data_5EFW # _model_server_result.job_id CyPb2w0mYcEWZgIiGv1vMQ _model_server_result.datetime_utc '2024-11-01 10:24:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5efw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 5EFW # _exptl.entry_id 5EFW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EFW _cell.length_a 54.7 _cell.length_b 54.7 _cell.length_c 188.03 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EFW _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 5EFW _atom_sites.fract_transf_matrix[1][1] 0.018282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005318 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 FMN A 1 601 1547 FMN FMN . E 4 SO4 A 1 602 4 SO4 SO4 . F 4 SO4 A 1 603 1 SO4 SO4 . G 4 SO4 A 1 604 3 SO4 SO4 . H 4 SO4 A 1 605 6 SO4 SO4 . I 4 SO4 B 1 101 2 SO4 SO4 . J 4 SO4 B 1 102 5 SO4 SO4 . K 5 HOH A 1 701 39 HOH HOH . K 5 HOH A 2 702 33 HOH HOH . K 5 HOH A 3 703 1 HOH HOH . K 5 HOH A 4 704 20 HOH HOH . K 5 HOH A 5 705 122 HOH HOH . K 5 HOH A 6 706 44 HOH HOH . K 5 HOH A 7 707 12 HOH HOH . K 5 HOH A 8 708 10 HOH HOH . K 5 HOH A 9 709 85 HOH HOH . K 5 HOH A 10 710 110 HOH HOH . K 5 HOH A 11 711 91 HOH HOH . K 5 HOH A 12 712 111 HOH HOH . K 5 HOH A 13 713 65 HOH HOH . K 5 HOH A 14 714 38 HOH HOH . K 5 HOH A 15 715 109 HOH HOH . K 5 HOH A 16 716 14 HOH HOH . K 5 HOH A 17 717 108 HOH HOH . K 5 HOH A 18 718 36 HOH HOH . K 5 HOH A 19 719 97 HOH HOH . K 5 HOH A 20 720 72 HOH HOH . K 5 HOH A 21 721 32 HOH HOH . K 5 HOH A 22 722 13 HOH HOH . K 5 HOH A 23 723 92 HOH HOH . K 5 HOH A 24 724 27 HOH HOH . K 5 HOH A 25 725 9 HOH HOH . K 5 HOH A 26 726 24 HOH HOH . K 5 HOH A 27 727 81 HOH HOH . K 5 HOH A 28 728 113 HOH HOH . K 5 HOH A 29 729 126 HOH HOH . K 5 HOH A 30 730 115 HOH HOH . K 5 HOH A 31 731 62 HOH HOH . K 5 HOH A 32 732 120 HOH HOH . K 5 HOH A 33 733 18 HOH HOH . K 5 HOH A 34 734 2 HOH HOH . K 5 HOH A 35 735 37 HOH HOH . K 5 HOH A 36 736 8 HOH HOH . K 5 HOH A 37 737 63 HOH HOH . K 5 HOH A 38 738 96 HOH HOH . K 5 HOH A 39 739 112 HOH HOH . K 5 HOH A 40 740 56 HOH HOH . K 5 HOH A 41 741 3 HOH HOH . K 5 HOH A 42 742 118 HOH HOH . K 5 HOH A 43 743 116 HOH HOH . K 5 HOH A 44 744 90 HOH HOH . K 5 HOH A 45 745 25 HOH HOH . K 5 HOH A 46 746 48 HOH HOH . K 5 HOH A 47 747 73 HOH HOH . K 5 HOH A 48 748 95 HOH HOH . K 5 HOH A 49 749 121 HOH HOH . K 5 HOH A 50 750 106 HOH HOH . K 5 HOH A 51 751 77 HOH HOH . K 5 HOH A 52 752 67 HOH HOH . K 5 HOH A 53 753 107 HOH HOH . K 5 HOH A 54 754 114 HOH HOH . K 5 HOH A 55 755 46 HOH HOH . K 5 HOH A 56 756 98 HOH HOH . K 5 HOH A 57 757 103 HOH HOH . K 5 HOH A 58 758 125 HOH HOH . K 5 HOH A 59 759 100 HOH HOH . K 5 HOH A 60 760 47 HOH HOH . K 5 HOH A 61 761 101 HOH HOH . K 5 HOH A 62 762 99 HOH HOH . K 5 HOH A 63 763 102 HOH HOH . L 5 HOH B 1 201 66 HOH HOH . L 5 HOH B 2 202 29 HOH HOH . L 5 HOH B 3 203 59 HOH HOH . L 5 HOH B 4 204 123 HOH HOH . L 5 HOH B 5 205 19 HOH HOH . L 5 HOH B 6 206 71 HOH HOH . L 5 HOH B 7 207 7 HOH HOH . L 5 HOH B 8 208 117 HOH HOH . L 5 HOH B 9 209 76 HOH HOH . L 5 HOH B 10 210 104 HOH HOH . L 5 HOH B 11 211 80 HOH HOH . L 5 HOH B 12 212 84 HOH HOH . L 5 HOH B 13 213 70 HOH HOH . L 5 HOH B 14 214 83 HOH HOH . L 5 HOH B 15 215 124 HOH HOH . L 5 HOH B 16 216 105 HOH HOH . L 5 HOH B 17 217 87 HOH HOH . L 5 HOH B 18 218 69 HOH HOH . L 5 HOH B 19 219 93 HOH HOH . M 5 HOH C 1 101 4 HOH HOH . M 5 HOH C 2 102 127 HOH HOH . M 5 HOH C 3 103 89 HOH HOH . M 5 HOH C 4 104 51 HOH HOH . M 5 HOH C 5 105 22 HOH HOH . M 5 HOH C 6 106 68 HOH HOH . M 5 HOH C 7 107 26 HOH HOH . M 5 HOH C 8 108 88 HOH HOH . M 5 HOH C 9 109 119 HOH HOH . M 5 HOH C 10 110 28 HOH HOH . M 5 HOH C 11 111 94 HOH HOH . M 5 HOH C 12 112 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 -3.207 6.985 -17.237 1 19.87 ? N1 FMN 601 A 1 HETATM 2 C C2 FMN . . . D 3 -2.417 5.902 -17.568 1 23.12 ? C2 FMN 601 A 1 HETATM 3 O O2 FMN . . . D 3 -2.924 4.779 -17.662 1 23.08 ? O2 FMN 601 A 1 HETATM 4 N N3 FMN . . . D 3 -1.057 6.067 -17.733 1 20.97 ? N3 FMN 601 A 1 HETATM 5 C C4 FMN . . . D 3 -0.495 7.325 -17.617 1 19.88 ? C4 FMN 601 A 1 HETATM 6 O O4 FMN . . . D 3 0.719 7.45 -17.759 1 15.64 ? O4 FMN 601 A 1 HETATM 7 C C4A FMN . . . D 3 -1.304 8.43 -17.337 1 21.31 ? C4A FMN 601 A 1 HETATM 8 N N5 FMN . . . D 3 -0.771 9.702 -17.192 1 16.43 ? N5 FMN 601 A 1 HETATM 9 C C5A FMN . . . D 3 -1.579 10.768 -16.802 1 14.32 ? C5A FMN 601 A 1 HETATM 10 C C6 FMN . . . D 3 -1.007 11.996 -16.475 1 11.12 ? C6 FMN 601 A 1 HETATM 11 C C7 FMN . . . D 3 -1.795 13.017 -15.929 1 15.7 ? C7 FMN 601 A 1 HETATM 12 C C7M FMN . . . D 3 -1.159 14.311 -15.494 1 10.28 ? C7M FMN 601 A 1 HETATM 13 C C8 FMN . . . D 3 -3.141 12.784 -15.641 1 15.01 ? C8 FMN 601 A 1 HETATM 14 C C8M FMN . . . D 3 -3.992 13.871 -15.063 1 12.58 ? C8M FMN 601 A 1 HETATM 15 C C9 FMN . . . D 3 -3.709 11.556 -15.955 1 12.63 ? C9 FMN 601 A 1 HETATM 16 C C9A FMN . . . D 3 -2.93 10.548 -16.518 1 14.07 ? C9A FMN 601 A 1 HETATM 17 N N10 FMN . . . D 3 -3.476 9.298 -16.712 1 16.65 ? N10 FMN 601 A 1 HETATM 18 C C10 FMN . . . D 3 -2.663 8.241 -17.108 1 20.08 ? C10 FMN 601 A 1 HETATM 19 C C1' FMN . . . D 3 -4.841 8.985 -16.137 1 15.7 ? C1' FMN 601 A 1 HETATM 20 C C2' FMN . . . D 3 -5.967 9.108 -17.15 1 17.17 ? C2' FMN 601 A 1 HETATM 21 O O2' FMN . . . D 3 -5.788 10.269 -17.925 1 16.71 ? O2' FMN 601 A 1 HETATM 22 C C3' FMN . . . D 3 -7.328 9.241 -16.468 1 22.19 ? C3' FMN 601 A 1 HETATM 23 O O3' FMN . . . D 3 -7.333 10.294 -15.527 1 19.87 ? O3' FMN 601 A 1 HETATM 24 C C4' FMN . . . D 3 -7.804 8.003 -15.726 1 27.93 ? C4' FMN 601 A 1 HETATM 25 O O4' FMN . . . D 3 -8.046 6.932 -16.616 1 25.48 ? O4' FMN 601 A 1 HETATM 26 C C5' FMN . . . D 3 -9.097 8.437 -15.052 1 35.58 ? C5' FMN 601 A 1 HETATM 27 O O5' FMN . . . D 3 -10.057 7.421 -15.165 1 45.29 ? O5' FMN 601 A 1 HETATM 28 P P FMN . . . D 3 -11.266 7.472 -16.221 1 30.84 ? P FMN 601 A 1 HETATM 29 O O1P FMN . . . D 3 -10.705 6.908 -17.507 1 31.07 ? O1P FMN 601 A 1 HETATM 30 O O2P FMN . . . D 3 -11.804 8.854 -16.458 1 30.99 ? O2P FMN 601 A 1 HETATM 31 O O3P FMN . . . D 3 -12.356 6.574 -15.685 1 34.94 ? O3P FMN 601 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #