data_5EHQ # _model_server_result.job_id 1LJlIQ7XV64zMbB3j7WgaQ _model_server_result.datetime_utc '2024-10-15 00:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ehq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":606}' # _entry.id 5EHQ # _exptl.entry_id 5EHQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EHQ _cell.length_a 79.82 _cell.length_b 113.16 _cell.length_c 225.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EHQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O6 HO6 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1501 NAG 2 n C FUC 2 C 2 FUC C 1506 FUC 3 n D NAG 1 D 1 NAG C 1504 NAG 3 n D NAG 2 D 2 NAG C 1507 NAG 3 n D FUC 3 D 3 FUC C 1505 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 E C1 NAG . A NAG 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 B ND2 ASN 350 B ASN 350 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 B ND2 ASN 464 B ASN 464 1_555 G C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 389 n n O1 H1 P6G sing 390 n n C2 C3 P6G sing 391 n n C2 H21 P6G sing 392 n n C2 H22 P6G sing 393 n n C3 O4 P6G sing 394 n n C3 H31 P6G sing 395 n n C3 H32 P6G sing 396 n n O4 C5 P6G sing 397 n n C5 C6 P6G sing 398 n n C5 H51 P6G sing 399 n n C5 H52 P6G sing 400 n n C6 O7 P6G sing 401 n n C6 H61 P6G sing 402 n n C6 H62 P6G sing 403 n n O7 C8 P6G sing 404 n n C8 C9 P6G sing 405 n n C8 H81 P6G sing 406 n n C8 H82 P6G sing 407 n n C9 O10 P6G sing 408 n n C9 H91 P6G sing 409 n n C9 H92 P6G sing 410 n n O10 C11 P6G sing 411 n n C11 C12 P6G sing 412 n n C11 H111 P6G sing 413 n n C11 H112 P6G sing 414 n n C12 O13 P6G sing 415 n n C12 H121 P6G sing 416 n n C12 H122 P6G sing 417 n n O13 C14 P6G sing 418 n n C14 C15 P6G sing 419 n n C14 H141 P6G sing 420 n n C14 H142 P6G sing 421 n n C15 O16 P6G sing 422 n n C15 H151 P6G sing 423 n n C15 H152 P6G sing 424 n n O16 C17 P6G sing 425 n n C17 C18 P6G sing 426 n n C17 H171 P6G sing 427 n n C17 H172 P6G sing 428 n n C18 O19 P6G sing 429 n n C18 H181 P6G sing 430 n n C18 H182 P6G sing 431 n n O19 H19 P6G sing 432 n n # _atom_sites.entry_id 5EHQ _atom_sites.fract_transf_matrix[1][1] 0.012528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 NAG A 1 1503 1502 NAG NAG . F 5 5O2 A 1 1504 901 5O2 TZ5 . G 4 NAG B 1 601 1503 NAG NAG . H 5 5O2 B 1 605 951 5O2 TZ5 . I 6 P6G B 1 606 1901 P6G P6G . J 7 HOH A 1 1601 10 HOH HOH . J 7 HOH A 2 1602 11 HOH HOH . J 7 HOH A 3 1603 7 HOH HOH . J 7 HOH A 4 1604 144 HOH HOH . J 7 HOH A 5 1605 39 HOH HOH . J 7 HOH A 6 1606 81 HOH HOH . J 7 HOH A 7 1607 98 HOH HOH . J 7 HOH A 8 1608 111 HOH HOH . J 7 HOH A 9 1609 15 HOH HOH . J 7 HOH A 10 1610 84 HOH HOH . J 7 HOH A 11 1611 64 HOH HOH . J 7 HOH A 12 1612 13 HOH HOH . J 7 HOH A 13 1613 156 HOH HOH . J 7 HOH A 14 1614 3 HOH HOH . J 7 HOH A 15 1615 36 HOH HOH . J 7 HOH A 16 1616 42 HOH HOH . J 7 HOH A 17 1617 46 HOH HOH . J 7 HOH A 18 1618 130 HOH HOH . J 7 HOH A 19 1619 138 HOH HOH . J 7 HOH A 20 1620 118 HOH HOH . J 7 HOH A 21 1621 134 HOH HOH . J 7 HOH A 22 1622 87 HOH HOH . J 7 HOH A 23 1623 113 HOH HOH . J 7 HOH A 24 1624 26 HOH HOH . J 7 HOH A 25 1625 146 HOH HOH . J 7 HOH A 26 1626 83 HOH HOH . J 7 HOH A 27 1627 80 HOH HOH . J 7 HOH A 28 1628 12 HOH HOH . J 7 HOH A 29 1629 128 HOH HOH . J 7 HOH A 30 1630 102 HOH HOH . J 7 HOH A 31 1631 57 HOH HOH . J 7 HOH A 32 1632 77 HOH HOH . J 7 HOH A 33 1633 85 HOH HOH . J 7 HOH A 34 1634 65 HOH HOH . J 7 HOH A 35 1635 32 HOH HOH . J 7 HOH A 36 1636 75 HOH HOH . J 7 HOH A 37 1637 136 HOH HOH . J 7 HOH A 38 1638 70 HOH HOH . J 7 HOH A 39 1639 45 HOH HOH . J 7 HOH A 40 1640 139 HOH HOH . J 7 HOH A 41 1641 106 HOH HOH . J 7 HOH A 42 1642 88 HOH HOH . J 7 HOH A 43 1643 100 HOH HOH . J 7 HOH A 44 1644 145 HOH HOH . J 7 HOH A 45 1645 159 HOH HOH . J 7 HOH A 46 1646 114 HOH HOH . J 7 HOH A 47 1647 116 HOH HOH . J 7 HOH A 48 1648 155 HOH HOH . J 7 HOH A 49 1649 67 HOH HOH . J 7 HOH A 50 1650 95 HOH HOH . J 7 HOH A 51 1651 157 HOH HOH . J 7 HOH A 52 1652 92 HOH HOH . J 7 HOH A 53 1653 107 HOH HOH . J 7 HOH A 54 1654 8 HOH HOH . J 7 HOH A 55 1655 131 HOH HOH . J 7 HOH A 56 1656 117 HOH HOH . J 7 HOH A 57 1657 124 HOH HOH . J 7 HOH A 58 1658 154 HOH HOH . J 7 HOH A 59 1659 40 HOH HOH . J 7 HOH A 60 1660 137 HOH HOH . J 7 HOH A 61 1661 96 HOH HOH . J 7 HOH A 62 1662 129 HOH HOH . J 7 HOH A 63 1663 164 HOH HOH . J 7 HOH A 64 1664 6 HOH HOH . J 7 HOH A 65 1665 127 HOH HOH . J 7 HOH A 66 1666 133 HOH HOH . J 7 HOH A 67 1667 44 HOH HOH . J 7 HOH A 68 1668 140 HOH HOH . J 7 HOH A 69 1669 20 HOH HOH . J 7 HOH A 70 1670 22 HOH HOH . J 7 HOH A 71 1671 59 HOH HOH . J 7 HOH A 72 1672 120 HOH HOH . J 7 HOH A 73 1673 21 HOH HOH . J 7 HOH A 74 1674 143 HOH HOH . J 7 HOH A 75 1675 68 HOH HOH . J 7 HOH A 76 1676 52 HOH HOH . J 7 HOH A 77 1677 47 HOH HOH . J 7 HOH A 78 1678 163 HOH HOH . J 7 HOH A 79 1679 162 HOH HOH . J 7 HOH A 80 1680 37 HOH HOH . J 7 HOH A 81 1681 50 HOH HOH . J 7 HOH A 82 1682 165 HOH HOH . J 7 HOH A 83 1683 126 HOH HOH . K 7 HOH B 1 701 110 HOH HOH . K 7 HOH B 2 702 108 HOH HOH . K 7 HOH B 3 703 86 HOH HOH . K 7 HOH B 4 704 103 HOH HOH . K 7 HOH B 5 705 93 HOH HOH . K 7 HOH B 6 706 17 HOH HOH . K 7 HOH B 7 707 41 HOH HOH . K 7 HOH B 8 708 89 HOH HOH . K 7 HOH B 9 709 90 HOH HOH . K 7 HOH B 10 710 19 HOH HOH . K 7 HOH B 11 711 79 HOH HOH . K 7 HOH B 12 712 9 HOH HOH . K 7 HOH B 13 713 112 HOH HOH . K 7 HOH B 14 714 153 HOH HOH . K 7 HOH B 15 715 99 HOH HOH . K 7 HOH B 16 716 119 HOH HOH . K 7 HOH B 17 717 82 HOH HOH . K 7 HOH B 18 718 91 HOH HOH . K 7 HOH B 19 719 76 HOH HOH . K 7 HOH B 20 720 152 HOH HOH . K 7 HOH B 21 721 43 HOH HOH . K 7 HOH B 22 722 94 HOH HOH . K 7 HOH B 23 723 123 HOH HOH . K 7 HOH B 24 724 142 HOH HOH . K 7 HOH B 25 725 4 HOH HOH . K 7 HOH B 26 726 2 HOH HOH . K 7 HOH B 27 727 109 HOH HOH . K 7 HOH B 28 728 97 HOH HOH . K 7 HOH B 29 729 24 HOH HOH . K 7 HOH B 30 730 115 HOH HOH . K 7 HOH B 31 731 35 HOH HOH . K 7 HOH B 32 732 5 HOH HOH . K 7 HOH B 33 733 158 HOH HOH . K 7 HOH B 34 734 141 HOH HOH . K 7 HOH B 35 735 74 HOH HOH . K 7 HOH B 36 736 148 HOH HOH . K 7 HOH B 37 737 161 HOH HOH . K 7 HOH B 38 738 125 HOH HOH . K 7 HOH B 39 739 104 HOH HOH . K 7 HOH B 40 740 101 HOH HOH . K 7 HOH B 41 741 122 HOH HOH . K 7 HOH B 42 742 121 HOH HOH . K 7 HOH B 43 743 78 HOH HOH . K 7 HOH B 44 744 150 HOH HOH . K 7 HOH B 45 745 147 HOH HOH . K 7 HOH B 46 746 1 HOH HOH . K 7 HOH B 47 747 63 HOH HOH . K 7 HOH B 48 748 132 HOH HOH . K 7 HOH B 49 749 27 HOH HOH . K 7 HOH B 50 750 105 HOH HOH . K 7 HOH B 51 751 149 HOH HOH . K 7 HOH B 52 752 58 HOH HOH . K 7 HOH B 53 753 160 HOH HOH . K 7 HOH B 54 754 51 HOH HOH . K 7 HOH B 55 755 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . I 6 13.387 9.417 -13.28 1 82.14 ? O1 P6G 606 B 1 HETATM 2 C C2 P6G . . . I 6 14.399 8.714 -12.506 1 84.74 ? C2 P6G 606 B 1 HETATM 3 C C3 P6G . . . I 6 14.929 7.246 -12.593 1 85.56 ? C3 P6G 606 B 1 HETATM 4 O O4 P6G . . . I 6 15.864 6.655 -11.471 1 85.21 ? O4 P6G 606 B 1 HETATM 5 C C5 P6G . . . I 6 17.199 7.201 -11.344 1 84.52 ? C5 P6G 606 B 1 HETATM 6 C C6 P6G . . . I 6 17.83 6.508 -10.251 1 82.98 ? C6 P6G 606 B 1 HETATM 7 O O7 P6G . . . I 6 19.351 6.289 -10.269 1 81.06 ? O7 P6G 606 B 1 HETATM 8 C C8 P6G . . . I 6 19.747 4.905 -10.336 1 77.85 ? C8 P6G 606 B 1 HETATM 9 C C9 P6G . . . I 6 21.174 4.747 -10.92 1 76.94 ? C9 P6G 606 B 1 HETATM 10 O O10 P6G . . . I 6 21.614 5.717 -12.145 1 77.02 ? O10 P6G 606 B 1 HETATM 11 C C11 P6G . . . I 6 22.881 5.434 -12.761 1 71.48 ? C11 P6G 606 B 1 HETATM 12 C C12 P6G . . . I 6 23.185 6.356 -13.837 1 67.6 ? C12 P6G 606 B 1 HETATM 13 O O13 P6G . . . I 6 23.537 7.879 -13.594 1 65.08 ? O13 P6G 606 B 1 HETATM 14 C C14 P6G . . . I 6 22.454 8.843 -13.754 1 68.61 ? C14 P6G 606 B 1 HETATM 15 C C15 P6G . . . I 6 22.913 10.19 -14.061 1 73.79 ? C15 P6G 606 B 1 HETATM 16 O O16 P6G . . . I 6 21.952 11.14 -14.899 1 80.64 ? O16 P6G 606 B 1 HETATM 17 C C17 P6G . . . I 6 20.607 10.727 -15.27 1 83.72 ? C17 P6G 606 B 1 HETATM 18 C C18 P6G . . . I 6 19.624 11.177 -14.337 1 84.63 ? C18 P6G 606 B 1 HETATM 19 O O19 P6G . . . I 6 19.08 10.059 -13.329 1 85.82 ? O19 P6G 606 B 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 55 _model_server_stats.create_model_time_ms 81 _model_server_stats.query_time_ms 496 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 19 #