data_5EG1 # _model_server_result.job_id cdxnu4t9FQ3kx1chBzftDA _model_server_result.datetime_utc '2024-11-13 10:47:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 5EG1 # _exptl.entry_id 5EG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EG1 _cell.length_a 82.98 _cell.length_b 109.13 _cell.length_c 233.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 385 A SER 385 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc2 A OE1 GLN 426 A GLN 426 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc3 C O3G ANP . A ANP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 C O2B ANP . A ANP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc5 B OG SER 385 B SER 385 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc6 B OE1 GLN 426 B GLN 426 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 E O3G ANP . B ANP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc8 E O2B ANP . B ANP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5EG1 _atom_sites.fract_transf_matrix[1][1] 0.012051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 601 601 ANP ANP . D 3 MG A 1 602 602 MG MG . E 2 ANP B 1 601 601 ANP ANP . F 3 MG B 1 602 602 MG MG . G 4 P6L B 1 603 502 P6L P6L . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 2 18.156 117.83 242.285 1 117.81 ? PG ANP 601 B 1 HETATM 2 O O1G ANP . . . E 2 18.163 118.369 240.924 1 120.35 ? O1G ANP 601 B 1 HETATM 3 O O2G ANP . . . E 2 17.587 118.908 243.26 1 118.32 ? O2G ANP 601 B 1 HETATM 4 O O3G ANP . . . E 2 19.645 117.549 242.763 1 119.49 ? O3G ANP 601 B 1 HETATM 5 P PB ANP . . . E 2 17.665 114.853 242.522 1 114.23 ? PB ANP 601 B 1 HETATM 6 O O1B ANP . . . E 2 16.945 114.094 241.509 1 114.22 ? O1B ANP 601 B 1 HETATM 7 O O2B ANP . . . E 2 19.236 114.651 242.527 1 115.87 ? O2B ANP 601 B 1 HETATM 8 N N3B ANP . . . E 2 17.258 116.466 242.512 1 114.18 ? N3B ANP 601 B 1 HETATM 9 P PA ANP . . . E 2 17.446 113.584 245.217 1 114.66 ? PA ANP 601 B 1 HETATM 10 O O1A ANP . . . E 2 18.231 112.363 244.967 1 114.99 ? O1A ANP 601 B 1 HETATM 11 O O2A ANP . . . E 2 18.014 114.675 246.152 1 113.64 ? O2A ANP 601 B 1 HETATM 12 O O3A ANP . . . E 2 17.3 114.299 243.897 1 113.7 ? O3A ANP 601 B 1 HETATM 13 O O5' ANP . . . E 2 15.954 113.314 245.763 1 116.06 ? O5' ANP 601 B 1 HETATM 14 C C5' ANP . . . E 2 14.943 112.661 244.964 1 117.14 ? C5' ANP 601 B 1 HETATM 15 C C4' ANP . . . E 2 13.63 112.682 245.71 1 119.25 ? C4' ANP 601 B 1 HETATM 16 O O4' ANP . . . E 2 13.796 112.038 246.989 1 121.15 ? O4' ANP 601 B 1 HETATM 17 C C3' ANP . . . E 2 13.008 114.056 245.971 1 121.44 ? C3' ANP 601 B 1 HETATM 18 O O3' ANP . . . E 2 11.642 114.149 245.587 1 122.09 ? O3' ANP 601 B 1 HETATM 19 C C2' ANP . . . E 2 13.224 114.291 247.469 1 124.14 ? C2' ANP 601 B 1 HETATM 20 O O2' ANP . . . E 2 12.158 114.964 248.13 1 125.63 ? O2' ANP 601 B 1 HETATM 21 C C1' ANP . . . E 2 13.373 112.881 248.041 1 124.23 ? C1' ANP 601 B 1 HETATM 22 N N9 ANP . . . E 2 14.365 112.82 249.11 1 127.05 ? N9 ANP 601 B 1 HETATM 23 C C8 ANP . . . E 2 15.657 113.28 249.06 1 127.34 ? C8 ANP 601 B 1 HETATM 24 N N7 ANP . . . E 2 16.305 113.183 250.195 1 127.47 ? N7 ANP 601 B 1 HETATM 25 C C5 ANP . . . E 2 15.38 112.602 251.052 1 128.14 ? C5 ANP 601 B 1 HETATM 26 C C6 ANP . . . E 2 15.455 112.215 252.405 1 126.42 ? C6 ANP 601 B 1 HETATM 27 N N6 ANP . . . E 2 16.563 112.316 253.136 1 124.89 ? N6 ANP 601 B 1 HETATM 28 N N1 ANP . . . E 2 14.346 111.676 252.969 1 127.82 ? N1 ANP 601 B 1 HETATM 29 C C2 ANP . . . E 2 13.247 111.528 252.216 1 130.09 ? C2 ANP 601 B 1 HETATM 30 N N3 ANP . . . E 2 13.066 111.835 250.925 1 130.12 ? N3 ANP 601 B 1 HETATM 31 C C4 ANP . . . E 2 14.179 112.375 250.397 1 129.1 ? C4 ANP 601 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #