data_5EG1 # _model_server_result.job_id 79cLaVWxIWryaWpppXLViw _model_server_result.datetime_utc '2024-11-27 20:05:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eg1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":603}' # _entry.id 5EG1 # _exptl.entry_id 5EG1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 746.991 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EG1 _cell.length_a 82.98 _cell.length_b 109.13 _cell.length_c 233.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EG1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 385 A SER 385 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc2 A OE1 GLN 426 A GLN 426 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc3 C O3G ANP . A ANP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 C O2B ANP . A ANP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc5 B OG SER 385 B SER 385 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.899 ? metalc ? metalc6 B OE1 GLN 426 B GLN 426 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 E O3G ANP . B ANP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc8 E O2B ANP . B ANP 601 1_555 F MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C40 H75 O10 P' _chem_comp.formula_weight 746.991 _chem_comp.id P6L _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-3-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-2-[(6E)-HEXADEC-6-ENOYLOXY]PROPYL (8E)-OCTADEC-8-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 P6L sing 285 n n C1 O12 P6L sing 286 n n C1 H11 P6L sing 287 n n C1 H12 P6L sing 288 n n C2 O3 P6L sing 289 n n C2 C50 P6L sing 290 n n C2 H2 P6L sing 291 n n O3 HO3 P6L sing 292 n n O4 C5 P6L sing 293 n n O4 C14 P6L sing 294 n n C5 C6 P6L sing 295 n n C5 C7 P6L sing 296 n n C5 H5 P6L sing 297 n n C6 O8 P6L sing 298 n n C6 H61 P6L sing 299 n n C6 H62 P6L sing 300 n n C7 O9 P6L sing 301 n n C7 H71 P6L sing 302 n n C7 H72 P6L sing 303 n n O8 C16 P6L sing 304 n n O9 P11 P6L sing 305 n n O10 P11 P6L doub 306 n n P11 O12 P6L sing 307 n n P11 O13 P6L sing 308 n n O13 H13 P6L sing 309 n n C14 O15 P6L doub 310 n n C14 C18 P6L sing 311 n n C16 O17 P6L doub 312 n n C16 C27 P6L sing 313 n n C18 C19 P6L sing 314 n n C18 H181 P6L sing 315 n n C18 H182 P6L sing 316 n n C19 C20 P6L sing 317 n n C19 H191 P6L sing 318 n n C19 H192 P6L sing 319 n n C20 C21 P6L sing 320 n n C20 H201 P6L sing 321 n n C20 H202 P6L sing 322 n n C21 C22 P6L sing 323 n n C21 H211 P6L sing 324 n n C21 H212 P6L sing 325 n n C22 C23 P6L doub 326 z n C22 H22 P6L sing 327 n n C23 C24 P6L sing 328 n n C23 H23 P6L sing 329 n n C24 C25 P6L sing 330 n n C24 H241 P6L sing 331 n n C24 H242 P6L sing 332 n n C25 C26 P6L sing 333 n n C25 H251 P6L sing 334 n n C25 H252 P6L sing 335 n n C26 C37 P6L sing 336 n n C26 H261 P6L sing 337 n n C26 H262 P6L sing 338 n n C27 C28 P6L sing 339 n n C27 H271 P6L sing 340 n n C27 H272 P6L sing 341 n n C28 C29 P6L sing 342 n n C28 H281 P6L sing 343 n n C28 H282 P6L sing 344 n n C29 C30 P6L sing 345 n n C29 H291 P6L sing 346 n n C29 H292 P6L sing 347 n n C30 C31 P6L sing 348 n n C30 H301 P6L sing 349 n n C30 H302 P6L sing 350 n n C31 C32 P6L sing 351 n n C31 H311 P6L sing 352 n n C31 H312 P6L sing 353 n n C32 C33 P6L sing 354 n n C32 H321 P6L sing 355 n n C32 H322 P6L sing 356 n n C33 C34 P6L doub 357 e n C33 H33 P6L sing 358 n n C34 C35 P6L sing 359 n n C34 H34 P6L sing 360 n n C35 C36 P6L sing 361 n n C35 H351 P6L sing 362 n n C35 H352 P6L sing 363 n n C36 C38 P6L sing 364 n n C36 H361 P6L sing 365 n n C36 H362 P6L sing 366 n n C37 C45 P6L sing 367 n n C37 H371 P6L sing 368 n n C37 H372 P6L sing 369 n n C38 C39 P6L sing 370 n n C38 H381 P6L sing 371 n n C38 H382 P6L sing 372 n n C39 C40 P6L sing 373 n n C39 H391 P6L sing 374 n n C39 H392 P6L sing 375 n n C40 C41 P6L sing 376 n n C40 H401 P6L sing 377 n n C40 H402 P6L sing 378 n n C41 C42 P6L sing 379 n n C41 H411 P6L sing 380 n n C41 H412 P6L sing 381 n n C42 C43 P6L sing 382 n n C42 H421 P6L sing 383 n n C42 H422 P6L sing 384 n n C43 C44 P6L sing 385 n n C43 H431 P6L sing 386 n n C43 H432 P6L sing 387 n n C44 H441 P6L sing 388 n n C44 H442 P6L sing 389 n n C44 H443 P6L sing 390 n n C45 C46 P6L sing 391 n n C45 H451 P6L sing 392 n n C45 H452 P6L sing 393 n n C46 C47 P6L sing 394 n n C46 H461 P6L sing 395 n n C46 H462 P6L sing 396 n n C47 C48 P6L sing 397 n n C47 H471 P6L sing 398 n n C47 H472 P6L sing 399 n n C48 C49 P6L sing 400 n n C48 H481 P6L sing 401 n n C48 H482 P6L sing 402 n n C49 H491 P6L sing 403 n n C49 H492 P6L sing 404 n n C49 H493 P6L sing 405 n n C50 O51 P6L sing 406 n n C50 H501 P6L sing 407 n n C50 H502 P6L sing 408 n n O51 H51 P6L sing 409 n n # _atom_sites.entry_id 5EG1 _atom_sites.fract_transf_matrix[1][1] 0.012051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 601 601 ANP ANP . D 3 MG A 1 602 602 MG MG . E 2 ANP B 1 601 601 ANP ANP . F 3 MG B 1 602 602 MG MG . G 4 P6L B 1 603 502 P6L P6L . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P6L . . . G 4 8.907 95.918 295.212 1 212.59 ? C1 P6L 603 B 1 HETATM 2 C C2 P6L . . . G 4 7.442 96.217 295.445 1 210.36 ? C2 P6L 603 B 1 HETATM 3 O O3 P6L . . . G 4 7.254 96.536 296.826 1 208.51 ? O3 P6L 603 B 1 HETATM 4 O O4 P6L . . . G 4 9.07 89.533 295.909 1 205.28 ? O4 P6L 603 B 1 HETATM 5 C C5 P6L . . . G 4 8.622 90.838 295.4 1 208.6 ? C5 P6L 603 B 1 HETATM 6 C C6 P6L . . . G 4 7.534 91.581 296.162 1 207.62 ? C6 P6L 603 B 1 HETATM 7 C C7 P6L . . . G 4 9.926 91.583 295.18 1 212.05 ? C7 P6L 603 B 1 HETATM 8 O O8 P6L . . . G 4 8.054 92.758 296.829 1 205.85 ? O8 P6L 603 B 1 HETATM 9 O O9 P6L . . . G 4 9.786 93.022 295.104 1 214.84 ? O9 P6L 603 B 1 HETATM 10 O O10 P6L . . . G 4 9.482 93.118 292.54 1 217.71 ? O10 P6L 603 B 1 HETATM 11 P P11 P6L . . . G 4 9.923 93.881 293.736 1 216.8 ? P11 P6L 603 B 1 HETATM 12 O O12 P6L . . . G 4 9.103 95.26 293.938 1 214.99 ? O12 P6L 603 B 1 HETATM 13 O O13 P6L . . . G 4 11.402 94.259 293.566 1 217.31 ? O13 P6L 603 B 1 HETATM 14 C C14 P6L . . . G 4 8.738 89.069 297.136 1 201.39 ? C14 P6L 603 B 1 HETATM 15 O O15 P6L . . . G 4 7.639 89.142 297.619 1 201.54 ? O15 P6L 603 B 1 HETATM 16 C C16 P6L . . . G 4 7.582 93.113 298.028 1 202.58 ? C16 P6L 603 B 1 HETATM 17 O O17 P6L . . . G 4 6.55 92.709 298.498 1 201.95 ? O17 P6L 603 B 1 HETATM 18 C C18 P6L . . . G 4 9.927 88.452 297.809 1 196.92 ? C18 P6L 603 B 1 HETATM 19 C C19 P6L . . . G 4 10.636 89.456 298.71 1 192.09 ? C19 P6L 603 B 1 HETATM 20 C C20 P6L . . . G 4 11.966 88.963 299.255 1 187.37 ? C20 P6L 603 B 1 HETATM 21 C C21 P6L . . . G 4 13.178 89.316 298.384 1 183.14 ? C21 P6L 603 B 1 HETATM 22 C C22 P6L . . . G 4 14.469 89.496 299.134 1 178.94 ? C22 P6L 603 B 1 HETATM 23 C C23 P6L . . . G 4 14.648 89.483 300.443 1 175.04 ? C23 P6L 603 B 1 HETATM 24 C C24 P6L . . . G 4 15.944 89.674 301.144 1 171.79 ? C24 P6L 603 B 1 HETATM 25 C C25 P6L . . . G 4 15.803 90.155 302.595 1 168.64 ? C25 P6L 603 B 1 HETATM 26 C C26 P6L . . . G 4 16.709 91.309 303.025 1 165.64 ? C26 P6L 603 B 1 HETATM 27 C C27 P6L . . . G 4 8.512 94.085 298.701 1 199.41 ? C27 P6L 603 B 1 HETATM 28 C C28 P6L . . . G 4 9.838 93.475 299.16 1 195.67 ? C28 P6L 603 B 1 HETATM 29 C C29 P6L . . . G 4 11.001 93.74 298.208 1 191.51 ? C29 P6L 603 B 1 HETATM 30 C C30 P6L . . . G 4 12.294 94.162 298.899 1 187.45 ? C30 P6L 603 B 1 HETATM 31 C C31 P6L . . . G 4 13.248 93.035 299.287 1 182.54 ? C31 P6L 603 B 1 HETATM 32 C C32 P6L . . . G 4 14.104 93.295 300.546 1 176.4 ? C32 P6L 603 B 1 HETATM 33 C C33 P6L . . . G 4 15.263 94.245 300.375 1 170.32 ? C33 P6L 603 B 1 HETATM 34 C C34 P6L . . . G 4 15.906 94.904 301.327 1 166.05 ? C34 P6L 603 B 1 HETATM 35 C C35 P6L . . . G 4 15.636 94.861 302.806 1 163.38 ? C35 P6L 603 B 1 HETATM 36 C C36 P6L . . . G 4 16.833 95.323 303.626 1 161.28 ? C36 P6L 603 B 1 HETATM 37 C C37 P6L . . . G 4 18.164 91.304 302.557 1 162.54 ? C37 P6L 603 B 1 HETATM 38 C C38 P6L . . . G 4 16.77 94.955 305.099 1 159.58 ? C38 P6L 603 B 1 HETATM 39 C C39 P6L . . . G 4 17.913 95.543 305.913 1 157.82 ? C39 P6L 603 B 1 HETATM 40 C C40 P6L . . . G 4 17.573 95.843 307.367 1 154.89 ? C40 P6L 603 B 1 HETATM 41 C C41 P6L . . . G 4 18.42 96.947 307.991 1 151.36 ? C41 P6L 603 B 1 HETATM 42 C C42 P6L . . . G 4 19.279 96.511 309.165 1 148.74 ? C42 P6L 603 B 1 HETATM 43 C C43 P6L . . . G 4 18.53 96.237 310.458 1 147.54 ? C43 P6L 603 B 1 HETATM 44 C C44 P6L . . . G 4 19.361 95.483 311.471 1 146.49 ? C44 P6L 603 B 1 HETATM 45 C C45 P6L . . . G 4 18.412 92.18 301.333 1 159.06 ? C45 P6L 603 B 1 HETATM 46 C C46 P6L . . . G 4 19.844 92.657 301.143 1 155.36 ? C46 P6L 603 B 1 HETATM 47 C C47 P6L . . . G 4 20.165 94.06 301.659 1 151.65 ? C47 P6L 603 B 1 HETATM 48 C C48 P6L . . . G 4 20.212 94.256 303.18 1 148.98 ? C48 P6L 603 B 1 HETATM 49 C C49 P6L . . . G 4 21.179 93.34 303.915 1 147.83 ? C49 P6L 603 B 1 HETATM 50 C C50 P6L . . . G 4 6.536 95.074 295.046 1 210.67 ? C50 P6L 603 B 1 HETATM 51 O O51 P6L . . . G 4 5.173 95.387 295.282 1 211.22 ? O51 P6L 603 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 51 #