data_5EHE # _model_server_result.job_id 6WN1wiO2BKpxd8xkNF-dVQ _model_server_result.datetime_utc '2024-11-29 02:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ehe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5EHE # _exptl.entry_id 5EHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment Zn _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104 _cell.angle_gamma 90 _cell.entry_id 5EHE _cell.length_a 42.2 _cell.length_b 41.026 _cell.length_c 71.95 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 G N10 WWO . A WWO 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5EHE _atom_sites.fract_transf_matrix[1][1] 0.023697 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005908 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024375 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014324 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN ZN . C 3 DMS A 1 302 1 DMS DMS . D 4 MES A 1 303 3 MES MES . E 5 PEG A 1 304 5 PEG PEG . F 3 DMS A 1 305 7 DMS DMS . G 6 WWO A 1 306 1 WWO WWO . H 7 HOH A 1 401 203 HOH HOH . H 7 HOH A 2 402 185 HOH HOH . H 7 HOH A 3 403 115 HOH HOH . H 7 HOH A 4 404 17 HOH HOH . H 7 HOH A 5 405 196 HOH HOH . H 7 HOH A 6 406 210 HOH HOH . H 7 HOH A 7 407 192 HOH HOH . H 7 HOH A 8 408 172 HOH HOH . H 7 HOH A 9 409 199 HOH HOH . H 7 HOH A 10 410 62 HOH HOH . H 7 HOH A 11 411 119 HOH HOH . H 7 HOH A 12 412 67 HOH HOH . H 7 HOH A 13 413 126 HOH HOH . H 7 HOH A 14 414 86 HOH HOH . H 7 HOH A 15 415 54 HOH HOH . H 7 HOH A 16 416 179 HOH HOH . H 7 HOH A 17 417 55 HOH HOH . H 7 HOH A 18 418 56 HOH HOH . H 7 HOH A 19 419 215 HOH HOH . H 7 HOH A 20 420 131 HOH HOH . H 7 HOH A 21 421 18 HOH HOH . H 7 HOH A 22 422 52 HOH HOH . H 7 HOH A 23 423 134 HOH HOH . H 7 HOH A 24 424 75 HOH HOH . H 7 HOH A 25 425 5 HOH HOH . H 7 HOH A 26 426 177 HOH HOH . H 7 HOH A 27 427 111 HOH HOH . H 7 HOH A 28 428 116 HOH HOH . H 7 HOH A 29 429 46 HOH HOH . H 7 HOH A 30 430 43 HOH HOH . H 7 HOH A 31 431 200 HOH HOH . H 7 HOH A 32 432 205 HOH HOH . H 7 HOH A 33 433 31 HOH HOH . H 7 HOH A 34 434 107 HOH HOH . H 7 HOH A 35 435 159 HOH HOH . H 7 HOH A 36 436 202 HOH HOH . H 7 HOH A 37 437 79 HOH HOH . H 7 HOH A 38 438 22 HOH HOH . H 7 HOH A 39 439 105 HOH HOH . H 7 HOH A 40 440 122 HOH HOH . H 7 HOH A 41 441 38 HOH HOH . H 7 HOH A 42 442 11 HOH HOH . H 7 HOH A 43 443 81 HOH HOH . H 7 HOH A 44 444 114 HOH HOH . H 7 HOH A 45 445 133 HOH HOH . H 7 HOH A 46 446 149 HOH HOH . H 7 HOH A 47 447 3 HOH HOH . H 7 HOH A 48 448 44 HOH HOH . H 7 HOH A 49 449 165 HOH HOH . H 7 HOH A 50 450 175 HOH HOH . H 7 HOH A 51 451 64 HOH HOH . H 7 HOH A 52 452 50 HOH HOH . H 7 HOH A 53 453 206 HOH HOH . H 7 HOH A 54 454 6 HOH HOH . H 7 HOH A 55 455 84 HOH HOH . H 7 HOH A 56 456 181 HOH HOH . H 7 HOH A 57 457 24 HOH HOH . H 7 HOH A 58 458 4 HOH HOH . H 7 HOH A 59 459 167 HOH HOH . H 7 HOH A 60 460 110 HOH HOH . H 7 HOH A 61 461 176 HOH HOH . H 7 HOH A 62 462 201 HOH HOH . H 7 HOH A 63 463 88 HOH HOH . H 7 HOH A 64 464 40 HOH HOH . H 7 HOH A 65 465 108 HOH HOH . H 7 HOH A 66 466 71 HOH HOH . H 7 HOH A 67 467 15 HOH HOH . H 7 HOH A 68 468 63 HOH HOH . H 7 HOH A 69 469 32 HOH HOH . H 7 HOH A 70 470 1 HOH HOH . H 7 HOH A 71 471 9 HOH HOH . H 7 HOH A 72 472 12 HOH HOH . H 7 HOH A 73 473 28 HOH HOH . H 7 HOH A 74 474 118 HOH HOH . H 7 HOH A 75 475 162 HOH HOH . H 7 HOH A 76 476 2 HOH HOH . H 7 HOH A 77 477 45 HOH HOH . H 7 HOH A 78 478 42 HOH HOH . H 7 HOH A 79 479 189 HOH HOH . H 7 HOH A 80 480 74 HOH HOH . H 7 HOH A 81 481 94 HOH HOH . H 7 HOH A 82 482 29 HOH HOH . H 7 HOH A 83 483 7 HOH HOH . H 7 HOH A 84 484 204 HOH HOH . H 7 HOH A 85 485 187 HOH HOH . H 7 HOH A 86 486 26 HOH HOH . H 7 HOH A 87 487 80 HOH HOH . H 7 HOH A 88 488 30 HOH HOH . H 7 HOH A 89 489 10 HOH HOH . H 7 HOH A 90 490 207 HOH HOH . H 7 HOH A 91 491 13 HOH HOH . H 7 HOH A 92 492 70 HOH HOH . H 7 HOH A 93 493 8 HOH HOH . H 7 HOH A 94 494 19 HOH HOH . H 7 HOH A 95 495 96 HOH HOH . H 7 HOH A 96 496 76 HOH HOH . H 7 HOH A 97 497 69 HOH HOH . H 7 HOH A 98 498 35 HOH HOH . H 7 HOH A 99 499 37 HOH HOH . H 7 HOH A 100 500 23 HOH HOH . H 7 HOH A 101 501 112 HOH HOH . H 7 HOH A 102 502 113 HOH HOH . H 7 HOH A 103 503 39 HOH HOH . H 7 HOH A 104 504 197 HOH HOH . H 7 HOH A 105 505 123 HOH HOH . H 7 HOH A 106 506 73 HOH HOH . H 7 HOH A 107 507 145 HOH HOH . H 7 HOH A 108 508 160 HOH HOH . H 7 HOH A 109 509 14 HOH HOH . H 7 HOH A 110 510 169 HOH HOH . H 7 HOH A 111 511 147 HOH HOH . H 7 HOH A 112 512 25 HOH HOH . H 7 HOH A 113 513 21 HOH HOH . H 7 HOH A 114 514 144 HOH HOH . H 7 HOH A 115 515 60 HOH HOH . H 7 HOH A 116 516 82 HOH HOH . H 7 HOH A 117 517 190 HOH HOH . H 7 HOH A 118 518 143 HOH HOH . H 7 HOH A 119 519 66 HOH HOH . H 7 HOH A 120 520 157 HOH HOH . H 7 HOH A 121 521 59 HOH HOH . H 7 HOH A 122 522 98 HOH HOH . H 7 HOH A 123 523 158 HOH HOH . H 7 HOH A 124 524 87 HOH HOH . H 7 HOH A 125 525 125 HOH HOH . H 7 HOH A 126 526 77 HOH HOH . H 7 HOH A 127 527 65 HOH HOH . H 7 HOH A 128 528 16 HOH HOH . H 7 HOH A 129 529 120 HOH HOH . H 7 HOH A 130 530 117 HOH HOH . H 7 HOH A 131 531 188 HOH HOH . H 7 HOH A 132 532 47 HOH HOH . H 7 HOH A 133 533 164 HOH HOH . H 7 HOH A 134 534 72 HOH HOH . H 7 HOH A 135 535 130 HOH HOH . H 7 HOH A 136 536 83 HOH HOH . H 7 HOH A 137 537 92 HOH HOH . H 7 HOH A 138 538 61 HOH HOH . H 7 HOH A 139 539 156 HOH HOH . H 7 HOH A 140 540 20 HOH HOH . H 7 HOH A 141 541 184 HOH HOH . H 7 HOH A 142 542 139 HOH HOH . H 7 HOH A 143 543 180 HOH HOH . H 7 HOH A 144 544 89 HOH HOH . H 7 HOH A 145 545 101 HOH HOH . H 7 HOH A 146 546 99 HOH HOH . H 7 HOH A 147 547 36 HOH HOH . H 7 HOH A 148 548 51 HOH HOH . H 7 HOH A 149 549 49 HOH HOH . H 7 HOH A 150 550 85 HOH HOH . H 7 HOH A 151 551 33 HOH HOH . H 7 HOH A 152 552 34 HOH HOH . H 7 HOH A 153 553 104 HOH HOH . H 7 HOH A 154 554 100 HOH HOH . H 7 HOH A 155 555 132 HOH HOH . H 7 HOH A 156 556 27 HOH HOH . H 7 HOH A 157 557 217 HOH HOH . H 7 HOH A 158 558 103 HOH HOH . H 7 HOH A 159 559 191 HOH HOH . H 7 HOH A 160 560 213 HOH HOH . H 7 HOH A 161 561 41 HOH HOH . H 7 HOH A 162 562 91 HOH HOH . H 7 HOH A 163 563 102 HOH HOH . H 7 HOH A 164 564 138 HOH HOH . H 7 HOH A 165 565 141 HOH HOH . H 7 HOH A 166 566 78 HOH HOH . H 7 HOH A 167 567 57 HOH HOH . H 7 HOH A 168 568 109 HOH HOH . H 7 HOH A 169 569 186 HOH HOH . H 7 HOH A 170 570 208 HOH HOH . H 7 HOH A 171 571 58 HOH HOH . H 7 HOH A 172 572 90 HOH HOH . H 7 HOH A 173 573 170 HOH HOH . H 7 HOH A 174 574 195 HOH HOH . H 7 HOH A 175 575 150 HOH HOH . H 7 HOH A 176 576 166 HOH HOH . H 7 HOH A 177 577 53 HOH HOH . H 7 HOH A 178 578 140 HOH HOH . H 7 HOH A 179 579 168 HOH HOH . H 7 HOH A 180 580 214 HOH HOH . H 7 HOH A 181 581 146 HOH HOH . H 7 HOH A 182 582 163 HOH HOH . H 7 HOH A 183 583 124 HOH HOH . H 7 HOH A 184 584 152 HOH HOH . H 7 HOH A 185 585 161 HOH HOH . H 7 HOH A 186 586 212 HOH HOH . H 7 HOH A 187 587 216 HOH HOH . H 7 HOH A 188 588 171 HOH HOH . H 7 HOH A 189 589 183 HOH HOH . H 7 HOH A 190 590 136 HOH HOH . H 7 HOH A 191 591 218 HOH HOH . H 7 HOH A 192 592 209 HOH HOH . H 7 HOH A 193 593 154 HOH HOH . H 7 HOH A 194 594 68 HOH HOH . H 7 HOH A 195 595 93 HOH HOH . H 7 HOH A 196 596 97 HOH HOH . H 7 HOH A 197 597 106 HOH HOH . H 7 HOH A 198 598 198 HOH HOH . H 7 HOH A 199 599 155 HOH HOH . H 7 HOH A 200 600 194 HOH HOH . H 7 HOH A 201 601 151 HOH HOH . H 7 HOH A 202 602 178 HOH HOH . H 7 HOH A 203 603 142 HOH HOH . H 7 HOH A 204 604 127 HOH HOH . H 7 HOH A 205 605 211 HOH HOH . H 7 HOH A 206 606 137 HOH HOH . H 7 HOH A 207 607 182 HOH HOH . H 7 HOH A 208 608 121 HOH HOH . H 7 HOH A 209 609 193 HOH HOH . H 7 HOH A 210 610 129 HOH HOH . H 7 HOH A 211 611 148 HOH HOH . H 7 HOH A 212 612 128 HOH HOH . H 7 HOH A 213 613 48 HOH HOH . H 7 HOH A 214 614 135 HOH HOH . H 7 HOH A 215 615 153 HOH HOH . H 7 HOH A 216 616 174 HOH HOH . H 7 HOH A 217 617 173 HOH HOH . H 7 HOH A 218 618 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 22.614 -9.794 15.014 1 30.95 ? S DMS 302 A 1 HETATM 2 O O DMS . . . C 3 23.421 -8.734 14.256 1 38.08 ? O DMS 302 A 1 HETATM 3 C C1 DMS . . . C 3 23.24 -11.338 14.544 1 27.76 ? C1 DMS 302 A 1 HETATM 4 C C2 DMS . . . C 3 23.069 -9.77 16.658 1 25.74 ? C2 DMS 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #