data_5EFF # _model_server_result.job_id JDgCxga2wmDqYJo3BIRY6Q _model_server_result.datetime_utc '2024-10-20 00:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eff # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5EFF # _exptl.entry_id 5EFF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EFF _cell.length_a 52.62 _cell.length_b 67.71 _cell.length_c 181.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EFF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 19 A SER 18 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc2 A OD1 ASN 293 A ASN 292 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc3 A O ASP 303 A ASP 302 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc4 A O LEU 306 A LEU 305 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 A O ARG 352 A ARG 351 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc6 A OD1 ASP 355 A ASP 354 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc7 B O SER 19 B SER 18 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc8 B OD1 ASN 293 B ASN 292 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc9 B O ASP 303 B ASP 302 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc10 B O LEU 306 B LEU 305 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc11 B O ARG 352 B ARG 351 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc12 B OD1 ASP 355 B ASP 354 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc13 E MG MG . B MG 401 1_555 I O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc14 E MG MG . B MG 401 1_555 I O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc15 E MG MG . B MG 401 1_555 I O HOH . B HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EFF _atom_sites.fract_transf_matrix[1][1] 0.019004 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 2 MG MG . D 3 NA A 1 402 2 NA NA . E 2 MG B 1 401 1 MG MG . F 3 NA B 1 402 1 NA NA . G 4 CL B 1 403 1 CL CL . H 5 HOH A 1 501 46 HOH HOH . H 5 HOH A 2 502 99 HOH HOH . H 5 HOH A 3 503 33 HOH HOH . H 5 HOH A 4 504 34 HOH HOH . H 5 HOH A 5 505 38 HOH HOH . H 5 HOH A 6 506 83 HOH HOH . H 5 HOH A 7 507 64 HOH HOH . H 5 HOH A 8 508 32 HOH HOH . H 5 HOH A 9 509 24 HOH HOH . H 5 HOH A 10 510 9 HOH HOH . H 5 HOH A 11 511 21 HOH HOH . H 5 HOH A 12 512 77 HOH HOH . H 5 HOH A 13 513 67 HOH HOH . H 5 HOH A 14 514 90 HOH HOH . H 5 HOH A 15 515 58 HOH HOH . H 5 HOH A 16 516 85 HOH HOH . H 5 HOH A 17 517 59 HOH HOH . H 5 HOH A 18 518 16 HOH HOH . H 5 HOH A 19 519 95 HOH HOH . H 5 HOH A 20 520 103 HOH HOH . H 5 HOH A 21 521 94 HOH HOH . H 5 HOH A 22 522 8 HOH HOH . H 5 HOH A 23 523 84 HOH HOH . H 5 HOH A 24 524 14 HOH HOH . H 5 HOH A 25 525 60 HOH HOH . H 5 HOH A 26 526 15 HOH HOH . H 5 HOH A 27 527 25 HOH HOH . H 5 HOH A 28 528 30 HOH HOH . H 5 HOH A 29 529 76 HOH HOH . H 5 HOH A 30 530 82 HOH HOH . H 5 HOH A 31 531 96 HOH HOH . H 5 HOH A 32 532 68 HOH HOH . H 5 HOH A 33 533 44 HOH HOH . H 5 HOH A 34 534 104 HOH HOH . H 5 HOH A 35 535 62 HOH HOH . H 5 HOH A 36 536 2 HOH HOH . H 5 HOH A 37 537 39 HOH HOH . H 5 HOH A 38 538 98 HOH HOH . H 5 HOH A 39 539 97 HOH HOH . H 5 HOH A 40 540 12 HOH HOH . H 5 HOH A 41 541 20 HOH HOH . H 5 HOH A 42 542 27 HOH HOH . H 5 HOH A 43 543 78 HOH HOH . H 5 HOH A 44 544 54 HOH HOH . I 5 HOH B 1 501 79 HOH HOH . I 5 HOH B 2 502 120 HOH HOH . I 5 HOH B 3 503 88 HOH HOH . I 5 HOH B 4 504 73 HOH HOH . I 5 HOH B 5 505 92 HOH HOH . I 5 HOH B 6 506 80 HOH HOH . I 5 HOH B 7 507 116 HOH HOH . I 5 HOH B 8 508 101 HOH HOH . I 5 HOH B 9 509 47 HOH HOH . I 5 HOH B 10 510 10 HOH HOH . I 5 HOH B 11 511 17 HOH HOH . I 5 HOH B 12 512 70 HOH HOH . I 5 HOH B 13 513 48 HOH HOH . I 5 HOH B 14 514 119 HOH HOH . I 5 HOH B 15 515 4 HOH HOH . I 5 HOH B 16 516 117 HOH HOH . I 5 HOH B 17 517 72 HOH HOH . I 5 HOH B 18 518 66 HOH HOH . I 5 HOH B 19 519 5 HOH HOH . I 5 HOH B 20 520 26 HOH HOH . I 5 HOH B 21 521 31 HOH HOH . I 5 HOH B 22 522 51 HOH HOH . I 5 HOH B 23 523 89 HOH HOH . I 5 HOH B 24 524 37 HOH HOH . I 5 HOH B 25 525 63 HOH HOH . I 5 HOH B 26 526 55 HOH HOH . I 5 HOH B 27 527 107 HOH HOH . I 5 HOH B 28 528 75 HOH HOH . I 5 HOH B 29 529 56 HOH HOH . I 5 HOH B 30 530 45 HOH HOH . I 5 HOH B 31 531 11 HOH HOH . I 5 HOH B 32 532 19 HOH HOH . I 5 HOH B 33 533 61 HOH HOH . I 5 HOH B 34 534 40 HOH HOH . I 5 HOH B 35 535 6 HOH HOH . I 5 HOH B 36 536 53 HOH HOH . I 5 HOH B 37 537 102 HOH HOH . I 5 HOH B 38 538 86 HOH HOH . I 5 HOH B 39 539 106 HOH HOH . I 5 HOH B 40 540 36 HOH HOH . I 5 HOH B 41 541 42 HOH HOH . I 5 HOH B 42 542 43 HOH HOH . I 5 HOH B 43 543 57 HOH HOH . I 5 HOH B 44 544 22 HOH HOH . I 5 HOH B 45 545 105 HOH HOH . I 5 HOH B 46 546 74 HOH HOH . I 5 HOH B 47 547 115 HOH HOH . I 5 HOH B 48 548 23 HOH HOH . I 5 HOH B 49 549 52 HOH HOH . I 5 HOH B 50 550 35 HOH HOH . I 5 HOH B 51 551 29 HOH HOH . I 5 HOH B 52 552 13 HOH HOH . I 5 HOH B 53 553 109 HOH HOH . I 5 HOH B 54 554 100 HOH HOH . I 5 HOH B 55 555 108 HOH HOH . I 5 HOH B 56 556 118 HOH HOH . I 5 HOH B 57 557 65 HOH HOH . I 5 HOH B 58 558 28 HOH HOH . I 5 HOH B 59 559 49 HOH HOH . I 5 HOH B 60 560 110 HOH HOH . I 5 HOH B 61 561 18 HOH HOH . I 5 HOH B 62 562 87 HOH HOH . I 5 HOH B 63 563 1 HOH HOH . I 5 HOH B 64 564 111 HOH HOH . I 5 HOH B 65 565 41 HOH HOH . I 5 HOH B 66 566 71 HOH HOH . I 5 HOH B 67 567 114 HOH HOH . I 5 HOH B 68 568 3 HOH HOH . I 5 HOH B 69 569 50 HOH HOH . I 5 HOH B 70 570 93 HOH HOH . I 5 HOH B 71 571 112 HOH HOH . I 5 HOH B 72 572 69 HOH HOH . I 5 HOH B 73 573 91 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -6.187 _atom_site.Cartn_y 6.326 _atom_site.Cartn_z 62.481 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 13.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #