data_5EG7 # _model_server_result.job_id 93RZfJ6HAC2GFVenVcQJXg _model_server_result.datetime_utc '2024-11-20 11:23:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5EG7 # _exptl.entry_id 5EG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EG7 _cell.length_a 45.262 _cell.length_b 45.262 _cell.length_c 156.451 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 250 n n PG O2G MGT sing 251 n n PG O3G MGT sing 252 n n PG O3B MGT sing 253 n n O2G HOG2 MGT sing 254 n n O3G HOG3 MGT sing 255 n n O3B PB MGT sing 256 n n PB O1B MGT doub 257 n n PB O2B MGT sing 258 n n PB O3A MGT sing 259 n n O2B HOB2 MGT sing 260 n n O3A PA MGT sing 261 n n PA O1A MGT doub 262 n n PA O2A MGT sing 263 n n PA O5' MGT sing 264 n n O2A HOA2 MGT sing 265 n n O5' C5' MGT sing 266 n n C5' C4' MGT sing 267 n n C5' "H5'1" MGT sing 268 n n C5' "H5'2" MGT sing 269 n n C4' O4' MGT sing 270 n n C4' C3' MGT sing 271 n n C4' H4' MGT sing 272 n n O4' C1' MGT sing 273 n n C3' O3' MGT sing 274 n n C3' C2' MGT sing 275 n n C3' H3' MGT sing 276 n n O3' HO3' MGT sing 277 n n C2' O2' MGT sing 278 n n C2' C1' MGT sing 279 n n C2' H2' MGT sing 280 n n O2' HO2' MGT sing 281 n n C1' N9 MGT sing 282 n n C1' H1' MGT sing 283 n n N9 C8 MGT sing 284 n n N9 C4 MGT sing 285 n n C8 N7 MGT sing 286 n n C8 H81 MGT sing 287 n n C8 H82 MGT sing 288 n n N7 CM7 MGT sing 289 n n N7 C5 MGT sing 290 n n CM7 HM71 MGT sing 291 n n CM7 HM72 MGT sing 292 n n CM7 HM73 MGT sing 293 n n C5 C6 MGT sing 294 n n C5 C4 MGT doub 295 n n C6 O6 MGT doub 296 n n C6 N1 MGT sing 297 n n N1 C2 MGT sing 298 n n N1 HN1 MGT sing 299 n n C2 N2 MGT sing 300 n n C2 N3 MGT doub 301 n n N2 HN21 MGT sing 302 n n N2 HN22 MGT sing 303 n n N3 C4 MGT sing 304 n n # _atom_sites.entry_id 5EG7 _atom_sites.fract_transf_matrix[1][1] 0.022094 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MGT A 1 501 1484 MGT MGT . C 3 GOL A 1 502 501 GOL GOL . D 4 HOH A 1 601 6 HOH HOH . D 4 HOH A 2 602 18 HOH HOH . D 4 HOH A 3 603 95 HOH HOH . D 4 HOH A 4 604 49 HOH HOH . D 4 HOH A 5 605 3 HOH HOH . D 4 HOH A 6 606 69 HOH HOH . D 4 HOH A 7 607 7 HOH HOH . D 4 HOH A 8 608 14 HOH HOH . D 4 HOH A 9 609 19 HOH HOH . D 4 HOH A 10 610 7 HOH HOH . D 4 HOH A 11 611 84 HOH HOH . D 4 HOH A 12 612 20 HOH HOH . D 4 HOH A 13 613 18 HOH HOH . D 4 HOH A 14 614 2 HOH HOH . D 4 HOH A 15 615 58 HOH HOH . D 4 HOH A 16 616 10 HOH HOH . D 4 HOH A 17 617 13 HOH HOH . D 4 HOH A 18 618 4 HOH HOH . D 4 HOH A 19 619 37 HOH HOH . D 4 HOH A 20 620 9 HOH HOH . D 4 HOH A 21 621 15 HOH HOH . D 4 HOH A 22 622 5 HOH HOH . D 4 HOH A 23 623 1 HOH HOH . D 4 HOH A 24 624 7 HOH HOH . D 4 HOH A 25 625 5 HOH HOH . D 4 HOH A 26 626 14 HOH HOH . D 4 HOH A 27 627 25 HOH HOH . D 4 HOH A 28 628 3 HOH HOH . D 4 HOH A 29 629 100 HOH HOH . D 4 HOH A 30 630 29 HOH HOH . D 4 HOH A 31 631 4 HOH HOH . D 4 HOH A 32 632 32 HOH HOH . D 4 HOH A 33 633 12 HOH HOH . D 4 HOH A 34 634 61 HOH HOH . D 4 HOH A 35 635 45 HOH HOH . D 4 HOH A 36 636 1 HOH HOH . D 4 HOH A 37 637 21 HOH HOH . D 4 HOH A 38 638 14 HOH HOH . D 4 HOH A 39 639 22 HOH HOH . D 4 HOH A 40 640 117 HOH HOH . D 4 HOH A 41 641 107 HOH HOH . D 4 HOH A 42 642 159 HOH HOH . D 4 HOH A 43 643 110 HOH HOH . D 4 HOH A 44 644 2 HOH HOH . D 4 HOH A 45 645 1 HOH HOH . D 4 HOH A 46 646 1 HOH HOH . D 4 HOH A 47 647 23 HOH HOH . D 4 HOH A 48 648 89 HOH HOH . D 4 HOH A 49 649 37 HOH HOH . D 4 HOH A 50 650 23 HOH HOH . D 4 HOH A 51 651 5 HOH HOH . D 4 HOH A 52 652 94 HOH HOH . D 4 HOH A 53 653 4 HOH HOH . D 4 HOH A 54 654 20 HOH HOH . D 4 HOH A 55 655 54 HOH HOH . D 4 HOH A 56 656 10 HOH HOH . D 4 HOH A 57 657 30 HOH HOH . D 4 HOH A 58 658 2 HOH HOH . D 4 HOH A 59 659 40 HOH HOH . D 4 HOH A 60 660 2 HOH HOH . D 4 HOH A 61 661 31 HOH HOH . D 4 HOH A 62 662 161 HOH HOH . D 4 HOH A 63 663 100 HOH HOH . D 4 HOH A 64 664 63 HOH HOH . D 4 HOH A 65 665 11 HOH HOH . D 4 HOH A 66 666 16 HOH HOH . D 4 HOH A 67 667 28 HOH HOH . D 4 HOH A 68 668 1 HOH HOH . D 4 HOH A 69 669 41 HOH HOH . D 4 HOH A 70 670 1 HOH HOH . D 4 HOH A 71 671 16 HOH HOH . D 4 HOH A 72 672 28 HOH HOH . D 4 HOH A 73 673 18 HOH HOH . D 4 HOH A 74 674 3 HOH HOH . D 4 HOH A 75 675 29 HOH HOH . D 4 HOH A 76 676 115 HOH HOH . D 4 HOH A 77 677 4 HOH HOH . D 4 HOH A 78 678 25 HOH HOH . D 4 HOH A 79 679 46 HOH HOH . D 4 HOH A 80 680 5 HOH HOH . D 4 HOH A 81 681 19 HOH HOH . D 4 HOH A 82 682 93 HOH HOH . D 4 HOH A 83 683 39 HOH HOH . D 4 HOH A 84 684 78 HOH HOH . D 4 HOH A 85 685 48 HOH HOH . D 4 HOH A 86 686 32 HOH HOH . D 4 HOH A 87 687 27 HOH HOH . D 4 HOH A 88 688 40 HOH HOH . D 4 HOH A 89 689 7 HOH HOH . D 4 HOH A 90 690 13 HOH HOH . D 4 HOH A 91 691 9 HOH HOH . D 4 HOH A 92 692 20 HOH HOH . D 4 HOH A 93 693 16 HOH HOH . D 4 HOH A 94 694 40 HOH HOH . D 4 HOH A 95 695 2 HOH HOH . D 4 HOH A 96 696 1 HOH HOH . D 4 HOH A 97 697 21 HOH HOH . D 4 HOH A 98 698 15 HOH HOH . D 4 HOH A 99 699 5 HOH HOH . D 4 HOH A 100 700 40 HOH HOH . D 4 HOH A 101 701 62 HOH HOH . D 4 HOH A 102 702 12 HOH HOH . D 4 HOH A 103 703 40 HOH HOH . D 4 HOH A 104 704 26 HOH HOH . D 4 HOH A 105 705 95 HOH HOH . D 4 HOH A 106 706 9 HOH HOH . D 4 HOH A 107 707 27 HOH HOH . D 4 HOH A 108 708 23 HOH HOH . D 4 HOH A 109 709 89 HOH HOH . D 4 HOH A 110 710 6 HOH HOH . D 4 HOH A 111 711 56 HOH HOH . D 4 HOH A 112 712 55 HOH HOH . D 4 HOH A 113 713 80 HOH HOH . D 4 HOH A 114 714 3 HOH HOH . D 4 HOH A 115 715 2 HOH HOH . D 4 HOH A 116 716 38 HOH HOH . D 4 HOH A 117 717 16 HOH HOH . D 4 HOH A 118 718 29 HOH HOH . D 4 HOH A 119 719 24 HOH HOH . D 4 HOH A 120 720 32 HOH HOH . D 4 HOH A 121 721 8 HOH HOH . D 4 HOH A 122 722 24 HOH HOH . D 4 HOH A 123 723 1 HOH HOH . D 4 HOH A 124 724 36 HOH HOH . D 4 HOH A 125 725 1 HOH HOH . D 4 HOH A 126 726 57 HOH HOH . D 4 HOH A 127 727 28 HOH HOH . D 4 HOH A 128 728 5 HOH HOH . D 4 HOH A 129 729 2 HOH HOH . D 4 HOH A 130 730 3 HOH HOH . D 4 HOH A 131 731 15 HOH HOH . D 4 HOH A 132 732 80 HOH HOH . D 4 HOH A 133 733 12 HOH HOH . D 4 HOH A 134 734 33 HOH HOH . D 4 HOH A 135 735 2 HOH HOH . D 4 HOH A 136 736 5 HOH HOH . D 4 HOH A 137 737 164 HOH HOH . D 4 HOH A 138 738 4 HOH HOH . D 4 HOH A 139 739 42 HOH HOH . D 4 HOH A 140 740 97 HOH HOH . D 4 HOH A 141 741 162 HOH HOH . D 4 HOH A 142 742 41 HOH HOH . D 4 HOH A 143 743 89 HOH HOH . D 4 HOH A 144 744 32 HOH HOH . D 4 HOH A 145 745 99 HOH HOH . D 4 HOH A 146 746 120 HOH HOH . D 4 HOH A 147 747 13 HOH HOH . D 4 HOH A 148 748 2 HOH HOH . D 4 HOH A 149 749 84 HOH HOH . D 4 HOH A 150 750 109 HOH HOH . D 4 HOH A 151 751 10 HOH HOH . D 4 HOH A 152 752 100 HOH HOH . D 4 HOH A 153 753 53 HOH HOH . D 4 HOH A 154 754 87 HOH HOH . D 4 HOH A 155 755 124 HOH HOH . D 4 HOH A 156 756 2 HOH HOH . D 4 HOH A 157 757 43 HOH HOH . D 4 HOH A 158 758 29 HOH HOH . D 4 HOH A 159 759 121 HOH HOH . D 4 HOH A 160 760 35 HOH HOH . D 4 HOH A 161 761 79 HOH HOH . D 4 HOH A 162 762 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG MGT . . . B 2 -25.37 16.595 0.971 1 69.86 ? PG MGT 501 A 1 HETATM 2 O O1G MGT . . . B 2 -24.792 17.976 1.092 1 76.35 ? O1G MGT 501 A 1 HETATM 3 O O2G MGT . . . B 2 -24.539 15.732 1.914 1 76.03 ? O2G MGT 501 A 1 HETATM 4 O O3G MGT . . . B 2 -26.877 16.636 1.172 1 77.12 ? O3G MGT 501 A 1 HETATM 5 O O3B MGT . . . B 2 -25.305 16.07 -0.617 1 50.23 ? O3B MGT 501 A 1 HETATM 6 P PB MGT . . . B 2 -25.344 14.552 -1.261 1 42.37 ? PB MGT 501 A 1 HETATM 7 O O1B MGT . . . B 2 -24.11 14.169 -2.04 1 41.97 ? O1B MGT 501 A 1 HETATM 8 O O2B MGT . . . B 2 -26.713 14.076 -1.821 1 47.84 ? O2B MGT 501 A 1 HETATM 9 O O3A MGT . . . B 2 -25.125 14.049 0.247 1 37.49 ? O3A MGT 501 A 1 HETATM 10 P PA MGT . . . B 2 -24.212 12.918 0.963 1 35.93 ? PA MGT 501 A 1 HETATM 11 O O1A MGT . . . B 2 -23.27 13.627 1.916 1 32.17 ? O1A MGT 501 A 1 HETATM 12 O O2A MGT . . . B 2 -23.97 11.962 -0.159 1 27.12 ? O2A MGT 501 A 1 HETATM 13 O O5' MGT . . . B 2 -25.379 12.384 2.028 1 21.36 ? O5' MGT 501 A 1 HETATM 14 C C5' MGT . . . B 2 -26.408 11.64 1.411 1 23.63 ? C5' MGT 501 A 1 HETATM 15 C C4' MGT . . . B 2 -27.642 12.232 1.923 1 19.49 ? C4' MGT 501 A 1 HETATM 16 O O4' MGT . . . B 2 -27.615 11.789 3.354 1 15.2 ? O4' MGT 501 A 1 HETATM 17 C C3' MGT . . . B 2 -27.849 13.691 1.903 1 17.02 ? C3' MGT 501 A 1 HETATM 18 O O3' MGT . . . B 2 -29.17 13.937 1.418 1 20.74 ? O3' MGT 501 A 1 HETATM 19 C C2' MGT . . . B 2 -27.923 14.059 3.35 1 16.47 ? C2' MGT 501 A 1 HETATM 20 O O2' MGT . . . B 2 -28.712 15.24 3.672 1 17.63 ? O2' MGT 501 A 1 HETATM 21 C C1' MGT . . . B 2 -28.405 12.771 3.968 1 12.62 ? C1' MGT 501 A 1 HETATM 22 N N9 MGT . . . B 2 -28.122 12.695 5.392 1 9.98 ? N9 MGT 501 A 1 HETATM 23 C C8 MGT . . . B 2 -26.799 12.797 5.917 1 9.55 ? C8 MGT 501 A 1 HETATM 24 N N7 MGT . . . B 2 -27.102 12.731 7.26 1 9.92 ? N7 MGT 501 A 1 HETATM 25 C CM7 MGT . . . B 2 -25.996 12.743 8.273 1 10.48 ? CM7 MGT 501 A 1 HETATM 26 C C5 MGT . . . B 2 -28.436 12.692 7.575 1 8.17 ? C5 MGT 501 A 1 HETATM 27 C C6 MGT . . . B 2 -29.228 12.663 8.719 1 8.59 ? C6 MGT 501 A 1 HETATM 28 O O6 MGT . . . B 2 -28.743 12.666 9.884 1 10.18 ? O6 MGT 501 A 1 HETATM 29 N N1 MGT . . . B 2 -30.521 12.59 8.545 1 7.73 ? N1 MGT 501 A 1 HETATM 30 C C2 MGT . . . B 2 -31.102 12.603 7.296 1 8.37 ? C2 MGT 501 A 1 HETATM 31 N N2 MGT . . . B 2 -32.424 12.556 7.248 1 8.42 ? N2 MGT 501 A 1 HETATM 32 N N3 MGT . . . B 2 -30.434 12.621 6.149 1 9.09 ? N3 MGT 501 A 1 HETATM 33 C C4 MGT . . . B 2 -29.102 12.684 6.309 1 8.41 ? C4 MGT 501 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 33 #