HOH HOH . EA 6 HOH B 21 721 47 HOH HOH . EA 6 HOH B 22 722 35 HOH HOH . FA 6 HOH C 1 701 56 HOH HOH . GA 6 HOH D 1 701 11 HOH HOH . GA 6 HOH D 2 702 5 HOH HOH . GA 6 HOH D 3 703 15 HOH HOH . GA 6 HOH D 4 704 31 HOH HOH . GA 6 HOH D 5 705 51 HOH HOH . GA 6 HOH D 6 706 67 HOH HOH . HA 6 HOH E 1 701 63 HOH HOH . HA 6 HOH E 2 702 14 HOH HOH . HA 6 HOH E 3 703 71 HOH HOH . HA 6 HOH E 4 704 3 HOH HOH . HA 6 HOH E 5 705 26 HOH HOH . HA 6 HOH E 6 706 10 HOH HOH . HA 6 HOH E 7 707 8 HOH HOH . HA 6 HOH E 8 708 46 HOH HOH . HA 6 HOH E 9 709 32 HOH HOH . HA 6 HOH E 10 710 6 HOH HOH . IA 6 HOH F 1 701 19 HOH HOH . IA 6 HOH F 2 702 17 HOH HOH . IA 6 HOH F 3 703 2 HOH HOH . IA 6 HOH F 4 704 58 HOH HOH . IA 6 HOH F 5 705 54 HOH HOH . IA 6 HOH F 6 706 50 HOH HOH . IA 6 HOH F 7 707 53 HOH HOH . IA 6 HOH F 8 708 72 HOH HOH . IA 6 HOH F 9 709 18 HOH HOH . IA 6 HOH F 10 710 57 HOH HOH . IA 6 HOH F 11 711 23 HOH HOH . IA 6 HOH F 12 712 43 HOH HOH . IA 6 HOH F 13 713 75 HOH HOH . IA 6 HOH F 14 714 13 HOH HOH . IA 6 HOH F 15 715 73 HOH HOH . IA 6 HOH F 16 716 38 HOH HOH . IA 6 HOH F 17 717 33 HOH HOH . IA 6 HOH F 18 718 65 HOH HOH . IA 6 HOH F 19 719 41 HOH HOH . IA 6 HOH F 20 720 49 HOH HOH . IA 6 HOH F 21 721 37 HOH HOH . IA 6 HOH F 22 722 68 HOH HOH . JA 6 HOH L 1 101 45 HOH HOH . JA 6 HOH L 2 102 40 HOH HOH . JA 6 HOH L 3 103 9 HOH HOH . JA 6 HOH L 4 104 59 HOH HOH . KA 6 HOH N 1 101 39 HOH HOH . KA 6 HOH N 2 102 62 HOH HOH . KA 6 HOH N 3 103 70 HOH HOH . LA 6 HOH R 1 101 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . Y 4 26.661 68.64 66.639 1 49.03 ? C FMT 602 E 1 HETATM 2 O O1 FMT . . . Y 4 26.714 69.688 67.281 1 46.83 ? O1 FMT 602 E 1 HETATM 3 O O2 FMT . . . Y 4 26.184 67.558 67.151 1 53.09 ? O2 FMT 602 E 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #