data_5EGA # _model_server_result.job_id '_hIcLyRTCoLhTORYErV_3w' _model_server_result.datetime_utc '2024-11-22 14:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ega # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5EGA # _exptl.entry_id 5EGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 320.254 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,4,5-tris(oxidanyl)-~{N}-[(~{E})-[3,4,5-tris(oxidanyl)phenyl]methylideneamino]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EGA _cell.length_a 73.989 _cell.length_b 73.989 _cell.length_c 128.546 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 41 A HIS 41 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc2 A OE1 GLU 61 A GLU 80 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc3 A OD2 ASP 89 A ASP 108 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 A OD1 ASP 89 A ASP 108 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc5 A OE1 GLU 100 A GLU 119 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 A O ILE 101 A ILE 120 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 B MN MN . A MN 301 1_555 D O10 GK0 . A GK0 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc8 B MN MN . A MN 301 1_555 D O13 GK0 . A GK0 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 C MN MN . A MN 302 1_555 D O07 GK0 . A GK0 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc10 C MN MN . A MN 302 1_555 D O10 GK0 . A GK0 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc11 C MN MN . A MN 302 1_555 E O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc12 C MN MN . A MN 302 1_555 E O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C14 H12 N2 O7' _chem_comp.formula_weight 320.254 _chem_comp.id GK0 _chem_comp.mon_nstd_flag . _chem_comp.name 3,4,5-tris(oxidanyl)-~{N}-[(~{E})-[3,4,5-tris(oxidanyl)phenyl]methylideneamino]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O34 C33 GK0 sing 83 n n O23 C22 GK0 sing 84 n n C33 C22 GK0 doub 85 n y C33 C31 GK0 sing 86 n y C22 C25 GK0 sing 87 n y C31 C30 GK0 doub 88 n y C25 O26 GK0 sing 89 n n C25 C28 GK0 doub 90 n y C30 C28 GK0 sing 91 n y C30 C19 GK0 sing 92 n n N18 N17 GK0 sing 93 n n N18 C19 GK0 doub 94 e n N17 C15 GK0 sing 95 n n C15 O16 GK0 doub 96 n n C15 C03 GK0 sing 97 n n C01 C03 GK0 doub 98 n y C01 C12 GK0 sing 99 n y O13 C12 GK0 sing 100 n n C03 C04 GK0 sing 101 n y C12 C09 GK0 doub 102 n y C04 C06 GK0 doub 103 n y C09 C06 GK0 sing 104 n y C09 O10 GK0 sing 105 n n C06 O07 GK0 sing 106 n n C01 H1 GK0 sing 107 n n C04 H2 GK0 sing 108 n n O07 H3 GK0 sing 109 n n O10 H4 GK0 sing 110 n n O13 H5 GK0 sing 111 n n N17 H6 GK0 sing 112 n n C19 H7 GK0 sing 113 n n O23 H8 GK0 sing 114 n n O26 H9 GK0 sing 115 n n C28 H10 GK0 sing 116 n n C31 H11 GK0 sing 117 n n O34 H12 GK0 sing 118 n n # _atom_sites.entry_id 5EGA _atom_sites.fract_transf_matrix[1][1] 0.013516 _atom_sites.fract_transf_matrix[1][2] 0.007803 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007779 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 301 301 MN MN . C 2 MN A 1 302 302 MN MN . D 3 GK0 A 1 303 1 GK0 GK0 . E 4 HOH A 1 401 1 HOH HOH . E 4 HOH A 2 402 33 HOH HOH . E 4 HOH A 3 403 4 HOH HOH . E 4 HOH A 4 404 13 HOH HOH . E 4 HOH A 5 405 7 HOH HOH . E 4 HOH A 6 406 28 HOH HOH . E 4 HOH A 7 407 3 HOH HOH . E 4 HOH A 8 408 12 HOH HOH . E 4 HOH A 9 409 11 HOH HOH . E 4 HOH A 10 410 5 HOH HOH . E 4 HOH A 11 411 17 HOH HOH . E 4 HOH A 12 412 21 HOH HOH . E 4 HOH A 13 413 19 HOH HOH . E 4 HOH A 14 414 18 HOH HOH . E 4 HOH A 15 415 16 HOH HOH . E 4 HOH A 16 416 10 HOH HOH . E 4 HOH A 17 417 2 HOH HOH . E 4 HOH A 18 418 9 HOH HOH . E 4 HOH A 19 419 31 HOH HOH . E 4 HOH A 20 420 25 HOH HOH . E 4 HOH A 21 421 20 HOH HOH . E 4 HOH A 22 422 24 HOH HOH . E 4 HOH A 23 423 22 HOH HOH . E 4 HOH A 24 424 26 HOH HOH . E 4 HOH A 25 425 30 HOH HOH . E 4 HOH A 26 426 15 HOH HOH . E 4 HOH A 27 427 29 HOH HOH . E 4 HOH A 28 428 27 HOH HOH . E 4 HOH A 29 429 32 HOH HOH . E 4 HOH A 30 430 8 HOH HOH . E 4 HOH A 31 431 6 HOH HOH . E 4 HOH A 32 432 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 GK0 . . . D 3 -26.903 17.297 -5.988 1 61.69 ? C01 GK0 303 A 1 HETATM 2 C C03 GK0 . . . D 3 -28.166 16.871 -5.554 1 69.95 ? C03 GK0 303 A 1 HETATM 3 C C04 GK0 . . . D 3 -28.311 15.933 -4.519 1 63.06 ? C04 GK0 303 A 1 HETATM 4 C C06 GK0 . . . D 3 -27.199 15.395 -3.914 1 58.33 ? C06 GK0 303 A 1 HETATM 5 O O07 GK0 . . . D 3 -27.308 14.454 -2.856 1 54.34 ? O07 GK0 303 A 1 HETATM 6 C C09 GK0 . . . D 3 -25.965 15.824 -4.37 1 52.47 ? C09 GK0 303 A 1 HETATM 7 O O10 GK0 . . . D 3 -24.821 15.377 -3.812 1 53.7 ? O10 GK0 303 A 1 HETATM 8 C C12 GK0 . . . D 3 -25.786 16.744 -5.37 1 57.03 ? C12 GK0 303 A 1 HETATM 9 O O13 GK0 . . . D 3 -24.438 17.053 -5.655 1 45.97 ? O13 GK0 303 A 1 HETATM 10 C C15 GK0 . . . D 3 -29.491 17.391 -6.107 1 82.55 ? C15 GK0 303 A 1 HETATM 11 O O16 GK0 . . . D 3 -29.789 18.566 -5.957 1 88.51 ? O16 GK0 303 A 1 HETATM 12 N N17 GK0 . . . D 3 -30.366 16.425 -6.686 1 91.63 ? N17 GK0 303 A 1 HETATM 13 N N18 GK0 . . . D 3 -31.635 16.687 -7.212 1 100.13 ? N18 GK0 303 A 1 HETATM 14 C C19 GK0 . . . D 3 -32.604 17.347 -6.602 1 107.79 ? C19 GK0 303 A 1 HETATM 15 C C22 GK0 . . . D 3 -36.407 17.576 -8.713 1 121.46 ? C22 GK0 303 A 1 HETATM 16 O O23 GK0 . . . D 3 -37.64 17.643 -9.406 1 119.81 ? O23 GK0 303 A 1 HETATM 17 C C25 GK0 . . . D 3 -36.279 18.135 -7.434 1 123.73 ? C25 GK0 303 A 1 HETATM 18 O O26 GK0 . . . D 3 -37.397 18.767 -6.847 1 128.72 ? O26 GK0 303 A 1 HETATM 19 C C28 GK0 . . . D 3 -35.051 18.072 -6.744 1 120.71 ? C28 GK0 303 A 1 HETATM 20 C C30 GK0 . . . D 3 -33.942 17.458 -7.343 1 115.28 ? C30 GK0 303 A 1 HETATM 21 C C31 GK0 . . . D 3 -34.078 16.887 -8.619 1 116.74 ? C31 GK0 303 A 1 HETATM 22 C C33 GK0 . . . D 3 -35.301 16.957 -9.291 1 119.49 ? C33 GK0 303 A 1 HETATM 23 O O34 GK0 . . . D 3 -35.398 16.395 -10.567 1 115.87 ? O34 GK0 303 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #