data_5EHQ # _model_server_result.job_id XXjD9r0lcesSQhtud5d2Uw _model_server_result.datetime_utc '2024-10-15 00:19:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ehq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 5EHQ # _exptl.entry_id 5EHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EHQ _cell.length_a 79.82 _cell.length_b 113.16 _cell.length_c 225.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1501 NAG 2 n C FUC 2 C 2 FUC C 1506 FUC 3 n D NAG 1 D 1 NAG C 1504 NAG 3 n D NAG 2 D 2 NAG C 1507 NAG 3 n D FUC 3 D 3 FUC C 1505 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 E C1 NAG . A NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B ND2 ASN 350 B ASN 350 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 B ND2 ASN 464 B ASN 464 1_555 G C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 359 n n C1 O1 NAG sing 360 n n C1 O5 NAG sing 361 n n C1 H1 NAG sing 362 n n C2 C3 NAG sing 363 n n C2 N2 NAG sing 364 n n C2 H2 NAG sing 365 n n C3 C4 NAG sing 366 n n C3 O3 NAG sing 367 n n C3 H3 NAG sing 368 n n C4 C5 NAG sing 369 n n C4 O4 NAG sing 370 n n C4 H4 NAG sing 371 n n C5 C6 NAG sing 372 n n C5 O5 NAG sing 373 n n C5 H5 NAG sing 374 n n C6 O6 NAG sing 375 n n C6 H61 NAG sing 376 n n C6 H62 NAG sing 377 n n C7 C8 NAG sing 378 n n C7 N2 NAG sing 379 n n C7 O7 NAG doub 380 n n C8 H81 NAG sing 381 n n C8 H82 NAG sing 382 n n C8 H83 NAG sing 383 n n N2 HN2 NAG sing 384 n n O1 HO1 NAG sing 385 n n O3 HO3 NAG sing 386 n n O4 HO4 NAG sing 387 n n O6 HO6 NAG sing 388 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5EHQ _atom_sites.fract_transf_matrix[1][1] 0.012528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 1503 1502 NAG NAG . F 5 5O2 A 1 1504 901 5O2 TZ5 . G 4 NAG B 1 601 1503 NAG NAG . H 5 5O2 B 1 605 951 5O2 TZ5 . I 6 P6G B 1 606 1901 P6G P6G . J 7 HOH A 1 1601 10 HOH HOH . J 7 HOH A 2 1602 11 HOH HOH . J 7 HOH A 3 1603 7 HOH HOH . J 7 HOH A 4 1604 144 HOH HOH . J 7 HOH A 5 1605 39 HOH HOH . J 7 HOH A 6 1606 81 HOH HOH . J 7 HOH A 7 1607 98 HOH HOH . J 7 HOH A 8 1608 111 HOH HOH . J 7 HOH A 9 1609 15 HOH HOH . J 7 HOH A 10 1610 84 HOH HOH . J 7 HOH A 11 1611 64 HOH HOH . J 7 HOH A 12 1612 13 HOH HOH . J 7 HOH A 13 1613 156 HOH HOH . J 7 HOH A 14 1614 3 HOH HOH . J 7 HOH A 15 1615 36 HOH HOH . J 7 HOH A 16 1616 42 HOH HOH . J 7 HOH A 17 1617 46 HOH HOH . J 7 HOH A 18 1618 130 HOH HOH . J 7 HOH A 19 1619 138 HOH HOH . J 7 HOH A 20 1620 118 HOH HOH . J 7 HOH A 21 1621 134 HOH HOH . J 7 HOH A 22 1622 87 HOH HOH . J 7 HOH A 23 1623 113 HOH HOH . J 7 HOH A 24 1624 26 HOH HOH . J 7 HOH A 25 1625 146 HOH HOH . J 7 HOH A 26 1626 83 HOH HOH . J 7 HOH A 27 1627 80 HOH HOH . J 7 HOH A 28 1628 12 HOH HOH . J 7 HOH A 29 1629 128 HOH HOH . J 7 HOH A 30 1630 102 HOH HOH . J 7 HOH A 31 1631 57 HOH HOH . J 7 HOH A 32 1632 77 HOH HOH . J 7 HOH A 33 1633 85 HOH HOH . J 7 HOH A 34 1634 65 HOH HOH . J 7 HOH A 35 1635 32 HOH HOH . J 7 HOH A 36 1636 75 HOH HOH . J 7 HOH A 37 1637 136 HOH HOH . J 7 HOH A 38 1638 70 HOH HOH . J 7 HOH A 39 1639 45 HOH HOH . J 7 HOH A 40 1640 139 HOH HOH . J 7 HOH A 41 1641 106 HOH HOH . J 7 HOH A 42 1642 88 HOH HOH . J 7 HOH A 43 1643 100 HOH HOH . J 7 HOH A 44 1644 145 HOH HOH . J 7 HOH A 45 1645 159 HOH HOH . J 7 HOH A 46 1646 114 HOH HOH . J 7 HOH A 47 1647 116 HOH HOH . J 7 HOH A 48 1648 155 HOH HOH . J 7 HOH A 49 1649 67 HOH HOH . J 7 HOH A 50 1650 95 HOH HOH . J 7 HOH A 51 1651 157 HOH HOH . J 7 HOH A 52 1652 92 HOH HOH . J 7 HOH A 53 1653 107 HOH HOH . J 7 HOH A 54 1654 8 HOH HOH . J 7 HOH A 55 1655 131 HOH HOH . J 7 HOH A 56 1656 117 HOH HOH . J 7 HOH A 57 1657 124 HOH HOH . J 7 HOH A 58 1658 154 HOH HOH . J 7 HOH A 59 1659 40 HOH HOH . J 7 HOH A 60 1660 137 HOH HOH . J 7 HOH A 61 1661 96 HOH HOH . J 7 HOH A 62 1662 129 HOH HOH . J 7 HOH A 63 1663 164 HOH HOH . J 7 HOH A 64 1664 6 HOH HOH . J 7 HOH A 65 1665 127 HOH HOH . J 7 HOH A 66 1666 133 HOH HOH . J 7 HOH A 67 1667 44 HOH HOH . J 7 HOH A 68 1668 140 HOH HOH . J 7 HOH A 69 1669 20 HOH HOH . J 7 HOH A 70 1670 22 HOH HOH . J 7 HOH A 71 1671 59 HOH HOH . J 7 HOH A 72 1672 120 HOH HOH . J 7 HOH A 73 1673 21 HOH HOH . J 7 HOH A 74 1674 143 HOH HOH . J 7 HOH A 75 1675 68 HOH HOH . J 7 HOH A 76 1676 52 HOH HOH . J 7 HOH A 77 1677 47 HOH HOH . J 7 HOH A 78 1678 163 HOH HOH . J 7 HOH A 79 1679 162 HOH HOH . J 7 HOH A 80 1680 37 HOH HOH . J 7 HOH A 81 1681 50 HOH HOH . J 7 HOH A 82 1682 165 HOH HOH . J 7 HOH A 83 1683 126 HOH HOH . K 7 HOH B 1 701 110 HOH HOH . K 7 HOH B 2 702 108 HOH HOH . K 7 HOH B 3 703 86 HOH HOH . K 7 HOH B 4 704 103 HOH HOH . K 7 HOH B 5 705 93 HOH HOH . K 7 HOH B 6 706 17 HOH HOH . K 7 HOH B 7 707 41 HOH HOH . K 7 HOH B 8 708 89 HOH HOH . K 7 HOH B 9 709 90 HOH HOH . K 7 HOH B 10 710 19 HOH HOH . K 7 HOH B 11 711 79 HOH HOH . K 7 HOH B 12 712 9 HOH HOH . K 7 HOH B 13 713 112 HOH HOH . K 7 HOH B 14 714 153 HOH HOH . K 7 HOH B 15 715 99 HOH HOH . K 7 HOH B 16 716 119 HOH HOH . K 7 HOH B 17 717 82 HOH HOH . K 7 HOH B 18 718 91 HOH HOH . K 7 HOH B 19 719 76 HOH HOH . K 7 HOH B 20 720 152 HOH HOH . K 7 HOH B 21 721 43 HOH HOH . K 7 HOH B 22 722 94 HOH HOH . K 7 HOH B 23 723 123 HOH HOH . K 7 HOH B 24 724 142 HOH HOH . K 7 HOH B 25 725 4 HOH HOH . K 7 HOH B 26 726 2 HOH HOH . K 7 HOH B 27 727 109 HOH HOH . K 7 HOH B 28 728 97 HOH HOH . K 7 HOH B 29 729 24 HOH HOH . K 7 HOH B 30 730 115 HOH HOH . K 7 HOH B 31 731 35 HOH HOH . K 7 HOH B 32 732 5 HOH HOH . K 7 HOH B 33 733 158 HOH HOH . K 7 HOH B 34 734 141 HOH HOH . K 7 HOH B 35 735 74 HOH HOH . K 7 HOH B 36 736 148 HOH HOH . K 7 HOH B 37 737 161 HOH HOH . K 7 HOH B 38 738 125 HOH HOH . K 7 HOH B 39 739 104 HOH HOH . K 7 HOH B 40 740 101 HOH HOH . K 7 HOH B 41 741 122 HOH HOH . K 7 HOH B 42 742 121 HOH HOH . K 7 HOH B 43 743 78 HOH HOH . K 7 HOH B 44 744 150 HOH HOH . K 7 HOH B 45 745 147 HOH HOH . K 7 HOH B 46 746 1 HOH HOH . K 7 HOH B 47 747 63 HOH HOH . K 7 HOH B 48 748 132 HOH HOH . K 7 HOH B 49 749 27 HOH HOH . K 7 HOH B 50 750 105 HOH HOH . K 7 HOH B 51 751 149 HOH HOH . K 7 HOH B 52 752 58 HOH HOH . K 7 HOH B 53 753 160 HOH HOH . K 7 HOH B 54 754 51 HOH HOH . K 7 HOH B 55 755 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 4 -18.194 -7.185 -36.171 1 127.06 ? C1 NAG 601 B 1 HETATM 2 C C2 NAG . . . G 4 -17.366 -8.231 -36.922 1 129.06 ? C2 NAG 601 B 1 HETATM 3 C C3 NAG . . . G 4 -18.306 -9.141 -37.719 1 130.38 ? C3 NAG 601 B 1 HETATM 4 C C4 NAG . . . G 4 -19.359 -9.77 -36.807 1 131.35 ? C4 NAG 601 B 1 HETATM 5 C C5 NAG . . . G 4 -20.096 -8.678 -36.024 1 130.29 ? C5 NAG 601 B 1 HETATM 6 C C6 NAG . . . G 4 -21.102 -9.195 -35.007 1 128.53 ? C6 NAG 601 B 1 HETATM 7 C C7 NAG . . . G 4 -15.065 -7.721 -37.664 1 127.22 ? C7 NAG 601 B 1 HETATM 8 C C8 NAG . . . G 4 -14.229 -6.944 -38.637 1 125.87 ? C8 NAG 601 B 1 HETATM 9 N N2 NAG . . . G 4 -16.396 -7.595 -37.803 1 128.64 ? N2 NAG 601 B 1 HETATM 10 O O3 NAG . . . G 4 -17.561 -10.156 -38.388 1 129.84 ? O3 NAG 601 B 1 HETATM 11 O O4 NAG . . . G 4 -20.268 -10.555 -37.581 1 131.19 ? O4 NAG 601 B 1 HETATM 12 O O5 NAG . . . G 4 -19.153 -7.838 -35.321 1 129.26 ? O5 NAG 601 B 1 HETATM 13 O O6 NAG . . . G 4 -20.504 -9.879 -33.909 1 126.91 ? O6 NAG 601 B 1 HETATM 14 O O7 NAG . . . G 4 -14.56 -8.426 -36.794 1 127.2 ? O7 NAG 601 B 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 505 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #