data_5EHJ # _model_server_result.job_id nJmJZ71SKG1syJVkevZC7w _model_server_result.datetime_utc '2025-07-18 01:23:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ehj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":901}' # _entry.id 5EHJ # _exptl.entry_id 5EHJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 334.451 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4,4'-[(4aR,8aR)-octahydronaphthalen-2(1H)-ylidenemethanediyl]diphenol" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.45 _cell.angle_gamma 90 _cell.entry_id 5EHJ _cell.length_a 55 _cell.length_b 81.99 _cell.length_c 58.32 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EHJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C23 H26 O2' _chem_comp.formula_weight 334.451 _chem_comp.id 5K5 _chem_comp.mon_nstd_flag . _chem_comp.name "4,4'-[(4aR,8aR)-octahydronaphthalen-2(1H)-ylidenemethanediyl]diphenol" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O02 C21 5K5 sing 1 n n C22 C21 5K5 doub 2 n y C22 C23 5K5 sing 3 n y C21 C20 5K5 sing 4 n y C23 C18 5K5 doub 5 n y C20 C19 5K5 doub 6 n y C18 C19 5K5 sing 7 n y C18 C11 5K5 sing 8 n n C13 C14 5K5 doub 9 n y C13 C12 5K5 sing 10 n y C14 C15 5K5 sing 11 n y C11 C12 5K5 sing 12 n n C11 C10 5K5 doub 13 n n C12 C17 5K5 doub 14 n y C15 O01 5K5 sing 15 n n C15 C16 5K5 doub 16 n y C17 C16 5K5 sing 17 n y C01 C10 5K5 sing 18 n n C01 C02 5K5 sing 19 n n C10 C09 5K5 sing 20 n n C03 C02 5K5 sing 21 n n C03 C04 5K5 sing 22 n n C02 C07 5K5 sing 23 n n C04 C05 5K5 sing 24 n n C09 C08 5K5 sing 25 n n C07 C08 5K5 sing 26 n n C07 C06 5K5 sing 27 n n C05 C06 5K5 sing 28 n n C01 H1 5K5 sing 29 n n C01 H2 5K5 sing 30 n n C02 H3 5K5 sing 31 n n C03 H4 5K5 sing 32 n n C03 H5 5K5 sing 33 n n C04 H6 5K5 sing 34 n n C04 H7 5K5 sing 35 n n C05 H8 5K5 sing 36 n n C05 H9 5K5 sing 37 n n C06 H10 5K5 sing 38 n n C06 H11 5K5 sing 39 n n C07 H12 5K5 sing 40 n n C08 H13 5K5 sing 41 n n C08 H14 5K5 sing 42 n n C09 H15 5K5 sing 43 n n C09 H16 5K5 sing 44 n n C13 H19 5K5 sing 45 n n C14 H20 5K5 sing 46 n n O01 H21 5K5 sing 47 n n C16 H22 5K5 sing 48 n n C17 H23 5K5 sing 49 n n C19 H24 5K5 sing 50 n n C20 H25 5K5 sing 51 n n O02 H26 5K5 sing 52 n n C22 H27 5K5 sing 53 n n C23 H28 5K5 sing 54 n n # _atom_sites.entry_id 5EHJ _atom_sites.fract_transf_matrix[1][1] 0.018182 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00678 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 5K5 A 1 900 900 5K5 5K5 . F 3 5K5 B 1 901 901 5K5 5K5 . G 4 HOH A 1 1001 39 HOH HOH . G 4 HOH A 2 1002 91 HOH HOH . G 4 HOH A 3 1003 69 HOH HOH . G 4 HOH A 4 1004 30 HOH HOH . G 4 HOH A 5 1005 15 HOH HOH . G 4 HOH A 6 1006 9 HOH HOH . G 4 HOH A 7 1007 21 HOH HOH . G 4 HOH A 8 1008 88 HOH HOH . G 4 HOH A 9 1009 28 HOH HOH . G 4 HOH A 10 1010 7 HOH HOH . G 4 HOH A 11 1011 2 HOH HOH . G 4 HOH A 12 1012 43 HOH HOH . G 4 HOH A 13 1013 23 HOH HOH . G 4 HOH A 14 1014 3 HOH HOH . G 4 HOH A 15 1015 99 HOH HOH . G 4 HOH A 16 1016 34 HOH HOH . G 4 HOH A 17 1017 54 HOH HOH . G 4 HOH A 18 1018 52 HOH HOH . G 4 HOH A 19 1019 16 HOH HOH . G 4 HOH A 20 1020 62 HOH HOH . G 4 HOH A 21 1021 92 HOH HOH . G 4 HOH A 22 1022 68 HOH HOH . G 4 HOH A 23 1023 17 HOH HOH . G 4 HOH A 24 1024 32 HOH HOH . G 4 HOH A 25 1025 42 HOH HOH . G 4 HOH A 26 1026 26 HOH HOH . G 4 HOH A 27 1027 100 HOH HOH . G 4 HOH A 28 1028 64 HOH HOH . G 4 HOH A 29 1029 58 HOH HOH . G 4 HOH A 30 1030 104 HOH HOH . G 4 HOH A 31 1031 35 HOH HOH . G 4 HOH A 32 1032 33 HOH HOH . G 4 HOH A 33 1033 31 HOH HOH . G 4 HOH A 34 1034 11 HOH HOH . G 4 HOH A 35 1035 76 HOH HOH . G 4 HOH A 36 1036 66 HOH HOH . G 4 HOH A 37 1037 56 HOH HOH . G 4 HOH A 38 1038 65 HOH HOH . G 4 HOH A 39 1039 85 HOH HOH . G 4 HOH A 40 1040 105 HOH HOH . G 4 HOH A 41 1041 83 HOH HOH . G 4 HOH A 42 1042 82 HOH HOH . G 4 HOH A 43 1043 20 HOH HOH . G 4 HOH A 44 1044 72 HOH HOH . G 4 HOH A 45 1045 96 HOH HOH . G 4 HOH A 46 1046 45 HOH HOH . G 4 HOH A 47 1047 95 HOH HOH . G 4 HOH A 48 1048 94 HOH HOH . G 4 HOH A 49 1049 44 HOH HOH . G 4 HOH A 50 1050 93 HOH HOH . G 4 HOH A 51 1051 59 HOH HOH . G 4 HOH A 52 1052 87 HOH HOH . G 4 HOH A 53 1053 63 HOH HOH . G 4 HOH A 54 1054 60 HOH HOH . G 4 HOH A 55 1055 74 HOH HOH . G 4 HOH A 56 1056 103 HOH HOH . G 4 HOH A 57 1057 61 HOH HOH . G 4 HOH A 58 1058 46 HOH HOH . G 4 HOH A 59 1059 84 HOH HOH . H 4 HOH B 1 1001 29 HOH HOH . H 4 HOH B 2 1002 53 HOH HOH . H 4 HOH B 3 1003 41 HOH HOH . H 4 HOH B 4 1004 8 HOH HOH . H 4 HOH B 5 1005 98 HOH HOH . H 4 HOH B 6 1006 12 HOH HOH . H 4 HOH B 7 1007 101 HOH HOH . H 4 HOH B 8 1008 77 HOH HOH . H 4 HOH B 9 1009 75 HOH HOH . H 4 HOH B 10 1010 1 HOH HOH . H 4 HOH B 11 1011 24 HOH HOH . H 4 HOH B 12 1012 106 HOH HOH . H 4 HOH B 13 1013 22 HOH HOH . H 4 HOH B 14 1014 25 HOH HOH . H 4 HOH B 15 1015 18 HOH HOH . H 4 HOH B 16 1016 13 HOH HOH . H 4 HOH B 17 1017 4 HOH HOH . H 4 HOH B 18 1018 90 HOH HOH . H 4 HOH B 19 1019 50 HOH HOH . H 4 HOH B 20 1020 97 HOH HOH . H 4 HOH B 21 1021 102 HOH HOH . H 4 HOH B 22 1022 40 HOH HOH . H 4 HOH B 23 1023 73 HOH HOH . H 4 HOH B 24 1024 86 HOH HOH . H 4 HOH B 25 1025 57 HOH HOH . H 4 HOH B 26 1026 19 HOH HOH . H 4 HOH B 27 1027 38 HOH HOH . H 4 HOH B 28 1028 6 HOH HOH . H 4 HOH B 29 1029 27 HOH HOH . H 4 HOH B 30 1030 55 HOH HOH . H 4 HOH B 31 1031 71 HOH HOH . H 4 HOH B 32 1032 10 HOH HOH . H 4 HOH B 33 1033 78 HOH HOH . H 4 HOH B 34 1034 36 HOH HOH . H 4 HOH B 35 1035 51 HOH HOH . H 4 HOH B 36 1036 67 HOH HOH . H 4 HOH B 37 1037 47 HOH HOH . H 4 HOH B 38 1038 14 HOH HOH . H 4 HOH B 39 1039 81 HOH HOH . H 4 HOH B 40 1040 5 HOH HOH . H 4 HOH B 41 1041 107 HOH HOH . H 4 HOH B 42 1042 48 HOH HOH . I 4 HOH C 1 701 89 HOH HOH . I 4 HOH C 2 702 79 HOH HOH . I 4 HOH C 3 703 80 HOH HOH . J 4 HOH D 1 701 108 HOH HOH . J 4 HOH D 2 702 70 HOH HOH . J 4 HOH D 3 703 49 HOH HOH . J 4 HOH D 4 704 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5K5 . . . F 3 -4.04 20.741 4.113 1 36.93 ? C01 5K5 901 B 1 HETATM 2 C C02 5K5 . . . F 3 -2.958 21.785 4.294 1 37.84 ? C02 5K5 901 B 1 HETATM 3 C C03 5K5 . . . F 3 -1.71 21.352 3.537 1 39.18 ? C03 5K5 901 B 1 HETATM 4 C C04 5K5 . . . F 3 -0.705 22.463 3.194 1 39.74 ? C04 5K5 901 B 1 HETATM 5 C C05 5K5 . . . F 3 -0.953 23.782 3.927 1 39.66 ? C05 5K5 901 B 1 HETATM 6 C C06 5K5 . . . F 3 -2.41 24.19 4.074 1 38.49 ? C06 5K5 901 B 1 HETATM 7 C C07 5K5 . . . F 3 -3.443 23.121 3.788 1 37.77 ? C07 5K5 901 B 1 HETATM 8 C C08 5K5 . . . F 3 -4.696 23.497 4.537 1 37.3 ? C08 5K5 901 B 1 HETATM 9 C C09 5K5 . . . F 3 -5.738 22.391 4.366 1 36.85 ? C09 5K5 901 B 1 HETATM 10 C C10 5K5 . . . F 3 -5.254 21.119 4.694 1 35.94 ? C10 5K5 901 B 1 HETATM 11 C C11 5K5 . . . F 3 -6.013 20.203 5.443 1 32.95 ? C11 5K5 901 B 1 HETATM 12 C C12 5K5 . . . F 3 -7.311 20.553 5.869 1 33.06 ? C12 5K5 901 B 1 HETATM 13 C C13 5K5 . . . F 3 -8.303 20.967 4.958 1 33.01 ? C13 5K5 901 B 1 HETATM 14 C C14 5K5 . . . F 3 -9.578 21.316 5.392 1 32.1 ? C14 5K5 901 B 1 HETATM 15 C C15 5K5 . . . F 3 -9.877 21.245 6.723 1 31.63 ? C15 5K5 901 B 1 HETATM 16 O O01 5K5 . . . F 3 -11.076 21.564 7.168 1 31.1 ? O01 5K5 901 B 1 HETATM 17 C C16 5K5 . . . F 3 -8.935 20.826 7.631 1 33.14 ? C16 5K5 901 B 1 HETATM 18 C C17 5K5 . . . F 3 -7.656 20.493 7.216 1 33.86 ? C17 5K5 901 B 1 HETATM 19 C C18 5K5 . . . F 3 -5.317 19.186 6.12 1 29.18 ? C18 5K5 901 B 1 HETATM 20 C C19 5K5 . . . F 3 -4.22 19.577 6.898 1 28.32 ? C19 5K5 901 B 1 HETATM 21 C C20 5K5 . . . F 3 -3.473 18.644 7.602 1 27.5 ? C20 5K5 901 B 1 HETATM 22 C C21 5K5 . . . F 3 -3.823 17.308 7.51 1 27.64 ? C21 5K5 901 B 1 HETATM 23 O O02 5K5 . . . F 3 -3.124 16.399 8.17 1 29.07 ? O02 5K5 901 B 1 HETATM 24 C C22 5K5 . . . F 3 -4.904 16.911 6.742 1 27.21 ? C22 5K5 901 B 1 HETATM 25 C C23 5K5 . . . F 3 -5.646 17.845 6.032 1 27.4 ? C23 5K5 901 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #