data_5EGM # _model_server_result.job_id FPNFvWaZBe6aJGtSl89iNQ _model_server_result.datetime_utc '2024-11-22 05:09:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5egm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5EGM # _exptl.entry_id 5EGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EGM _cell.length_a 99.298 _cell.length_b 99.298 _cell.length_c 94.685 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 42 1_555 A SG CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 109 A CYS 122 1_555 B SG CYS 49 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf3 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? B ? ? B ? ? ? ? ? ? ? 2.048 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf6 B SG CYS 5 B CYS 88 1_555 B SG CYS 16 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 B SG CYS 12 B CYS 95 1_555 B SG CYS 26 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 B SG CYS 28 B CYS 111 1_555 B SG CYS 41 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc1 A OE1 GLU 55 A GLU 70 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A O ASN 57 A ASN 72 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 A O GLU 60 A GLU 75 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 A OE1 GLU 62 A GLU 77 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc5 A OE2 GLU 65 A GLU 80 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 C NA NA . A NA 301 1_555 F O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EGM _atom_sites.fract_transf_matrix[1][1] 0.010071 _atom_sites.fract_transf_matrix[1][2] 0.005814 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010561 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NA A 1 301 300 NA NA . D 4 NHE A 1 302 301 NHE NHE . E 5 5NY A 1 303 299 5NY UNL . F 6 HOH A 1 401 505 HOH HOH . F 6 HOH A 2 402 452 HOH HOH . F 6 HOH A 3 403 563 HOH HOH . F 6 HOH A 4 404 458 HOH HOH . F 6 HOH A 5 405 497 HOH HOH . F 6 HOH A 6 406 444 HOH HOH . F 6 HOH A 7 407 509 HOH HOH . F 6 HOH A 8 408 565 HOH HOH . F 6 HOH A 9 409 483 HOH HOH . F 6 HOH A 10 410 495 HOH HOH . F 6 HOH A 11 411 493 HOH HOH . F 6 HOH A 12 412 496 HOH HOH . F 6 HOH A 13 413 508 HOH HOH . F 6 HOH A 14 414 479 HOH HOH . F 6 HOH A 15 415 527 HOH HOH . F 6 HOH A 16 416 425 HOH HOH . F 6 HOH A 17 417 464 HOH HOH . F 6 HOH A 18 418 416 HOH HOH . F 6 HOH A 19 419 462 HOH HOH . F 6 HOH A 20 420 406 HOH HOH . F 6 HOH A 21 421 528 HOH HOH . F 6 HOH A 22 422 431 HOH HOH . F 6 HOH A 23 423 416 HOH HOH . F 6 HOH A 24 424 429 HOH HOH . F 6 HOH A 25 425 514 HOH HOH . F 6 HOH A 26 426 451 HOH HOH . F 6 HOH A 27 427 475 HOH HOH . F 6 HOH A 28 428 515 HOH HOH . F 6 HOH A 29 429 406 HOH HOH . F 6 HOH A 30 430 432 HOH HOH . F 6 HOH A 31 431 407 HOH HOH . F 6 HOH A 32 432 403 HOH HOH . F 6 HOH A 33 433 455 HOH HOH . F 6 HOH A 34 434 482 HOH HOH . F 6 HOH A 35 435 446 HOH HOH . F 6 HOH A 36 436 454 HOH HOH . F 6 HOH A 37 437 488 HOH HOH . F 6 HOH A 38 438 424 HOH HOH . F 6 HOH A 39 439 461 HOH HOH . F 6 HOH A 40 440 531 HOH HOH . F 6 HOH A 41 441 529 HOH HOH . F 6 HOH A 42 442 433 HOH HOH . F 6 HOH A 43 443 492 HOH HOH . F 6 HOH A 44 444 512 HOH HOH . F 6 HOH A 45 445 491 HOH HOH . F 6 HOH A 46 446 469 HOH HOH . F 6 HOH A 47 447 435 HOH HOH . F 6 HOH A 48 448 554 HOH HOH . F 6 HOH A 49 449 467 HOH HOH . F 6 HOH A 50 450 408 HOH HOH . F 6 HOH A 51 451 417 HOH HOH . F 6 HOH A 52 452 448 HOH HOH . F 6 HOH A 53 453 465 HOH HOH . F 6 HOH A 54 454 526 HOH HOH . F 6 HOH A 55 455 521 HOH HOH . F 6 HOH A 56 456 534 HOH HOH . F 6 HOH A 57 457 415 HOH HOH . F 6 HOH A 58 458 533 HOH HOH . F 6 HOH A 59 459 465 HOH HOH . F 6 HOH A 60 460 530 HOH HOH . F 6 HOH A 61 461 426 HOH HOH . F 6 HOH A 62 462 442 HOH HOH . F 6 HOH A 63 463 409 HOH HOH . F 6 HOH A 64 464 561 HOH HOH . F 6 HOH A 65 465 545 HOH HOH . F 6 HOH A 66 466 470 HOH HOH . F 6 HOH A 67 467 430 HOH HOH . F 6 HOH A 68 468 471 HOH HOH . F 6 HOH A 69 469 484 HOH HOH . F 6 HOH A 70 470 517 HOH HOH . F 6 HOH A 71 471 411 HOH HOH . F 6 HOH A 72 472 501 HOH HOH . F 6 HOH A 73 473 410 HOH HOH . F 6 HOH A 74 474 541 HOH HOH . F 6 HOH A 75 475 402 HOH HOH . F 6 HOH A 76 476 438 HOH HOH . F 6 HOH A 77 477 486 HOH HOH . F 6 HOH A 78 478 511 HOH HOH . F 6 HOH A 79 479 404 HOH HOH . F 6 HOH A 80 480 490 HOH HOH . F 6 HOH A 81 481 559 HOH HOH . F 6 HOH A 82 482 485 HOH HOH . F 6 HOH A 83 483 447 HOH HOH . F 6 HOH A 84 484 422 HOH HOH . F 6 HOH A 85 485 494 HOH HOH . F 6 HOH A 86 486 434 HOH HOH . F 6 HOH A 87 487 560 HOH HOH . F 6 HOH A 88 488 450 HOH HOH . F 6 HOH A 89 489 436 HOH HOH . F 6 HOH A 90 490 405 HOH HOH . F 6 HOH A 91 491 472 HOH HOH . F 6 HOH A 92 492 401 HOH HOH . F 6 HOH A 93 493 421 HOH HOH . F 6 HOH A 94 494 419 HOH HOH . F 6 HOH A 95 495 532 HOH HOH . F 6 HOH A 96 496 480 HOH HOH . F 6 HOH A 97 497 460 HOH HOH . F 6 HOH A 98 498 544 HOH HOH . F 6 HOH A 99 499 555 HOH HOH . F 6 HOH A 100 500 445 HOH HOH . F 6 HOH A 101 501 412 HOH HOH . F 6 HOH A 102 502 522 HOH HOH . F 6 HOH A 103 503 449 HOH HOH . F 6 HOH A 104 504 423 HOH HOH . F 6 HOH A 105 505 420 HOH HOH . F 6 HOH A 106 506 440 HOH HOH . F 6 HOH A 107 507 519 HOH HOH . F 6 HOH A 108 508 502 HOH HOH . F 6 HOH A 109 509 418 HOH HOH . F 6 HOH A 110 510 525 HOH HOH . F 6 HOH A 111 511 510 HOH HOH . F 6 HOH A 112 512 481 HOH HOH . F 6 HOH A 113 513 524 HOH HOH . F 6 HOH A 114 514 518 HOH HOH . F 6 HOH A 115 515 558 HOH HOH . F 6 HOH A 116 516 427 HOH HOH . F 6 HOH A 117 517 476 HOH HOH . F 6 HOH A 118 518 438 HOH HOH . F 6 HOH A 119 519 443 HOH HOH . F 6 HOH A 120 520 553 HOH HOH . F 6 HOH A 121 521 428 HOH HOH . F 6 HOH A 122 522 540 HOH HOH . F 6 HOH A 123 523 407 HOH HOH . F 6 HOH A 124 524 516 HOH HOH . F 6 HOH A 125 525 506 HOH HOH . F 6 HOH A 126 526 504 HOH HOH . F 6 HOH A 127 527 468 HOH HOH . F 6 HOH A 128 528 457 HOH HOH . F 6 HOH A 129 529 441 HOH HOH . F 6 HOH A 130 530 520 HOH HOH . F 6 HOH A 131 531 464 HOH HOH . F 6 HOH A 132 532 439 HOH HOH . F 6 HOH A 133 533 413 HOH HOH . F 6 HOH A 134 534 474 HOH HOH . F 6 HOH A 135 535 473 HOH HOH . F 6 HOH A 136 536 443 HOH HOH . F 6 HOH A 137 537 513 HOH HOH . F 6 HOH A 138 538 453 HOH HOH . F 6 HOH A 139 539 523 HOH HOH . F 6 HOH A 140 540 562 HOH HOH . F 6 HOH A 141 541 539 HOH HOH . F 6 HOH A 142 542 548 HOH HOH . F 6 HOH A 143 543 557 HOH HOH . F 6 HOH A 144 544 556 HOH HOH . F 6 HOH A 145 545 499 HOH HOH . F 6 HOH A 146 546 503 HOH HOH . F 6 HOH A 147 547 550 HOH HOH . F 6 HOH A 148 548 463 HOH HOH . F 6 HOH A 149 549 536 HOH HOH . F 6 HOH A 150 550 507 HOH HOH . F 6 HOH A 151 551 564 HOH HOH . F 6 HOH A 152 552 489 HOH HOH . F 6 HOH A 153 553 498 HOH HOH . F 6 HOH A 154 554 457 HOH HOH . F 6 HOH A 155 555 543 HOH HOH . F 6 HOH A 156 556 437 HOH HOH . F 6 HOH A 157 557 456 HOH HOH . F 6 HOH A 158 558 538 HOH HOH . F 6 HOH A 159 559 546 HOH HOH . F 6 HOH A 160 560 487 HOH HOH . F 6 HOH A 161 561 449 HOH HOH . F 6 HOH A 162 562 466 HOH HOH . F 6 HOH A 163 563 535 HOH HOH . F 6 HOH A 164 564 459 HOH HOH . G 6 HOH B 1 201 419 HOH HOH . G 6 HOH B 2 202 414 HOH HOH . G 6 HOH B 3 203 402 HOH HOH . G 6 HOH B 4 204 428 HOH HOH . G 6 HOH B 5 205 405 HOH HOH . G 6 HOH B 6 206 409 HOH HOH . G 6 HOH B 7 207 431 HOH HOH . G 6 HOH B 8 208 463 HOH HOH . G 6 HOH B 9 209 462 HOH HOH . G 6 HOH B 10 210 403 HOH HOH . G 6 HOH B 11 211 446 HOH HOH . G 6 HOH B 12 212 452 HOH HOH . G 6 HOH B 13 213 427 HOH HOH . G 6 HOH B 14 214 412 HOH HOH . G 6 HOH B 15 215 456 HOH HOH . G 6 HOH B 16 216 408 HOH HOH . G 6 HOH B 17 217 450 HOH HOH . G 6 HOH B 18 218 410 HOH HOH . G 6 HOH B 19 219 440 HOH HOH . G 6 HOH B 20 220 436 HOH HOH . G 6 HOH B 21 221 421 HOH HOH . G 6 HOH B 22 222 437 HOH HOH . G 6 HOH B 23 223 432 HOH HOH . G 6 HOH B 24 224 411 HOH HOH . G 6 HOH B 25 225 434 HOH HOH . G 6 HOH B 26 226 401 HOH HOH . G 6 HOH B 27 227 441 HOH HOH . G 6 HOH B 28 228 433 HOH HOH . G 6 HOH B 29 229 435 HOH HOH . G 6 HOH B 30 230 422 HOH HOH . G 6 HOH B 31 231 477 HOH HOH . G 6 HOH B 32 232 424 HOH HOH . G 6 HOH B 33 233 415 HOH HOH . G 6 HOH B 34 234 460 HOH HOH . G 6 HOH B 35 235 417 HOH HOH . G 6 HOH B 36 236 453 HOH HOH . G 6 HOH B 37 237 442 HOH HOH . G 6 HOH B 38 238 414 HOH HOH . G 6 HOH B 39 239 439 HOH HOH . G 6 HOH B 40 240 425 HOH HOH . G 6 HOH B 41 241 420 HOH HOH . G 6 HOH B 42 242 418 HOH HOH . G 6 HOH B 43 243 423 HOH HOH . G 6 HOH B 44 244 430 HOH HOH . G 6 HOH B 45 245 404 HOH HOH . G 6 HOH B 46 246 455 HOH HOH . G 6 HOH B 47 247 451 HOH HOH . G 6 HOH B 48 248 454 HOH HOH . G 6 HOH B 49 249 445 HOH HOH . G 6 HOH B 50 250 444 HOH HOH . G 6 HOH B 51 251 478 HOH HOH . G 6 HOH B 52 252 448 HOH HOH . G 6 HOH B 53 253 426 HOH HOH . G 6 HOH B 54 254 429 HOH HOH . G 6 HOH B 55 255 447 HOH HOH . G 6 HOH B 56 256 413 HOH HOH . G 6 HOH B 57 257 459 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 4.58 _atom_site.Cartn_y -19.739 _atom_site.Cartn_z -13.393 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.9 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #