data_5EFC # _model_server_result.job_id Nh49HGdfuKJMPWp-tQt0BQ _model_server_result.datetime_utc '2024-11-09 02:45:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5efc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5EFC # _exptl.entry_id 5EFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EFC _cell.length_a 40.515 _cell.length_b 46.93 _cell.length_c 87.952 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 5EFC _atom_sites.fract_transf_matrix[1][1] 0.024682 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01137 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTP A 1 501 1 GTP GTP . C 3 HOH A 1 601 78 HOH HOH . C 3 HOH A 2 602 49 HOH HOH . C 3 HOH A 3 603 5 HOH HOH . C 3 HOH A 4 604 98 HOH HOH . C 3 HOH A 5 605 42 HOH HOH . C 3 HOH A 6 606 71 HOH HOH . C 3 HOH A 7 607 40 HOH HOH . C 3 HOH A 8 608 91 HOH HOH . C 3 HOH A 9 609 22 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 83 HOH HOH . C 3 HOH A 12 612 66 HOH HOH . C 3 HOH A 13 613 70 HOH HOH . C 3 HOH A 14 614 1 HOH HOH . C 3 HOH A 15 615 20 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 61 HOH HOH . C 3 HOH A 18 618 34 HOH HOH . C 3 HOH A 19 619 26 HOH HOH . C 3 HOH A 20 620 81 HOH HOH . C 3 HOH A 21 621 3 HOH HOH . C 3 HOH A 22 622 53 HOH HOH . C 3 HOH A 23 623 29 HOH HOH . C 3 HOH A 24 624 38 HOH HOH . C 3 HOH A 25 625 80 HOH HOH . C 3 HOH A 26 626 31 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 2 HOH HOH . C 3 HOH A 29 629 74 HOH HOH . C 3 HOH A 30 630 57 HOH HOH . C 3 HOH A 31 631 15 HOH HOH . C 3 HOH A 32 632 13 HOH HOH . C 3 HOH A 33 633 62 HOH HOH . C 3 HOH A 34 634 14 HOH HOH . C 3 HOH A 35 635 92 HOH HOH . C 3 HOH A 36 636 51 HOH HOH . C 3 HOH A 37 637 73 HOH HOH . C 3 HOH A 38 638 75 HOH HOH . C 3 HOH A 39 639 7 HOH HOH . C 3 HOH A 40 640 8 HOH HOH . C 3 HOH A 41 641 54 HOH HOH . C 3 HOH A 42 642 46 HOH HOH . C 3 HOH A 43 643 89 HOH HOH . C 3 HOH A 44 644 55 HOH HOH . C 3 HOH A 45 645 52 HOH HOH . C 3 HOH A 46 646 58 HOH HOH . C 3 HOH A 47 647 4 HOH HOH . C 3 HOH A 48 648 33 HOH HOH . C 3 HOH A 49 649 16 HOH HOH . C 3 HOH A 50 650 19 HOH HOH . C 3 HOH A 51 651 56 HOH HOH . C 3 HOH A 52 652 6 HOH HOH . C 3 HOH A 53 653 24 HOH HOH . C 3 HOH A 54 654 23 HOH HOH . C 3 HOH A 55 655 43 HOH HOH . C 3 HOH A 56 656 44 HOH HOH . C 3 HOH A 57 657 90 HOH HOH . C 3 HOH A 58 658 37 HOH HOH . C 3 HOH A 59 659 59 HOH HOH . C 3 HOH A 60 660 69 HOH HOH . C 3 HOH A 61 661 85 HOH HOH . C 3 HOH A 62 662 64 HOH HOH . C 3 HOH A 63 663 47 HOH HOH . C 3 HOH A 64 664 36 HOH HOH . C 3 HOH A 65 665 21 HOH HOH . C 3 HOH A 66 666 11 HOH HOH . C 3 HOH A 67 667 60 HOH HOH . C 3 HOH A 68 668 30 HOH HOH . C 3 HOH A 69 669 18 HOH HOH . C 3 HOH A 70 670 35 HOH HOH . C 3 HOH A 71 671 9 HOH HOH . C 3 HOH A 72 672 41 HOH HOH . C 3 HOH A 73 673 28 HOH HOH . C 3 HOH A 74 674 96 HOH HOH . C 3 HOH A 75 675 65 HOH HOH . C 3 HOH A 76 676 25 HOH HOH . C 3 HOH A 77 677 39 HOH HOH . C 3 HOH A 78 678 77 HOH HOH . C 3 HOH A 79 679 79 HOH HOH . C 3 HOH A 80 680 72 HOH HOH . C 3 HOH A 81 681 76 HOH HOH . C 3 HOH A 82 682 68 HOH HOH . C 3 HOH A 83 683 12 HOH HOH . C 3 HOH A 84 684 67 HOH HOH . C 3 HOH A 85 685 50 HOH HOH . C 3 HOH A 86 686 97 HOH HOH . C 3 HOH A 87 687 95 HOH HOH . C 3 HOH A 88 688 88 HOH HOH . C 3 HOH A 89 689 94 HOH HOH . C 3 HOH A 90 690 45 HOH HOH . C 3 HOH A 91 691 86 HOH HOH . C 3 HOH A 92 692 93 HOH HOH . C 3 HOH A 93 693 82 HOH HOH . C 3 HOH A 94 694 84 HOH HOH . C 3 HOH A 95 695 63 HOH HOH . C 3 HOH A 96 696 48 HOH HOH . C 3 HOH A 97 697 32 HOH HOH . C 3 HOH A 98 698 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . B 2 28.137 28.964 24.362 1 85.84 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . B 2 28.196 29.554 22.971 1 86.61 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . B 2 26.853 28.194 24.582 1 85.04 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . B 2 28.193 30.084 25.377 1 85.1 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . B 2 29.391 27.981 24.619 1 86.83 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . B 2 30.069 27.116 23.436 1 90.43 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . B 2 29.032 26.212 22.809 1 89.31 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . B 2 31.21 26.294 23.994 1 88.15 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . B 2 30.634 28.148 22.324 1 79.23 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . B 2 31.782 29.267 22.548 1 59.29 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . B 2 31.531 30.405 21.588 1 56.5 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . B 2 33.165 28.695 22.331 1 54.6 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . B 2 31.631 29.831 24.055 1 42.7 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . B 2 32.355 29.335 25.161 1 33.18 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . B 2 32.402 30.41 26.248 1 28.36 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . B 2 33.429 31.333 25.925 1 23.2 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . B 2 31.117 31.216 26.346 1 33.65 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . B 2 30.861 31.466 27.708 1 35.25 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . B 2 31.422 32.546 25.692 1 27.1 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . B 2 30.804 33.593 26.412 1 31.62 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . B 2 32.933 32.655 25.801 1 21.96 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . B 2 33.57 33.284 24.624 1 23.61 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . B 2 33.246 33.134 23.299 1 28.3 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . B 2 34.109 33.866 22.554 1 27.91 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . B 2 34.978 34.486 23.388 1 21.69 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . B 2 36.05 35.337 23.165 1 25.92 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . B 2 36.354 35.675 22.019 1 29.11 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . B 2 36.768 35.801 24.245 1 23.69 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . B 2 36.432 35.419 25.525 1 24.01 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . B 2 37.125 35.861 26.571 1 23.01 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . B 2 35.365 34.576 25.736 1 24.08 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . B 2 34.655 34.113 24.682 1 22.99 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 32 #