data_5EH4 # _model_server_result.job_id EZEvhXM6ZKWQZjbl1MEJxw _model_server_result.datetime_utc '2024-11-04 22:38:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eh4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 5EH4 # _exptl.entry_id 5EH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EH4 _cell.length_a 43.195 _cell.length_b 43.195 _cell.length_c 129.419 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 151 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 1 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E 1 1 C,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 29 A LEU 98 1_555 A N SCH 30 A SCH 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C LEU 29 B LEU 98 1_555 B N SCH 30 B SCH 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C LEU 29 C LEU 98 1_555 C N SCH 30 C SCH 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 D C LEU 29 D LEU 98 1_555 D N SCH 30 D SCH 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLB _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O19 OLB doub 127 n n C1 O20 OLB sing 128 n n C2 C1 OLB sing 129 n n C3 C2 OLB sing 130 n n C4 C3 OLB sing 131 n n C5 C4 OLB sing 132 n n C5 C6 OLB sing 133 n n O20 C21 OLB sing 134 n n C21 C22 OLB sing 135 n n C22 C24 OLB sing 136 n n O23 C22 OLB sing 137 n n C24 O25 OLB sing 138 n n C6 C7 OLB sing 139 n n C7 C8 OLB sing 140 n n C8 C9 OLB sing 141 n n C9 C10 OLB doub 142 z n C10 C11 OLB sing 143 n n C2 H2 OLB sing 144 n n C2 H2A OLB sing 145 n n C3 H3 OLB sing 146 n n C3 H3A OLB sing 147 n n C4 H4 OLB sing 148 n n C4 H4A OLB sing 149 n n C5 H5 OLB sing 150 n n C5 H5A OLB sing 151 n n C21 H21 OLB sing 152 n n C21 H21A OLB sing 153 n n C22 H22 OLB sing 154 n n O23 HO23 OLB sing 155 n n C24 H24 OLB sing 156 n n C24 H24A OLB sing 157 n n O25 HO25 OLB sing 158 n n C6 H16 OLB sing 159 n n C6 H17 OLB sing 160 n n C7 H18 OLB sing 161 n n C7 H19 OLB sing 162 n n C8 H20 OLB sing 163 n n C8 H211 OLB sing 164 n n C9 H221 OLB sing 165 n n C10 H23 OLB sing 166 n n C11 H241 OLB sing 167 n n C11 H25 OLB sing 168 n n C11 C12 OLB sing 169 n n C12 H26 OLB sing 170 n n C12 C13 OLB sing 171 n n C12 H27 OLB sing 172 n n C13 C14 OLB sing 173 n n C13 H28 OLB sing 174 n n C13 H29 OLB sing 175 n n C14 H30 OLB sing 176 n n C14 H31 OLB sing 177 n n C14 C15 OLB sing 178 n n C15 C16 OLB sing 179 n n C15 H32 OLB sing 180 n n C15 H33 OLB sing 181 n n C16 H34 OLB sing 182 n n C16 H35 OLB sing 183 n n C16 C17 OLB sing 184 n n C17 C18 OLB sing 185 n n C17 H36 OLB sing 186 n n C17 H37 OLB sing 187 n n C18 H38 OLB sing 188 n n C18 H39 OLB sing 189 n n C18 H40 OLB sing 190 n n # _atom_sites.entry_id 5EH4 _atom_sites.fract_transf_matrix[1][1] 0.023151 _atom_sites.fract_transf_matrix[1][2] 0.013366 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007727 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id OLB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id OLB _pdbx_nonpoly_scheme.auth_mon_id MPG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLB . . . E 2 24.188 8.069 30.708 1 50.8 ? C1 OLB 101 A 1 HETATM 2 C C2 OLB . . . E 2 25.573 8.23 30.12 1 42.85 ? C2 OLB 101 A 1 HETATM 3 C C3 OLB . . . E 2 25.751 9.58 29.462 1 40.8 ? C3 OLB 101 A 1 HETATM 4 C C4 OLB . . . E 2 26.627 9.53 28.228 1 33.5 ? C4 OLB 101 A 1 HETATM 5 C C5 OLB . . . E 2 27.653 10.643 28.217 1 25.3 ? C5 OLB 101 A 1 HETATM 6 O O19 OLB . . . E 2 23.243 7.848 29.977 1 59.78 ? O19 OLB 101 A 1 HETATM 7 O O20 OLB . . . E 2 23.988 8.184 32.094 1 48.25 ? O20 OLB 101 A 1 HETATM 8 C C21 OLB . . . E 2 23.03 9.155 32.447 1 51.24 ? C21 OLB 101 A 1 HETATM 9 C C22 OLB . . . E 2 22.916 9.196 33.955 1 58.61 ? C22 OLB 101 A 1 HETATM 10 O O23 OLB . . . E 2 23.086 10.533 34.37 1 63.35 ? O23 OLB 101 A 1 HETATM 11 C C24 OLB . . . E 2 21.566 8.719 34.445 1 50.95 ? C24 OLB 101 A 1 HETATM 12 O O25 OLB . . . E 2 21.536 8.816 35.852 1 39.35 ? O25 OLB 101 A 1 HETATM 13 C C6 OLB . . . E 2 28.216 10.917 26.839 1 23.28 ? C6 OLB 101 A 1 HETATM 14 C C7 OLB . . . E 2 29.554 11.621 26.902 1 17.41 ? C7 OLB 101 A 1 HETATM 15 C C8 OLB . . . E 2 29.999 12.165 25.561 1 16.37 ? C8 OLB 101 A 1 HETATM 16 C C9 OLB . . . E 2 31.224 13.041 25.705 1 15.77 ? C9 OLB 101 A 1 HETATM 17 C C10 OLB . . . E 2 31.767 13.684 24.651 1 9.66 ? C10 OLB 101 A 1 HETATM 18 C C11 OLB . . . E 2 31.178 13.569 23.264 1 10.01 ? C11 OLB 101 A 1 HETATM 19 C C12 OLB . . . E 2 32.025 14.309 22.253 1 9.88 ? C12 OLB 101 A 1 HETATM 20 C C13 OLB . . . E 2 31.467 14.249 20.848 1 7.07 ? C13 OLB 101 A 1 HETATM 21 C C14 OLB . . . E 2 32.297 15.069 19.885 1 9.27 ? C14 OLB 101 A 1 HETATM 22 C C15 OLB . . . E 2 31.556 15.388 18.606 1 10.03 ? C15 OLB 101 A 1 HETATM 23 C C16 OLB . . . E 2 32.228 16.493 17.82 1 8.47 ? C16 OLB 101 A 1 HETATM 24 C C17 OLB . . . E 2 31.474 16.838 16.554 1 13.22 ? C17 OLB 101 A 1 HETATM 25 C C18 OLB . . . E 2 32.296 17.678 15.602 1 17.17 ? C18 OLB 101 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #