data_5EFA # _model_server_result.job_id 0KxjXai_NZIOMiTEmlA5XQ _model_server_result.datetime_utc '2024-11-13 18:09:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5efa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5EFA # _exptl.entry_id 5EFA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EFA _cell.length_a 40.343 _cell.length_b 46.709 _cell.length_c 87.794 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EFA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 237 n n PG O2G MGT sing 238 n n PG O3G MGT sing 239 n n PG O3B MGT sing 240 n n O2G HOG2 MGT sing 241 n n O3G HOG3 MGT sing 242 n n O3B PB MGT sing 243 n n PB O1B MGT doub 244 n n PB O2B MGT sing 245 n n PB O3A MGT sing 246 n n O2B HOB2 MGT sing 247 n n O3A PA MGT sing 248 n n PA O1A MGT doub 249 n n PA O2A MGT sing 250 n n PA O5' MGT sing 251 n n O2A HOA2 MGT sing 252 n n O5' C5' MGT sing 253 n n C5' C4' MGT sing 254 n n C5' "H5'1" MGT sing 255 n n C5' "H5'2" MGT sing 256 n n C4' O4' MGT sing 257 n n C4' C3' MGT sing 258 n n C4' H4' MGT sing 259 n n O4' C1' MGT sing 260 n n C3' O3' MGT sing 261 n n C3' C2' MGT sing 262 n n C3' H3' MGT sing 263 n n O3' HO3' MGT sing 264 n n C2' O2' MGT sing 265 n n C2' C1' MGT sing 266 n n C2' H2' MGT sing 267 n n O2' HO2' MGT sing 268 n n C1' N9 MGT sing 269 n n C1' H1' MGT sing 270 n n N9 C8 MGT sing 271 n n N9 C4 MGT sing 272 n n C8 N7 MGT sing 273 n n C8 H81 MGT sing 274 n n C8 H82 MGT sing 275 n n N7 CM7 MGT sing 276 n n N7 C5 MGT sing 277 n n CM7 HM71 MGT sing 278 n n CM7 HM72 MGT sing 279 n n CM7 HM73 MGT sing 280 n n C5 C6 MGT sing 281 n n C5 C4 MGT doub 282 n n C6 O6 MGT doub 283 n n C6 N1 MGT sing 284 n n N1 C2 MGT sing 285 n n N1 HN1 MGT sing 286 n n C2 N2 MGT sing 287 n n C2 N3 MGT doub 288 n n N2 HN21 MGT sing 289 n n N2 HN22 MGT sing 290 n n N3 C4 MGT sing 291 n n # _atom_sites.entry_id 5EFA _atom_sites.fract_transf_matrix[1][1] 0.024787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01139 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGT A 1 501 1 MGT MGT . C 3 HOH A 1 601 110 HOH HOH . C 3 HOH A 2 602 108 HOH HOH . C 3 HOH A 3 603 106 HOH HOH . C 3 HOH A 4 604 103 HOH HOH . C 3 HOH A 5 605 91 HOH HOH . C 3 HOH A 6 606 32 HOH HOH . C 3 HOH A 7 607 95 HOH HOH . C 3 HOH A 8 608 96 HOH HOH . C 3 HOH A 9 609 89 HOH HOH . C 3 HOH A 10 610 92 HOH HOH . C 3 HOH A 11 611 77 HOH HOH . C 3 HOH A 12 612 65 HOH HOH . C 3 HOH A 13 613 18 HOH HOH . C 3 HOH A 14 614 83 HOH HOH . C 3 HOH A 15 615 16 HOH HOH . C 3 HOH A 16 616 34 HOH HOH . C 3 HOH A 17 617 38 HOH HOH . C 3 HOH A 18 618 114 HOH HOH . C 3 HOH A 19 619 56 HOH HOH . C 3 HOH A 20 620 5 HOH HOH . C 3 HOH A 21 621 67 HOH HOH . C 3 HOH A 22 622 14 HOH HOH . C 3 HOH A 23 623 97 HOH HOH . C 3 HOH A 24 624 58 HOH HOH . C 3 HOH A 25 625 102 HOH HOH . C 3 HOH A 26 626 36 HOH HOH . C 3 HOH A 27 627 40 HOH HOH . C 3 HOH A 28 628 73 HOH HOH . C 3 HOH A 29 629 15 HOH HOH . C 3 HOH A 30 630 52 HOH HOH . C 3 HOH A 31 631 117 HOH HOH . C 3 HOH A 32 632 26 HOH HOH . C 3 HOH A 33 633 10 HOH HOH . C 3 HOH A 34 634 46 HOH HOH . C 3 HOH A 35 635 75 HOH HOH . C 3 HOH A 36 636 1 HOH HOH . C 3 HOH A 37 637 54 HOH HOH . C 3 HOH A 38 638 112 HOH HOH . C 3 HOH A 39 639 35 HOH HOH . C 3 HOH A 40 640 11 HOH HOH . C 3 HOH A 41 641 3 HOH HOH . C 3 HOH A 42 642 50 HOH HOH . C 3 HOH A 43 643 84 HOH HOH . C 3 HOH A 44 644 72 HOH HOH . C 3 HOH A 45 645 19 HOH HOH . C 3 HOH A 46 646 61 HOH HOH . C 3 HOH A 47 647 74 HOH HOH . C 3 HOH A 48 648 33 HOH HOH . C 3 HOH A 49 649 86 HOH HOH . C 3 HOH A 50 650 78 HOH HOH . C 3 HOH A 51 651 31 HOH HOH . C 3 HOH A 52 652 94 HOH HOH . C 3 HOH A 53 653 23 HOH HOH . C 3 HOH A 54 654 53 HOH HOH . C 3 HOH A 55 655 21 HOH HOH . C 3 HOH A 56 656 45 HOH HOH . C 3 HOH A 57 657 25 HOH HOH . C 3 HOH A 58 658 51 HOH HOH . C 3 HOH A 59 659 39 HOH HOH . C 3 HOH A 60 660 7 HOH HOH . C 3 HOH A 61 661 12 HOH HOH . C 3 HOH A 62 662 68 HOH HOH . C 3 HOH A 63 663 24 HOH HOH . C 3 HOH A 64 664 27 HOH HOH . C 3 HOH A 65 665 105 HOH HOH . C 3 HOH A 66 666 76 HOH HOH . C 3 HOH A 67 667 111 HOH HOH . C 3 HOH A 68 668 2 HOH HOH . C 3 HOH A 69 669 42 HOH HOH . C 3 HOH A 70 670 48 HOH HOH . C 3 HOH A 71 671 30 HOH HOH . C 3 HOH A 72 672 37 HOH HOH . C 3 HOH A 73 673 66 HOH HOH . C 3 HOH A 74 674 22 HOH HOH . C 3 HOH A 75 675 13 HOH HOH . C 3 HOH A 76 676 8 HOH HOH . C 3 HOH A 77 677 55 HOH HOH . C 3 HOH A 78 678 81 HOH HOH . C 3 HOH A 79 679 44 HOH HOH . C 3 HOH A 80 680 41 HOH HOH . C 3 HOH A 81 681 90 HOH HOH . C 3 HOH A 82 682 43 HOH HOH . C 3 HOH A 83 683 17 HOH HOH . C 3 HOH A 84 684 20 HOH HOH . C 3 HOH A 85 685 82 HOH HOH . C 3 HOH A 86 686 80 HOH HOH . C 3 HOH A 87 687 49 HOH HOH . C 3 HOH A 88 688 29 HOH HOH . C 3 HOH A 89 689 64 HOH HOH . C 3 HOH A 90 690 4 HOH HOH . C 3 HOH A 91 691 60 HOH HOH . C 3 HOH A 92 692 79 HOH HOH . C 3 HOH A 93 693 119 HOH HOH . C 3 HOH A 94 694 101 HOH HOH . C 3 HOH A 95 695 70 HOH HOH . C 3 HOH A 96 696 6 HOH HOH . C 3 HOH A 97 697 57 HOH HOH . C 3 HOH A 98 698 121 HOH HOH . C 3 HOH A 99 699 59 HOH HOH . C 3 HOH A 100 700 71 HOH HOH . C 3 HOH A 101 701 85 HOH HOH . C 3 HOH A 102 702 113 HOH HOH . C 3 HOH A 103 703 62 HOH HOH . C 3 HOH A 104 704 28 HOH HOH . C 3 HOH A 105 705 116 HOH HOH . C 3 HOH A 106 706 99 HOH HOH . C 3 HOH A 107 707 93 HOH HOH . C 3 HOH A 108 708 122 HOH HOH . C 3 HOH A 109 709 100 HOH HOH . C 3 HOH A 110 710 109 HOH HOH . C 3 HOH A 111 711 87 HOH HOH . C 3 HOH A 112 712 47 HOH HOH . C 3 HOH A 113 713 98 HOH HOH . C 3 HOH A 114 714 88 HOH HOH . C 3 HOH A 115 715 120 HOH HOH . C 3 HOH A 116 716 118 HOH HOH . C 3 HOH A 117 717 9 HOH HOH . C 3 HOH A 118 718 104 HOH HOH . C 3 HOH A 119 719 63 HOH HOH . C 3 HOH A 120 720 69 HOH HOH . C 3 HOH A 121 721 107 HOH HOH . C 3 HOH A 122 722 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . B 2 32.785 28.311 22.144 1 58.93 ? PG MGT 501 A 1 HETATM 2 O O1G MGT . . . B 2 32.346 29.303 21.091 1 65.07 ? O1G MGT 501 A 1 HETATM 3 O O2G MGT . . . B 2 33.676 28.915 23.203 1 55.56 ? O2G MGT 501 A 1 HETATM 4 O O3G MGT . . . B 2 33.267 26.986 21.599 1 66.55 ? O3G MGT 501 A 1 HETATM 5 O O3B MGT . . . B 2 31.401 27.92 22.88 1 56.12 ? O3B MGT 501 A 1 HETATM 6 P PB MGT . . . B 2 31.207 27.963 24.478 1 53.27 ? PB MGT 501 A 1 HETATM 7 O O1B MGT . . . B 2 32.5 27.657 25.212 1 48.01 ? O1B MGT 501 A 1 HETATM 8 O O2B MGT . . . B 2 29.936 27.216 24.793 1 45.32 ? O2B MGT 501 A 1 HETATM 9 O O3A MGT . . . B 2 30.941 29.533 24.638 1 52.39 ? O3A MGT 501 A 1 HETATM 10 P PA MGT . . . B 2 30.21 30.182 25.906 1 28.25 ? PA MGT 501 A 1 HETATM 11 O O1A MGT . . . B 2 30.83 29.666 27.183 1 30.72 ? O1A MGT 501 A 1 HETATM 12 O O2A MGT . . . B 2 28.723 30.094 25.636 1 32.71 ? O2A MGT 501 A 1 HETATM 13 O O5' MGT . . . B 2 30.67 31.708 25.717 1 21.46 ? O5' MGT 501 A 1 HETATM 14 C C5' MGT . . . B 2 29.787 32.627 25.08 1 21.72 ? C5' MGT 501 A 1 HETATM 15 C C4' MGT . . . B 2 30.459 33.25 23.857 1 25.67 ? C4' MGT 501 A 1 HETATM 16 O O4' MGT . . . B 2 31.564 34.07 24.249 1 23.42 ? O4' MGT 501 A 1 HETATM 17 C C3' MGT . . . B 2 31.056 32.197 22.944 1 25 ? C3' MGT 501 A 1 HETATM 18 O O3' MGT . . . B 2 31.012 32.792 21.646 1 28.34 ? O3' MGT 501 A 1 HETATM 19 C C2' MGT . . . B 2 32.505 32.064 23.369 1 23.83 ? C2' MGT 501 A 1 HETATM 20 O O2' MGT . . . B 2 33.33 31.745 22.25 1 25.25 ? O2' MGT 501 A 1 HETATM 21 C C1' MGT . . . B 2 32.787 33.493 23.777 1 22.23 ? C1' MGT 501 A 1 HETATM 22 N N9 MGT . . . B 2 33.797 33.788 24.814 1 22.56 ? N9 MGT 501 A 1 HETATM 23 C C8 MGT . . . B 2 33.509 33.333 26.188 1 22.69 ? C8 MGT 501 A 1 HETATM 24 N N7 MGT . . . B 2 34.715 33.925 26.772 1 24.01 ? N7 MGT 501 A 1 HETATM 25 C CM7 MGT . . . B 2 34.864 33.713 28.248 1 18.13 ? CM7 MGT 501 A 1 HETATM 26 C C5 MGT . . . B 2 35.506 34.586 25.918 1 21.17 ? C5 MGT 501 A 1 HETATM 27 C C6 MGT . . . B 2 36.773 35.312 26.054 1 16.23 ? C6 MGT 501 A 1 HETATM 28 O O6 MGT . . . B 2 37.367 35.437 27.14 1 15.32 ? O6 MGT 501 A 1 HETATM 29 N N1 MGT . . . B 2 37.255 35.851 24.929 1 20.47 ? N1 MGT 501 A 1 HETATM 30 C C2 MGT . . . B 2 36.65 35.753 23.728 1 20.78 ? C2 MGT 501 A 1 HETATM 31 N N2 MGT . . . B 2 37.244 36.337 22.655 1 17.11 ? N2 MGT 501 A 1 HETATM 32 N N3 MGT . . . B 2 35.485 35.092 23.542 1 16.04 ? N3 MGT 501 A 1 HETATM 33 C C4 MGT . . . B 2 34.886 34.507 24.594 1 18.46 ? C4 MGT 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #