data_5EFB # _model_server_result.job_id UeGppg4bDXTKaPSunniQkQ _model_server_result.datetime_utc '2024-11-24 08:02:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5efb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2004}' # _entry.id 5EFB # _exptl.entry_id 5EFB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 342.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Oxamflatin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EFB _cell.length_a 83.447 _cell.length_b 94.431 _cell.length_c 51.611 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EFB _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 176 D ASP 610 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 A OD1 ASP 176 D ASP 610 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc3 A OD2 ASP 178 D ASP 612 1_555 B ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc4 A O ASP 178 D ASP 612 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? metalc ? metalc5 A ND1 HIS 180 D HIS 614 1_555 B ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc6 A O HIS 180 D HIS 614 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc7 A O PHE 189 D PHE 623 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc8 A O ASP 192 D ASP 626 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc9 A O VAL 195 D VAL 629 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc10 A OG SER 199 D SER 633 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc11 A O LEU 200 D LEU 634 1_555 C K K . D K 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc12 A O TYR 228 D TYR 662 1_555 D K K . D K 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc13 A OD2 ASP 271 D ASP 705 1_555 B ZN ZN . D ZN 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc14 B ZN ZN . D ZN 2001 1_555 E N12 5OK . D 5OK 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc15 B ZN ZN . D ZN 2001 1_555 E O13 5OK . D 5OK 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc16 B ZN ZN . D ZN 2001 1_555 E O14 5OK . D 5OK 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc17 D K K . D K 2003 1_555 F O HOH . D HOH 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc18 D K K . D K 2003 1_555 F O HOH . D HOH 2125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.215 ? # _chem_comp.formula 'C17 H14 N2 O4 S' _chem_comp.formula_weight 342.369 _chem_comp.id 5OK _chem_comp.mon_nstd_flag . _chem_comp.name Oxamflatin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C21 5OK doub 1 n y C20 C19 5OK sing 2 n y C21 C22 5OK sing 3 n y C19 C18 5OK doub 4 n y C22 C23 5OK doub 5 n y C18 C23 5OK sing 6 n y C18 S02 5OK sing 7 n n O24 S02 5OK doub 8 n n O01 S02 5OK doub 9 n n S02 N03 5OK sing 10 n n O14 C11 5OK doub 11 n n N03 C04 5OK sing 12 n n C09 C10 5OK doub 13 e n C09 C08 5OK sing 14 n n C11 C10 5OK sing 15 n n C11 N12 5OK sing 16 n n C05 C04 5OK doub 17 n y C05 C06 5OK sing 18 n y C08 C07 5OK trip 19 n n C04 C17 5OK sing 20 n y C07 C06 5OK sing 21 n n C06 C15 5OK doub 22 n y O13 N12 5OK sing 23 n n C17 C16 5OK doub 24 n y C15 C16 5OK sing 25 n y N03 H1 5OK sing 26 n n C05 H2 5OK sing 27 n n C09 H3 5OK sing 28 n n C10 H4 5OK sing 29 n n N12 H5 5OK sing 30 n n O13 H6 5OK sing 31 n n C15 H7 5OK sing 32 n n C16 H8 5OK sing 33 n n C17 H9 5OK sing 34 n n C19 H10 5OK sing 35 n n C20 H11 5OK sing 36 n n C21 H12 5OK sing 37 n n C22 H13 5OK sing 38 n n C23 H14 5OK sing 39 n n # _atom_sites.entry_id 5EFB _atom_sites.fract_transf_matrix[1][1] 0.011984 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN D 1 2001 2001 ZN ZN . C 3 K D 1 2002 2002 K K . D 3 K D 1 2003 2003 K K . E 4 5OK D 1 2004 1 5OK OXM . F 5 HOH D 1 2101 14 HOH HOH . F 5 HOH D 2 2102 2 HOH HOH . F 5 HOH D 3 2103 7 HOH HOH . F 5 HOH D 4 2104 44 HOH HOH . F 5 HOH D 5 2105 79 HOH HOH . F 5 HOH D 6 2106 11 HOH HOH . F 5 HOH D 7 2107 41 HOH HOH . F 5 HOH D 8 2108 86 HOH HOH . F 5 HOH D 9 2109 4 HOH HOH . F 5 HOH D 10 2110 65 HOH HOH . F 5 HOH D 11 2111 148 HOH HOH . F 5 HOH D 12 2112 58 HOH HOH . F 5 HOH D 13 2113 49 HOH HOH . F 5 HOH D 14 2114 9 HOH HOH . F 5 HOH D 15 2115 39 HOH HOH . F 5 HOH D 16 2116 48 HOH HOH . F 5 HOH D 17 2117 157 HOH HOH . F 5 HOH D 18 2118 27 HOH HOH . F 5 HOH D 19 2119 13 HOH HOH . F 5 HOH D 20 2120 134 HOH HOH . F 5 HOH D 21 2121 76 HOH HOH . F 5 HOH D 22 2122 45 HOH HOH . F 5 HOH D 23 2123 110 HOH HOH . F 5 HOH D 24 2124 15 HOH HOH . F 5 HOH D 25 2125 3 HOH HOH . F 5 HOH D 26 2126 8 HOH HOH . F 5 HOH D 27 2127 18 HOH HOH . F 5 HOH D 28 2128 52 HOH HOH . F 5 HOH D 29 2129 23 HOH HOH . F 5 HOH D 30 2130 25 HOH HOH . F 5 HOH D 31 2131 33 HOH HOH . F 5 HOH D 32 2132 21 HOH HOH . F 5 HOH D 33 2133 153 HOH HOH . F 5 HOH D 34 2134 59 HOH HOH . F 5 HOH D 35 2135 24 HOH HOH . F 5 HOH D 36 2136 1 HOH HOH . F 5 HOH D 37 2137 151 HOH HOH . F 5 HOH D 38 2138 155 HOH HOH . F 5 HOH D 39 2139 35 HOH HOH . F 5 HOH D 40 2140 12 HOH HOH . F 5 HOH D 41 2141 20 HOH HOH . F 5 HOH D 42 2142 93 HOH HOH . F 5 HOH D 43 2143 32 HOH HOH . F 5 HOH D 44 2144 72 HOH HOH . F 5 HOH D 45 2145 42 HOH HOH . F 5 HOH D 46 2146 143 HOH HOH . F 5 HOH D 47 2147 37 HOH HOH . F 5 HOH D 48 2148 16 HOH HOH . F 5 HOH D 49 2149 82 HOH HOH . F 5 HOH D 50 2150 159 HOH HOH . F 5 HOH D 51 2151 161 HOH HOH . F 5 HOH D 52 2152 22 HOH HOH . F 5 HOH D 53 2153 98 HOH HOH . F 5 HOH D 54 2154 64 HOH HOH . F 5 HOH D 55 2155 31 HOH HOH . F 5 HOH D 56 2156 51 HOH HOH . F 5 HOH D 57 2157 67 HOH HOH . F 5 HOH D 58 2158 108 HOH HOH . F 5 HOH D 59 2159 54 HOH HOH . F 5 HOH D 60 2160 26 HOH HOH . F 5 HOH D 61 2161 166 HOH HOH . F 5 HOH D 62 2162 56 HOH HOH . F 5 HOH D 63 2163 46 HOH HOH . F 5 HOH D 64 2164 19 HOH HOH . F 5 HOH D 65 2165 66 HOH HOH . F 5 HOH D 66 2166 100 HOH HOH . F 5 HOH D 67 2167 92 HOH HOH . F 5 HOH D 68 2168 28 HOH HOH . F 5 HOH D 69 2169 84 HOH HOH . F 5 HOH D 70 2170 75 HOH HOH . F 5 HOH D 71 2171 96 HOH HOH . F 5 HOH D 72 2172 162 HOH HOH . F 5 HOH D 73 2173 57 HOH HOH . F 5 HOH D 74 2174 40 HOH HOH . F 5 HOH D 75 2175 85 HOH HOH . F 5 HOH D 76 2176 62 HOH HOH . F 5 HOH D 77 2177 87 HOH HOH . F 5 HOH D 78 2178 30 HOH HOH . F 5 HOH D 79 2179 74 HOH HOH . F 5 HOH D 80 2180 34 HOH HOH . F 5 HOH D 81 2181 36 HOH HOH . F 5 HOH D 82 2182 95 HOH HOH . F 5 HOH D 83 2183 43 HOH HOH . F 5 HOH D 84 2184 53 HOH HOH . F 5 HOH D 85 2185 68 HOH HOH . F 5 HOH D 86 2186 99 HOH HOH . F 5 HOH D 87 2187 111 HOH HOH . F 5 HOH D 88 2188 168 HOH HOH . F 5 HOH D 89 2189 91 HOH HOH . F 5 HOH D 90 2190 123 HOH HOH . F 5 HOH D 91 2191 50 HOH HOH . F 5 HOH D 92 2192 10 HOH HOH . F 5 HOH D 93 2193 137 HOH HOH . F 5 HOH D 94 2194 17 HOH HOH . F 5 HOH D 95 2195 116 HOH HOH . F 5 HOH D 96 2196 114 HOH HOH . F 5 HOH D 97 2197 120 HOH HOH . F 5 HOH D 98 2198 113 HOH HOH . F 5 HOH D 99 2199 83 HOH HOH . F 5 HOH D 100 2200 122 HOH HOH . F 5 HOH D 101 2201 70 HOH HOH . F 5 HOH D 102 2202 112 HOH HOH . F 5 HOH D 103 2203 90 HOH HOH . F 5 HOH D 104 2204 61 HOH HOH . F 5 HOH D 105 2205 102 HOH HOH . F 5 HOH D 106 2206 121 HOH HOH . F 5 HOH D 107 2207 38 HOH HOH . F 5 HOH D 108 2208 150 HOH HOH . F 5 HOH D 109 2209 81 HOH HOH . F 5 HOH D 110 2210 124 HOH HOH . F 5 HOH D 111 2211 109 HOH HOH . F 5 HOH D 112 2212 101 HOH HOH . F 5 HOH D 113 2213 142 HOH HOH . F 5 HOH D 114 2214 167 HOH HOH . F 5 HOH D 115 2215 115 HOH HOH . F 5 HOH D 116 2216 133 HOH HOH . F 5 HOH D 117 2217 163 HOH HOH . F 5 HOH D 118 2218 169 HOH HOH . F 5 HOH D 119 2219 94 HOH HOH . F 5 HOH D 120 2220 139 HOH HOH . F 5 HOH D 121 2221 71 HOH HOH . F 5 HOH D 122 2222 119 HOH HOH . F 5 HOH D 123 2223 103 HOH HOH . F 5 HOH D 124 2224 164 HOH HOH . F 5 HOH D 125 2225 60 HOH HOH . F 5 HOH D 126 2226 118 HOH HOH . F 5 HOH D 127 2227 130 HOH HOH . F 5 HOH D 128 2228 129 HOH HOH . F 5 HOH D 129 2229 131 HOH HOH . F 5 HOH D 130 2230 125 HOH HOH . F 5 HOH D 131 2231 128 HOH HOH . F 5 HOH D 132 2232 165 HOH HOH . F 5 HOH D 133 2233 126 HOH HOH . F 5 HOH D 134 2234 145 HOH HOH . F 5 HOH D 135 2235 47 HOH HOH . F 5 HOH D 136 2236 117 HOH HOH . F 5 HOH D 137 2237 154 HOH HOH . F 5 HOH D 138 2238 89 HOH HOH . F 5 HOH D 139 2239 107 HOH HOH . F 5 HOH D 140 2240 140 HOH HOH . F 5 HOH D 141 2241 152 HOH HOH . F 5 HOH D 142 2242 132 HOH HOH . F 5 HOH D 143 2243 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 5OK . . . E 4 82.443 19.479 18.685 0.81 50.59 ? O01 5OK 2004 D 1 HETATM 2 S S02 5OK . . . E 4 81.375 18.516 18.793 0.81 43.81 ? S02 5OK 2004 D 1 HETATM 3 N N03 5OK . . . E 4 81.204 17.962 20.364 0.81 31.75 ? N03 5OK 2004 D 1 HETATM 4 C C04 5OK . . . E 4 82.371 17.665 21.198 0.81 28.7 ? C04 5OK 2004 D 1 HETATM 5 C C05 5OK . . . E 4 83.534 18.388 20.997 0.81 29.18 ? C05 5OK 2004 D 1 HETATM 6 C C06 5OK . . . E 4 84.691 18.175 21.73 0.81 23.01 ? C06 5OK 2004 D 1 HETATM 7 C C07 5OK . . . E 4 85.913 19 21.414 0.81 17.03 ? C07 5OK 2004 D 1 HETATM 8 C C08 5OK . . . E 4 86.874 19.666 21.191 0.81 18.38 ? C08 5OK 2004 D 1 HETATM 9 C C09 5OK . . . E 4 88.072 20.524 20.834 0.81 18.99 ? C09 5OK 2004 D 1 HETATM 10 C C10 5OK . . . E 4 89.318 20.061 21.065 0.81 14.72 ? C10 5OK 2004 D 1 HETATM 11 C C11 5OK . . . E 4 90.428 21.098 20.932 0.81 16.69 ? C11 5OK 2004 D 1 HETATM 12 N N12 5OK . . . E 4 91.474 21.085 21.919 0.81 15.23 ? N12 5OK 2004 D 1 HETATM 13 O O13 5OK . . . E 4 92.512 21.986 21.899 0.81 18.63 ? O13 5OK 2004 D 1 HETATM 14 O O14 5OK . . . E 4 90.381 21.914 20.017 0.81 12.72 ? O14 5OK 2004 D 1 HETATM 15 C C15 5OK . . . E 4 84.72 17.197 22.7 0.81 23.77 ? C15 5OK 2004 D 1 HETATM 16 C C16 5OK . . . E 4 83.569 16.454 22.923 0.81 18.99 ? C16 5OK 2004 D 1 HETATM 17 C C17 5OK . . . E 4 82.405 16.681 22.181 0.81 26.37 ? C17 5OK 2004 D 1 HETATM 18 C C18 5OK . . . E 4 81.853 17.211 17.67 0.81 36.65 ? C18 5OK 2004 D 1 HETATM 19 C C19 5OK . . . E 4 81.029 16.519 16.764 0.81 38.76 ? C19 5OK 2004 D 1 HETATM 20 C C20 5OK . . . E 4 81.62 15.52 15.965 0.81 33.67 ? C20 5OK 2004 D 1 HETATM 21 C C21 5OK . . . E 4 82.99 15.266 16.099 0.81 37.97 ? C21 5OK 2004 D 1 HETATM 22 C C22 5OK . . . E 4 83.785 15.977 16.997 0.81 36.78 ? C22 5OK 2004 D 1 HETATM 23 C C23 5OK . . . E 4 83.204 16.958 17.78 0.81 33.5 ? C23 5OK 2004 D 1 HETATM 24 O O24 5OK . . . E 4 80.243 19.22 18.297 0.81 46.87 ? O24 5OK 2004 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #