data_5EFB
#
_model_server_result.job_id            pIzz37S1znDrDVazNmiqhw 
_model_server_result.datetime_utc      '2024-11-24 07:59:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5efb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2001}' 
#
_entry.id    5EFB 
#
_exptl.entry_id    5EFB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EFB 
_cell.length_a            83.447 
_cell.length_b            94.431 
_cell.length_c            51.611 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EFB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 176 D ASP 610 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? 
metalc ? metalc2 A OD1 ASP 176 D ASP 610 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? 
metalc ? metalc3 A OD2 ASP 178 D ASP 612 1_555 B ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc4 A O ASP 178 D ASP 612 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc5 A ND1 HIS 180 D HIS 614 1_555 B ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc6 A O HIS 180 D HIS 614 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? 
metalc ? metalc7 A O PHE 189 D PHE 623 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? 
metalc ? metalc8 A O ASP 192 D ASP 626 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? 
metalc ? metalc9 A O VAL 195 D VAL 629 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? 
metalc ? metalc10 A OG SER 199 D SER 633 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? 
metalc ? metalc11 A O LEU 200 D LEU 634 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? 
metalc ? metalc12 A O TYR 228 D TYR 662 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? 
metalc ? metalc13 A OD2 ASP 271 D ASP 705 1_555 B ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
metalc ? metalc14 B ZN ZN . D ZN 2001 1_555 E N12 5OK . D 5OK 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc15 B ZN ZN . D ZN 2001 1_555 E O13 5OK . D 5OK 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc16 B ZN ZN . D ZN 2001 1_555 E O14 5OK . D 5OK 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc17 D K K . D K 2003 1_555 F O HOH . D HOH 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? 
metalc ? metalc18 D K K . D K 2003 1_555 F O HOH . D HOH 2125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.215 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5EFB 
_atom_sites.fract_transf_matrix[1][1]    0.011984 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01059 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019376 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN D 1 2001 2001 ZN ZN . 
C 3 K D 1 2002 2002 K K . 
D 3 K D 1 2003 2003 K K . 
E 4 5OK D 1 2004 1 5OK OXM . 
F 5 HOH D 1 2101 14 HOH HOH . 
F 5 HOH D 2 2102 2 HOH HOH . 
F 5 HOH D 3 2103 7 HOH HOH . 
F 5 HOH D 4 2104 44 HOH HOH . 
F 5 HOH D 5 2105 79 HOH HOH . 
F 5 HOH D 6 2106 11 HOH HOH . 
F 5 HOH D 7 2107 41 HOH HOH . 
F 5 HOH D 8 2108 86 HOH HOH . 
F 5 HOH D 9 2109 4 HOH HOH . 
F 5 HOH D 10 2110 65 HOH HOH . 
F 5 HOH D 11 2111 148 HOH HOH . 
F 5 HOH D 12 2112 58 HOH HOH . 
F 5 HOH D 13 2113 49 HOH HOH . 
F 5 HOH D 14 2114 9 HOH HOH . 
F 5 HOH D 15 2115 39 HOH HOH . 
F 5 HOH D 16 2116 48 HOH HOH . 
F 5 HOH D 17 2117 157 HOH HOH . 
F 5 HOH D 18 2118 27 HOH HOH . 
F 5 HOH D 19 2119 13 HOH HOH . 
F 5 HOH D 20 2120 134 HOH HOH . 
F 5 HOH D 21 2121 76 HOH HOH . 
F 5 HOH D 22 2122 45 HOH HOH . 
F 5 HOH D 23 2123 110 HOH HOH . 
F 5 HOH D 24 2124 15 HOH HOH . 
F 5 HOH D 25 2125 3 HOH HOH . 
F 5 HOH D 26 2126 8 HOH HOH . 
F 5 HOH D 27 2127 18 HOH HOH . 
F 5 HOH D 28 2128 52 HOH HOH . 
F 5 HOH D 29 2129 23 HOH HOH . 
F 5 HOH D 30 2130 25 HOH HOH . 
F 5 HOH D 31 2131 33 HOH HOH . 
F 5 HOH D 32 2132 21 HOH HOH . 
F 5 HOH D 33 2133 153 HOH HOH . 
F 5 HOH D 34 2134 59 HOH HOH . 
F 5 HOH D 35 2135 24 HOH HOH . 
F 5 HOH D 36 2136 1 HOH HOH . 
F 5 HOH D 37 2137 151 HOH HOH . 
F 5 HOH D 38 2138 155 HOH HOH . 
F 5 HOH D 39 2139 35 HOH HOH . 
F 5 HOH D 40 2140 12 HOH HOH . 
F 5 HOH D 41 2141 20 HOH HOH . 
F 5 HOH D 42 2142 93 HOH HOH . 
F 5 HOH D 43 2143 32 HOH HOH . 
F 5 HOH D 44 2144 72 HOH HOH . 
F 5 HOH D 45 2145 42 HOH HOH . 
F 5 HOH D 46 2146 143 HOH HOH . 
F 5 HOH D 47 2147 37 HOH HOH . 
F 5 HOH D 48 2148 16 HOH HOH . 
F 5 HOH D 49 2149 82 HOH HOH . 
F 5 HOH D 50 2150 159 HOH HOH . 
F 5 HOH D 51 2151 161 HOH HOH . 
F 5 HOH D 52 2152 22 HOH HOH . 
F 5 HOH D 53 2153 98 HOH HOH . 
F 5 HOH D 54 2154 64 HOH HOH . 
F 5 HOH D 55 2155 31 HOH HOH . 
F 5 HOH D 56 2156 51 HOH HOH . 
F 5 HOH D 57 2157 67 HOH HOH . 
F 5 HOH D 58 2158 108 HOH HOH . 
F 5 HOH D 59 2159 54 HOH HOH . 
F 5 HOH D 60 2160 26 HOH HOH . 
F 5 HOH D 61 2161 166 HOH HOH . 
F 5 HOH D 62 2162 56 HOH HOH . 
F 5 HOH D 63 2163 46 HOH HOH . 
F 5 HOH D 64 2164 19 HOH HOH . 
F 5 HOH D 65 2165 66 HOH HOH . 
F 5 HOH D 66 2166 100 HOH HOH . 
F 5 HOH D 67 2167 92 HOH HOH . 
F 5 HOH D 68 2168 28 HOH HOH . 
F 5 HOH D 69 2169 84 HOH HOH . 
F 5 HOH D 70 2170 75 HOH HOH . 
F 5 HOH D 71 2171 96 HOH HOH . 
F 5 HOH D 72 2172 162 HOH HOH . 
F 5 HOH D 73 2173 57 HOH HOH . 
F 5 HOH D 74 2174 40 HOH HOH . 
F 5 HOH D 75 2175 85 HOH HOH . 
F 5 HOH D 76 2176 62 HOH HOH . 
F 5 HOH D 77 2177 87 HOH HOH . 
F 5 HOH D 78 2178 30 HOH HOH . 
F 5 HOH D 79 2179 74 HOH HOH . 
F 5 HOH D 80 2180 34 HOH HOH . 
F 5 HOH D 81 2181 36 HOH HOH . 
F 5 HOH D 82 2182 95 HOH HOH . 
F 5 HOH D 83 2183 43 HOH HOH . 
F 5 HOH D 84 2184 53 HOH HOH . 
F 5 HOH D 85 2185 68 HOH HOH . 
F 5 HOH D 86 2186 99 HOH HOH . 
F 5 HOH D 87 2187 111 HOH HOH . 
F 5 HOH D 88 2188 168 HOH HOH . 
F 5 HOH D 89 2189 91 HOH HOH . 
F 5 HOH D 90 2190 123 HOH HOH . 
F 5 HOH D 91 2191 50 HOH HOH . 
F 5 HOH D 92 2192 10 HOH HOH . 
F 5 HOH D 93 2193 137 HOH HOH . 
F 5 HOH D 94 2194 17 HOH HOH . 
F 5 HOH D 95 2195 116 HOH HOH . 
F 5 HOH D 96 2196 114 HOH HOH . 
F 5 HOH D 97 2197 120 HOH HOH . 
F 5 HOH D 98 2198 113 HOH HOH . 
F 5 HOH D 99 2199 83 HOH HOH . 
F 5 HOH D 100 2200 122 HOH HOH . 
F 5 HOH D 101 2201 70 HOH HOH . 
F 5 HOH D 102 2202 112 HOH HOH . 
F 5 HOH D 103 2203 90 HOH HOH . 
F 5 HOH D 104 2204 61 HOH HOH . 
F 5 HOH D 105 2205 102 HOH HOH . 
F 5 HOH D 106 2206 121 HOH HOH . 
F 5 HOH D 107 2207 38 HOH HOH . 
F 5 HOH D 108 2208 150 HOH HOH . 
F 5 HOH D 109 2209 81 HOH HOH . 
F 5 HOH D 110 2210 124 HOH HOH . 
F 5 HOH D 111 2211 109 HOH HOH . 
F 5 HOH D 112 2212 101 HOH HOH . 
F 5 HOH D 113 2213 142 HOH HOH . 
F 5 HOH D 114 2214 167 HOH HOH . 
F 5 HOH D 115 2215 115 HOH HOH . 
F 5 HOH D 116 2216 133 HOH HOH . 
F 5 HOH D 117 2217 163 HOH HOH . 
F 5 HOH D 118 2218 169 HOH HOH . 
F 5 HOH D 119 2219 94 HOH HOH . 
F 5 HOH D 120 2220 139 HOH HOH . 
F 5 HOH D 121 2221 71 HOH HOH . 
F 5 HOH D 122 2222 119 HOH HOH . 
F 5 HOH D 123 2223 103 HOH HOH . 
F 5 HOH D 124 2224 164 HOH HOH . 
F 5 HOH D 125 2225 60 HOH HOH . 
F 5 HOH D 126 2226 118 HOH HOH . 
F 5 HOH D 127 2227 130 HOH HOH . 
F 5 HOH D 128 2228 129 HOH HOH . 
F 5 HOH D 129 2229 131 HOH HOH . 
F 5 HOH D 130 2230 125 HOH HOH . 
F 5 HOH D 131 2231 128 HOH HOH . 
F 5 HOH D 132 2232 165 HOH HOH . 
F 5 HOH D 133 2233 126 HOH HOH . 
F 5 HOH D 134 2234 145 HOH HOH . 
F 5 HOH D 135 2235 47 HOH HOH . 
F 5 HOH D 136 2236 117 HOH HOH . 
F 5 HOH D 137 2237 154 HOH HOH . 
F 5 HOH D 138 2238 89 HOH HOH . 
F 5 HOH D 139 2239 107 HOH HOH . 
F 5 HOH D 140 2240 140 HOH HOH . 
F 5 HOH D 141 2241 152 HOH HOH . 
F 5 HOH D 142 2242 132 HOH HOH . 
F 5 HOH D 143 2243 135 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               91.231 
_atom_site.Cartn_y               23.62 
_atom_site.Cartn_z               21.219 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        24.56 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           2001 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              78 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#