data_5EGC # _model_server_result.job_id wObIkdH71JNUhfkoXCywNQ _model_server_result.datetime_utc '2025-03-01 03:19:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5egc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 5EGC # _exptl.entry_id 5EGC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.06 _cell.angle_gamma 90 _cell.entry_id 5EGC _cell.length_a 455.627 _cell.length_b 261.749 _cell.length_c 450.98 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EGC _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 60-meric 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 ? 30-meric 30 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 (1-60) A,B,C,D 2 1 A,B,C,D 3 (1-5) A,B,C,D 4 (1,2,6,10,23,24) A,B,C,D 5 P A,B,C,D 6 (X0)(1-10,21-25,31-35,41-50) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0 -1 0 0.358314 0 -0.933601 0.933601 0 0.358314 -0.45103 450.97972 0.49838 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.976089 0.176919 -0.126295 -0.176919 0.309017 -0.934456 -0.126295 0.934456 0.332928 49.357 364.28941 260.69594 3 'point symmetry operation' ? ? 0.9374 0.109342 -0.330645 -0.109342 -0.809017 -0.577526 -0.330645 0.577526 -0.746417 129.05872 224.51993 681.66791 4 'point symmetry operation' ? ? 0.9374 -0.109342 -0.330645 0.109342 -0.809017 0.577526 -0.330645 -0.577526 -0.746417 128.96008 -226.15177 681.14695 5 'point symmetry operation' ? ? 0.976089 -0.176919 -0.126295 0.176919 0.309017 0.934456 -0.126295 -0.934456 0.332928 49.19741 -364.91272 259.85301 6 'point symmetry operation' ? ? 0.743222 0 0.669045 0 -1 0 0.669045 0 -0.743222 -323.18459 -0.90206 842.0704 7 'point symmetry operation' ? ? 0.640954 0.756683 0.128878 0.176919 -0.309017 0.934456 0.746912 -0.576142 -0.331937 -112.08417 -365.19147 681.33738 8 'point symmetry operation' ? ? 0.47548 0.467656 -0.745129 0.109342 0.809017 0.577526 0.872905 -0.356076 0.333537 228.80091 -225.42199 421.78562 9 'point symmetry operation' ? ? 0.47548 -0.467656 -0.745129 -0.109342 0.809017 -0.577526 0.872905 0.356076 0.333537 228.37906 225.24971 422.10682 10 'point symmetry operation' ? ? 0.640954 -0.756683 0.128878 -0.176919 -0.309017 -0.934456 0.746912 0.576142 -0.331937 -112.76674 364.01066 681.8571 11 'point symmetry operation' ? ? -0.743222 0 -0.669045 0 -1 0 -0.669045 0 0.743222 -0.93058 -0.90206 -0.35715 12 'point symmetry operation' ? ? -0.640954 -0.756683 -0.128878 0.176919 -0.309017 0.934456 -0.746912 0.576142 0.331937 -212.031 -365.19147 160.37586 13 'point symmetry operation' ? ? -0.47548 -0.467656 0.745129 0.109342 0.809017 0.577526 -0.872905 0.356076 -0.333537 -552.91608 -225.42199 419.92763 14 'point symmetry operation' ? ? -0.47548 0.467656 0.745129 -0.109342 0.809017 -0.577526 -0.872905 -0.356076 -0.333537 -552.49422 225.24971 419.60643 15 'point symmetry operation' ? ? -0.640954 0.756683 -0.128878 -0.176919 -0.309017 -0.934456 -0.746912 -0.576142 0.331937 -211.34842 364.01066 159.85615 16 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 -324.11516 0 841.71324 17 'point symmetry operation' ? ? -0.976089 -0.176919 0.126295 -0.176919 0.309017 -0.934456 0.126295 -0.934456 -0.332928 -373.47216 364.28941 581.0173 18 'point symmetry operation' ? ? -0.9374 -0.109342 0.330645 -0.109342 -0.809017 -0.577526 0.330645 -0.577526 0.746417 -453.17388 224.51993 160.04534 19 'point symmetry operation' ? ? -0.9374 0.109342 0.330645 0.109342 -0.809017 0.577526 0.330645 0.577526 0.746417 -453.07525 -226.15177 160.5663 20 'point symmetry operation' ? ? -0.976089 0.176919 0.126295 0.176919 0.309017 0.934456 0.126295 0.934456 -0.332928 -373.31257 -364.91272 581.86024 21 'point symmetry operation' ? ? 0.334522 -0.358314 -0.871611 -0.933601 0 -0.358314 0.128389 0.933601 -0.334522 258.81601 -0.94941 582.87 22 'point symmetry operation' ? ? 0.499996 -0.866024 0.002396 -0.866024 -0.5 -0.001383 0.002396 -0.001383 -0.999996 -82.42843 -140.44014 842.09932 23 'point symmetry operation' ? ? 0.640954 -0.176919 0.746912 -0.756683 -0.309017 0.576142 0.128878 -0.934456 -0.331937 -372.60895 -365.68985 581.01868 24 'point symmetry operation' ? ? 0.562597 0.756683 0.333041 -0.756683 0.309017 0.576142 0.333041 -0.576142 0.74642 -210.70594 -365.4111 160.43265 25 'point symmetry operation' ? ? 0.373211 0.644574 -0.667261 -0.866024 0.5 -0.001383 0.332739 0.578381 0.744823 179.53615 -139.98911 161.57683 26 'point symmetry operation' ? ? -0.334522 0.358314 0.871611 -0.933601 0 -0.358314 -0.128389 -0.933601 0.334522 -582.93117 -0.94941 258.84325 27 'point symmetry operation' ? ? -0.499996 0.866024 -0.002396 -0.866024 -0.5 -0.001383 -0.002396 0.001383 0.999996 -241.68674 -140.44014 -0.38607 28 'point symmetry operation' ? ? -0.640954 0.176919 -0.746912 -0.756683 -0.309017 0.576142 -0.128878 0.934456 0.331937 48.49378 -365.68985 260.69457 29 'point symmetry operation' ? ? -0.562597 -0.756683 -0.333041 -0.756683 0.309017 0.576142 -0.333041 0.576142 -0.74642 -113.40923 -365.4111 681.28059 30 'point symmetry operation' ? ? -0.373211 -0.644574 0.667261 -0.866024 0.5 -0.001383 -0.332739 -0.578381 -0.744823 -503.65131 -139.98911 680.13641 31 'point symmetry operation' ? ? 0.334522 0.358314 -0.871611 0.933601 0 0.358314 0.128389 -0.933601 -0.334522 259.13923 0.04735 582.02783 32 'point symmetry operation' ? ? 0.373211 -0.644574 -0.667261 0.866024 0.5 0.001383 0.332739 -0.578381 0.744823 178.9547 139.53808 161.0551 33 'point symmetry operation' ? ? 0.562597 -0.756683 0.333041 0.756683 0.309017 -0.576142 0.333041 0.576142 0.74642 -211.38851 364.78779 160.95237 34 'point symmetry operation' ? ? 0.640954 0.176919 0.746912 0.756683 -0.309017 -0.576142 0.128878 0.934456 -0.331937 -372.44935 364.50904 581.86161 35 'point symmetry operation' ? ? 0.499996 0.866024 0.002396 0.866024 -0.5 0.001383 0.002396 0.001383 -0.999996 -81.64722 139.08705 842.10056 36 'point symmetry operation' ? ? -0.334522 -0.358314 0.871611 0.933601 0 0.358314 -0.128389 0.933601 0.334522 -583.25439 0.04735 259.68541 37 'point symmetry operation' ? ? -0.373211 0.644574 0.667261 0.866024 0.5 0.001383 -0.332739 0.578381 -0.744823 -503.06986 139.53808 680.65815 38 'point symmetry operation' ? ? -0.562597 0.756683 -0.333041 0.756683 0.309017 -0.576142 -0.333041 -0.576142 -0.74642 -112.72665 364.78779 680.76088 39 'point symmetry operation' ? ? -0.640954 -0.176919 -0.746912 0.756683 -0.309017 -0.576142 -0.128878 -0.934456 0.331937 48.33419 364.50904 259.85163 40 'point symmetry operation' ? ? -0.499996 -0.866024 -0.002396 0.866024 -0.5 0.001383 -0.002396 -0.001383 0.999996 -242.46794 139.08705 -0.38732 41 'point symmetry operation' ? ? 0.334522 -0.933601 0.128389 -0.358314 0 0.933601 -0.871611 -0.358314 -0.334522 -162.30009 -451.43075 420.22972 42 'point symmetry operation' ? ? 0.47548 -0.109342 0.872905 -0.467656 0.809017 0.356076 -0.745129 -0.577526 0.333537 -452.41965 -225.73001 159.47106 43 'point symmetry operation' ? ? 0.373211 0.866024 0.332739 -0.644574 0.5 -0.578381 -0.667261 0.001383 0.744823 -241.2206 138.73168 -0.74099 44 'point symmetry operation' ? ? 0.169048 0.644574 -0.745618 -0.644574 -0.5 -0.578381 -0.745618 0.578381 0.330952 179.42716 138.28065 161.00118 45 'point symmetry operation' ? ? 0.145137 -0.467656 -0.871914 -0.467656 -0.809017 0.356076 -0.871914 0.356076 -0.33612 228.20272 -226.45979 421.17539 46 'point symmetry operation' ? ? 0.334522 0.933601 0.128389 0.358314 0 -0.933601 -0.871611 0.358314 -0.334522 -161.45792 450.52869 420.55294 47 'point symmetry operation' ? ? 0.145137 0.467656 -0.871914 0.467656 -0.809017 -0.356076 -0.871914 -0.356076 -0.33612 228.62457 224.82795 420.85419 48 'point symmetry operation' ? ? 0.169048 -0.644574 -0.745618 0.644574 -0.5 0.578381 -0.745618 -0.578381 0.330952 178.84571 -139.63374 160.47944 49 'point symmetry operation' ? ? 0.373211 -0.866024 0.332739 0.644574 0.5 0.578381 -0.667261 -0.001383 0.744823 -242.0018 -139.18271 -0.74224 50 'point symmetry operation' ? ? 0.47548 0.109342 0.872905 0.467656 0.809017 -0.356076 -0.745129 0.577526 0.333537 -452.32102 225.55773 159.99202 51 'point symmetry operation' ? ? -0.334522 0.933601 -0.128389 -0.358314 0 0.933601 0.871611 0.358314 0.334522 -161.81508 -451.43075 421.48352 52 'point symmetry operation' ? ? -0.47548 0.109342 -0.872905 -0.467656 0.809017 0.356076 0.745129 0.577526 -0.333537 128.30449 -225.73001 682.24218 53 'point symmetry operation' ? ? -0.373211 -0.866024 -0.332739 -0.644574 0.5 -0.578381 0.667261 -0.001383 -0.744823 -82.89457 138.73168 842.45424 54 'point symmetry operation' ? ? -0.169048 -0.644574 0.745618 -0.644574 -0.5 -0.578381 0.745618 -0.578381 -0.330952 -503.54232 138.28065 680.71207 55 'point symmetry operation' ? ? -0.145137 0.467656 0.871914 -0.467656 -0.809017 0.356076 0.871914 -0.356076 0.33612 -552.31788 -226.45979 420.53786 56 'point symmetry operation' ? ? -0.334522 -0.933601 -0.128389 0.358314 0 -0.933601 0.871611 -0.358314 0.334522 -162.65724 450.52869 421.1603 57 'point symmetry operation' ? ? -0.145137 -0.467656 0.871914 0.467656 -0.809017 -0.356076 0.871914 0.356076 0.33612 -552.73973 224.82795 420.85906 58 'point symmetry operation' ? ? -0.169048 0.644574 0.745618 0.644574 -0.5 0.578381 0.745618 0.578381 -0.330952 -502.96088 -139.63374 681.2338 59 'point symmetry operation' ? ? -0.373211 0.866024 -0.332739 0.644574 0.5 0.578381 0.667261 0.001383 -0.744823 -82.11336 -139.18271 842.45548 60 'point symmetry operation' ? ? -0.47548 -0.109342 -0.872905 0.467656 0.809017 -0.356076 0.745129 -0.577526 -0.333537 128.20585 225.55773 681.72122 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EGC _atom_sites.fract_transf_matrix[1][1] 0.002195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000845 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00382 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SIA A 1 801 737 SIA SIA . C 3 MG A 1 802 1 MG MG . D 4 HOH A 1 901 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -75.433 _atom_site.Cartn_y 4.298 _atom_site.Cartn_z 439.598 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.08 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #