data_5EES # _model_server_result.job_id 71wOyvM8h3CSGDeVCOJl4w _model_server_result.datetime_utc '2024-12-21 14:46:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ees # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5EES # _exptl.entry_id 5EES _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EES _cell.length_a 107.969 _cell.length_b 107.969 _cell.length_c 172.049 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EES _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 107.969 107.969 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 107.969 107.969 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 250 n n PA O2A NAP sing 251 n n PA O5B NAP sing 252 n n PA O3 NAP sing 253 n n O2A HOA2 NAP sing 254 n n O5B C5B NAP sing 255 n n C5B C4B NAP sing 256 n n C5B H51A NAP sing 257 n n C5B H52A NAP sing 258 n n C4B O4B NAP sing 259 n n C4B C3B NAP sing 260 n n C4B H4B NAP sing 261 n n O4B C1B NAP sing 262 n n C3B O3B NAP sing 263 n n C3B C2B NAP sing 264 n n C3B H3B NAP sing 265 n n O3B HO3A NAP sing 266 n n C2B O2B NAP sing 267 n n C2B C1B NAP sing 268 n n C2B H2B NAP sing 269 n n O2B P2B NAP sing 270 n n C1B N9A NAP sing 271 n n C1B H1B NAP sing 272 n n N9A C8A NAP sing 273 n y N9A C4A NAP sing 274 n y C8A N7A NAP doub 275 n y C8A H8A NAP sing 276 n n N7A C5A NAP sing 277 n y C5A C6A NAP sing 278 n y C5A C4A NAP doub 279 n y C6A N6A NAP sing 280 n n C6A N1A NAP doub 281 n y N6A H61A NAP sing 282 n n N6A H62A NAP sing 283 n n N1A C2A NAP sing 284 n y C2A N3A NAP doub 285 n y C2A H2A NAP sing 286 n n N3A C4A NAP sing 287 n y O3 PN NAP sing 288 n n PN O1N NAP doub 289 n n PN O2N NAP sing 290 n n PN O5D NAP sing 291 n n O5D C5D NAP sing 292 n n C5D C4D NAP sing 293 n n C5D H51N NAP sing 294 n n C5D H52N NAP sing 295 n n C4D O4D NAP sing 296 n n C4D C3D NAP sing 297 n n C4D H4D NAP sing 298 n n O4D C1D NAP sing 299 n n C3D O3D NAP sing 300 n n C3D C2D NAP sing 301 n n C3D H3D NAP sing 302 n n O3D HO3N NAP sing 303 n n C2D O2D NAP sing 304 n n C2D C1D NAP sing 305 n n C2D H2D NAP sing 306 n n O2D HO2N NAP sing 307 n n C1D N1N NAP sing 308 n n C1D H1D NAP sing 309 n n N1N C2N NAP sing 310 n y N1N C6N NAP doub 311 n y C2N C3N NAP doub 312 n y C2N H2N NAP sing 313 n n C3N C7N NAP sing 314 n n C3N C4N NAP sing 315 n y C7N O7N NAP doub 316 n n C7N N7N NAP sing 317 n n N7N H71N NAP sing 318 n n N7N H72N NAP sing 319 n n C4N C5N NAP doub 320 n y C4N H4N NAP sing 321 n n C5N C6N NAP sing 322 n y C5N H5N NAP sing 323 n n C6N H6N NAP sing 324 n n P2B O1X NAP doub 325 n n P2B O2X NAP sing 326 n n P2B O3X NAP sing 327 n n O2X HOP2 NAP sing 328 n n O3X HOP3 NAP sing 329 n n # _atom_sites.entry_id 5EES _atom_sites.fract_transf_matrix[1][1] 0.009262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009262 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 NAP A 1 302 1 NAP NAP . D 4 SO4 A 1 303 1 SO4 SO4 . E 4 SO4 A 1 304 2 SO4 SO4 . F 5 HOH A 1 401 110 HOH HOH . F 5 HOH A 2 402 90 HOH HOH . F 5 HOH A 3 403 1 HOH HOH . F 5 HOH A 4 404 91 HOH HOH . F 5 HOH A 5 405 67 HOH HOH . F 5 HOH A 6 406 39 HOH HOH . F 5 HOH A 7 407 5 HOH HOH . F 5 HOH A 8 408 83 HOH HOH . F 5 HOH A 9 409 56 HOH HOH . F 5 HOH A 10 410 94 HOH HOH . F 5 HOH A 11 411 11 HOH HOH . F 5 HOH A 12 412 72 HOH HOH . F 5 HOH A 13 413 30 HOH HOH . F 5 HOH A 14 414 7 HOH HOH . F 5 HOH A 15 415 42 HOH HOH . F 5 HOH A 16 416 60 HOH HOH . F 5 HOH A 17 417 22 HOH HOH . F 5 HOH A 18 418 14 HOH HOH . F 5 HOH A 19 419 12 HOH HOH . F 5 HOH A 20 420 13 HOH HOH . F 5 HOH A 21 421 101 HOH HOH . F 5 HOH A 22 422 93 HOH HOH . F 5 HOH A 23 423 78 HOH HOH . F 5 HOH A 24 424 8 HOH HOH . F 5 HOH A 25 425 17 HOH HOH . F 5 HOH A 26 426 53 HOH HOH . F 5 HOH A 27 427 29 HOH HOH . F 5 HOH A 28 428 31 HOH HOH . F 5 HOH A 29 429 26 HOH HOH . F 5 HOH A 30 430 116 HOH HOH . F 5 HOH A 31 431 44 HOH HOH . F 5 HOH A 32 432 55 HOH HOH . F 5 HOH A 33 433 81 HOH HOH . F 5 HOH A 34 434 2 HOH HOH . F 5 HOH A 35 435 121 HOH HOH . F 5 HOH A 36 436 77 HOH HOH . F 5 HOH A 37 437 63 HOH HOH . F 5 HOH A 38 438 24 HOH HOH . F 5 HOH A 39 439 19 HOH HOH . F 5 HOH A 40 440 9 HOH HOH . F 5 HOH A 41 441 111 HOH HOH . F 5 HOH A 42 442 28 HOH HOH . F 5 HOH A 43 443 120 HOH HOH . F 5 HOH A 44 444 92 HOH HOH . F 5 HOH A 45 445 61 HOH HOH . F 5 HOH A 46 446 68 HOH HOH . F 5 HOH A 47 447 23 HOH HOH . F 5 HOH A 48 448 10 HOH HOH . F 5 HOH A 49 449 88 HOH HOH . F 5 HOH A 50 450 109 HOH HOH . F 5 HOH A 51 451 6 HOH HOH . F 5 HOH A 52 452 43 HOH HOH . F 5 HOH A 53 453 79 HOH HOH . F 5 HOH A 54 454 16 HOH HOH . F 5 HOH A 55 455 25 HOH HOH . F 5 HOH A 56 456 85 HOH HOH . F 5 HOH A 57 457 48 HOH HOH . F 5 HOH A 58 458 82 HOH HOH . F 5 HOH A 59 459 18 HOH HOH . F 5 HOH A 60 460 80 HOH HOH . F 5 HOH A 61 461 66 HOH HOH . F 5 HOH A 62 462 57 HOH HOH . F 5 HOH A 63 463 47 HOH HOH . F 5 HOH A 64 464 112 HOH HOH . F 5 HOH A 65 465 33 HOH HOH . F 5 HOH A 66 466 21 HOH HOH . F 5 HOH A 67 467 32 HOH HOH . F 5 HOH A 68 468 114 HOH HOH . F 5 HOH A 69 469 71 HOH HOH . F 5 HOH A 70 470 54 HOH HOH . F 5 HOH A 71 471 41 HOH HOH . F 5 HOH A 72 472 52 HOH HOH . F 5 HOH A 73 473 27 HOH HOH . F 5 HOH A 74 474 69 HOH HOH . F 5 HOH A 75 475 50 HOH HOH . F 5 HOH A 76 476 64 HOH HOH . F 5 HOH A 77 477 49 HOH HOH . F 5 HOH A 78 478 96 HOH HOH . F 5 HOH A 79 479 98 HOH HOH . F 5 HOH A 80 480 59 HOH HOH . F 5 HOH A 81 481 74 HOH HOH . F 5 HOH A 82 482 15 HOH HOH . F 5 HOH A 83 483 84 HOH HOH . F 5 HOH A 84 484 70 HOH HOH . F 5 HOH A 85 485 58 HOH HOH . F 5 HOH A 86 486 65 HOH HOH . F 5 HOH A 87 487 3 HOH HOH . F 5 HOH A 88 488 4 HOH HOH . F 5 HOH A 89 489 87 HOH HOH . F 5 HOH A 90 490 62 HOH HOH . F 5 HOH A 91 491 20 HOH HOH . F 5 HOH A 92 492 40 HOH HOH . F 5 HOH A 93 493 102 HOH HOH . F 5 HOH A 94 494 106 HOH HOH . F 5 HOH A 95 495 103 HOH HOH . F 5 HOH A 96 496 46 HOH HOH . F 5 HOH A 97 497 86 HOH HOH . F 5 HOH A 98 498 75 HOH HOH . F 5 HOH A 99 499 100 HOH HOH . F 5 HOH A 100 500 105 HOH HOH . F 5 HOH A 101 501 51 HOH HOH . F 5 HOH A 102 502 34 HOH HOH . F 5 HOH A 103 503 45 HOH HOH . F 5 HOH A 104 504 35 HOH HOH . F 5 HOH A 105 505 115 HOH HOH . F 5 HOH A 106 506 37 HOH HOH . F 5 HOH A 107 507 76 HOH HOH . F 5 HOH A 108 508 108 HOH HOH . F 5 HOH A 109 509 89 HOH HOH . F 5 HOH A 110 510 104 HOH HOH . F 5 HOH A 111 511 95 HOH HOH . F 5 HOH A 112 512 99 HOH HOH . F 5 HOH A 113 513 122 HOH HOH . F 5 HOH A 114 514 36 HOH HOH . F 5 HOH A 115 515 38 HOH HOH . F 5 HOH A 116 516 73 HOH HOH . F 5 HOH A 117 517 117 HOH HOH . F 5 HOH A 118 518 107 HOH HOH . F 5 HOH A 119 519 97 HOH HOH . F 5 HOH A 120 520 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 41.243 24.297 9.896 1 45.88 ? PA NAP 302 A 1 HETATM 2 O O1A NAP . . . C 3 40.49 25.042 8.822 1 46.39 ? O1A NAP 302 A 1 HETATM 3 O O2A NAP . . . C 3 40.692 23.962 11.23 1 47.32 ? O2A NAP 302 A 1 HETATM 4 O O5B NAP . . . C 3 41.714 22.939 9.199 1 46.2 ? O5B NAP 302 A 1 HETATM 5 C C5B NAP . . . C 3 42.221 21.837 9.935 1 47.33 ? C5B NAP 302 A 1 HETATM 6 C C4B NAP . . . C 3 41.785 20.653 9.118 1 55.05 ? C4B NAP 302 A 1 HETATM 7 O O4B NAP . . . C 3 42.471 19.445 9.491 1 52.42 ? O4B NAP 302 A 1 HETATM 8 C C3B NAP . . . C 3 40.268 20.41 9.247 1 55.98 ? C3B NAP 302 A 1 HETATM 9 O O3B NAP . . . C 3 39.747 20.189 7.939 1 49.26 ? O3B NAP 302 A 1 HETATM 10 C C2B NAP . . . C 3 40.287 19.195 10.15 1 61.4 ? C2B NAP 302 A 1 HETATM 11 O O2B NAP . . . C 3 39.117 18.395 10.2 1 89.59 ? O2B NAP 302 A 1 HETATM 12 C C1B NAP . . . C 3 41.474 18.417 9.638 1 56.26 ? C1B NAP 302 A 1 HETATM 13 N N9A NAP . . . C 3 41.981 17.394 10.577 1 47.81 ? N9A NAP 302 A 1 HETATM 14 C C8A NAP . . . C 3 41.981 17.315 11.962 1 44.83 ? C8A NAP 302 A 1 HETATM 15 N N7A NAP . . . C 3 42.629 16.136 12.337 1 49.33 ? N7A NAP 302 A 1 HETATM 16 C C5A NAP . . . C 3 43.041 15.484 11.199 1 44.29 ? C5A NAP 302 A 1 HETATM 17 C C6A NAP . . . C 3 43.747 14.251 10.8 1 53.37 ? C6A NAP 302 A 1 HETATM 18 N N6A NAP . . . C 3 44.189 13.426 11.745 1 62.58 ? N6A NAP 302 A 1 HETATM 19 N N1A NAP . . . C 3 44.03 13.955 9.512 1 51.15 ? N1A NAP 302 A 1 HETATM 20 C C2A NAP . . . C 3 43.569 14.789 8.57 1 52.11 ? C2A NAP 302 A 1 HETATM 21 N N3A NAP . . . C 3 42.872 15.911 8.838 1 40.77 ? N3A NAP 302 A 1 HETATM 22 C C4A NAP . . . C 3 42.607 16.313 10.072 1 42.76 ? C4A NAP 302 A 1 HETATM 23 O O3 NAP . . . C 3 42.565 25.17 10.249 1 46.52 ? O3 NAP 302 A 1 HETATM 24 P PN NAP . . . C 3 43.502 25.982 9.226 1 43.51 ? PN NAP 302 A 1 HETATM 25 O O1N NAP . . . C 3 43.508 25.293 7.903 1 41.94 ? O1N NAP 302 A 1 HETATM 26 O O2N NAP . . . C 3 43.229 27.445 9.328 1 44.89 ? O2N NAP 302 A 1 HETATM 27 O O5D NAP . . . C 3 44.9 25.776 10.019 1 45.59 ? O5D NAP 302 A 1 HETATM 28 C C5D NAP . . . C 3 45.489 24.493 10.086 1 41.2 ? C5D NAP 302 A 1 HETATM 29 C C4D NAP . . . C 3 46.813 24.579 10.784 1 40.6 ? C4D NAP 302 A 1 HETATM 30 O O4D NAP . . . C 3 47.783 25.335 10.021 1 41.14 ? O4D NAP 302 A 1 HETATM 31 C C3D NAP . . . C 3 46.664 25.268 12.103 1 39.6 ? C3D NAP 302 A 1 HETATM 32 O O3D NAP . . . C 3 47.565 24.693 13.049 1 38.73 ? O3D NAP 302 A 1 HETATM 33 C C2D NAP . . . C 3 47.144 26.658 11.856 1 40.98 ? C2D NAP 302 A 1 HETATM 34 O O2D NAP . . . C 3 47.685 27.127 13.055 1 41.13 ? O2D NAP 302 A 1 HETATM 35 C C1D NAP . . . C 3 48.244 26.415 10.853 1 40.45 ? C1D NAP 302 A 1 HETATM 36 N N1N NAP . . . C 3 48.555 27.49 9.935 1 42.46 ? N1N NAP 302 A 1 HETATM 37 C C2N NAP . . . C 3 49.867 27.677 9.661 1 39.44 ? C2N NAP 302 A 1 HETATM 38 C C3N NAP . . . C 3 50.299 28.658 8.761 1 43.6 ? C3N NAP 302 A 1 HETATM 39 C C7N NAP . . . C 3 51.752 28.757 8.466 1 41.53 ? C7N NAP 302 A 1 HETATM 40 O O7N NAP . . . C 3 52.609 27.867 8.756 1 45.85 ? O7N NAP 302 A 1 HETATM 41 N N7N NAP . . . C 3 52.171 29.75 7.766 1 40.63 ? N7N NAP 302 A 1 HETATM 42 C C4N NAP . . . C 3 49.313 29.444 8.096 1 48.43 ? C4N NAP 302 A 1 HETATM 43 C C5N NAP . . . C 3 47.958 29.223 8.4 1 44.94 ? C5N NAP 302 A 1 HETATM 44 C C6N NAP . . . C 3 47.589 28.215 9.296 1 43.93 ? C6N NAP 302 A 1 HETATM 45 P P2B NAP . . . C 3 38.301 18.369 11.651 1 174.89 ? P2B NAP 302 A 1 HETATM 46 O O1X NAP . . . C 3 37.391 19.584 11.614 1 160.99 ? O1X NAP 302 A 1 HETATM 47 O O2X NAP . . . C 3 39.296 18.399 12.808 1 162.18 ? O2X NAP 302 A 1 HETATM 48 O O3X NAP . . . C 3 37.488 17.096 11.709 1 182.09 ? O3X NAP 302 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #