data_5EGJ # _model_server_result.job_id UurhVSLWFEfG0DUTMrKICw _model_server_result.datetime_utc '2024-11-28 07:54:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5egj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 5EGJ # _exptl.entry_id 5EGJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EGJ _cell.length_a 127.73 _cell.length_b 127.73 _cell.length_c 55.722 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EGJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -y-1,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -63.865 -110.617425 0 3 'crystal symmetry operation' 3_545 -x+y,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 63.865 -110.617425 0 4 'crystal symmetry operation' 10_444 -y-1,-x-1,-z-1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 -63.865 -110.617425 -27.861 5 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -27.861 6 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 63.865 -110.617425 -27.861 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 5EGJ _atom_sites.fract_transf_matrix[1][1] 0.007829 _atom_sites.fract_transf_matrix[1][2] 0.00452 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017946 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 COA A 1 200 200 COA COA . C 3 HOH A 1 301 5 HOH HOH . C 3 HOH A 2 302 6 HOH HOH . C 3 HOH A 3 303 7 HOH HOH . C 3 HOH A 4 304 3 HOH HOH . C 3 HOH A 5 305 1 HOH HOH . C 3 HOH A 6 306 4 HOH HOH . C 3 HOH A 7 307 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . B 2 0.528 -45.871 -4.03 0.7 53.78 ? N1A COA 200 A 1 HETATM 2 C C2A COA . . . B 2 1.781 -45.453 -3.689 0.7 52.7 ? C2A COA 200 A 1 HETATM 3 N N3A COA . . . B 2 2.186 -45.517 -2.391 0.7 57.99 ? N3A COA 200 A 1 HETATM 4 C C4A COA . . . B 2 1.34 -46 -1.433 0.7 57.82 ? C4A COA 200 A 1 HETATM 5 C C5A COA . . . B 2 0.111 -46.409 -1.764 0.7 57.41 ? C5A COA 200 A 1 HETATM 6 C C6A COA . . . B 2 -0.302 -46.339 -3.105 0.7 56.72 ? C6A COA 200 A 1 HETATM 7 N N6A COA . . . B 2 -1.651 -46.786 -3.496 0.7 55.03 ? N6A COA 200 A 1 HETATM 8 N N7A COA . . . B 2 -0.517 -46.836 -0.635 0.7 56.05 ? N7A COA 200 A 1 HETATM 9 C C8A COA . . . B 2 0.328 -46.691 0.395 0.7 59.74 ? C8A COA 200 A 1 HETATM 10 N N9A COA . . . B 2 1.47 -46.172 -0.097 0.7 60.93 ? N9A COA 200 A 1 HETATM 11 C C1B COA . . . B 2 2.712 -45.809 0.54 0.7 58.93 ? C1B COA 200 A 1 HETATM 12 C C2B COA . . . B 2 2.59 -44.71 1.282 0.7 59.48 ? C2B COA 200 A 1 HETATM 13 O O2B COA . . . B 2 2.721 -43.558 0.49 0.7 55.53 ? O2B COA 200 A 1 HETATM 14 C C3B COA . . . B 2 3.849 -44.805 2.333 0.7 56.43 ? C3B COA 200 A 1 HETATM 15 O O3B COA . . . B 2 5.014 -44.337 1.662 0.7 59.41 ? O3B COA 200 A 1 HETATM 16 P P3B COA . . . B 2 6.194 -43.539 2.492 0.7 51.91 ? P3B COA 200 A 1 HETATM 17 O O7A COA . . . B 2 5.549 -42.507 3.371 0.7 54.05 ? O7A COA 200 A 1 HETATM 18 O O8A COA . . . B 2 7.145 -42.892 1.486 0.7 44.87 ? O8A COA 200 A 1 HETATM 19 O O9A COA . . . B 2 6.964 -44.514 3.339 0.7 46.77 ? O9A COA 200 A 1 HETATM 20 C C4B COA . . . B 2 3.987 -46.13 2.643 0.7 55.98 ? C4B COA 200 A 1 HETATM 21 O O4B COA . . . B 2 3.094 -46.902 1.633 0.7 57.79 ? O4B COA 200 A 1 HETATM 22 C C5B COA . . . B 2 3.519 -46.435 4.067 0.7 59.73 ? C5B COA 200 A 1 HETATM 23 O O5B COA . . . B 2 2.169 -46.847 4.052 0.7 62.48 ? O5B COA 200 A 1 HETATM 24 P P1A COA . . . B 2 1.08 -45.932 4.971 0.7 72.07 ? P1A COA 200 A 1 HETATM 25 O O1A COA . . . B 2 0.418 -44.881 4.086 0.7 61.99 ? O1A COA 200 A 1 HETATM 26 O O2A COA . . . B 2 1.867 -45.266 6.064 0.7 66.64 ? O2A COA 200 A 1 HETATM 27 O O3A COA . . . B 2 -0.069 -46.883 5.628 0.7 73.87 ? O3A COA 200 A 1 HETATM 28 P P2A COA . . . B 2 -0.995 -47.994 4.788 0.7 73.58 ? P2A COA 200 A 1 HETATM 29 O O4A COA . . . B 2 -1.776 -47.304 3.703 0.7 64.69 ? O4A COA 200 A 1 HETATM 30 O O5A COA . . . B 2 -1.949 -48.679 5.729 0.7 68.32 ? O5A COA 200 A 1 HETATM 31 O O6A COA . . . B 2 0.002 -49.121 4.142 0.7 63.54 ? O6A COA 200 A 1 HETATM 32 C CBP COA . . . B 2 -0.114 -50.746 2.427 0.7 56.86 ? CBP COA 200 A 1 HETATM 33 C CCP COA . . . B 2 0.073 -49.254 2.775 0.7 59.53 ? CCP COA 200 A 1 HETATM 34 C CDP COA . . . B 2 0.552 -51.039 1.004 0.7 50.15 ? CDP COA 200 A 1 HETATM 35 C CEP COA . . . B 2 0.608 -51.603 3.531 0.7 56.67 ? CEP COA 200 A 1 HETATM 36 C CAP COA . . . B 2 -1.625 -51.073 2.378 0.7 53.46 ? CAP COA 200 A 1 HETATM 37 O OAP COA . . . B 2 -2.28 -50.164 1.537 0.7 48.86 ? OAP COA 200 A 1 HETATM 38 C C9P COA . . . B 2 -1.84 -52.479 1.823 0.7 50.52 ? C9P COA 200 A 1 HETATM 39 O O9P COA . . . B 2 -1.755 -53.385 2.491 0.7 51.26 ? O9P COA 200 A 1 HETATM 40 N N8P COA . . . B 2 -2.158 -52.641 0.412 0.7 44.63 ? N8P COA 200 A 1 HETATM 41 C C7P COA . . . B 2 -2.338 -53.972 -0.111 0.7 43.43 ? C7P COA 200 A 1 HETATM 42 C C6P COA . . . B 2 -0.944 -54.446 -0.571 0.7 39.83 ? C6P COA 200 A 1 HETATM 43 C C5P COA . . . B 2 -1.11 -55.873 -1.292 0.7 41.67 ? C5P COA 200 A 1 HETATM 44 O O5P COA . . . B 2 -1.448 -56.812 -0.634 0.7 41.34 ? O5P COA 200 A 1 HETATM 45 N N4P COA . . . B 2 -0.841 -55.977 -2.732 0.7 34.45 ? N4P COA 200 A 1 HETATM 46 C C3P COA . . . B 2 -1.022 -57.245 -3.403 0.7 36.37 ? C3P COA 200 A 1 HETATM 47 C C2P COA . . . B 2 -2.55 -57.499 -3.393 0.7 31.4 ? C2P COA 200 A 1 HETATM 48 S S1P COA . . . B 2 -3.018 -58.752 -4.64 0.7 41.56 ? S1P COA 200 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #