data_5EHT # _model_server_result.job_id zmIaPlPEHvp2fX74El47VA _model_server_result.datetime_utc '2024-11-08 06:38:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eht # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 5EHT # _exptl.entry_id 5EHT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EHT _cell.length_a 54.638 _cell.length_b 55.735 _cell.length_c 79.878 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EHT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 66 A LEU 63 1_555 A N CSO 67 A CSO 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.488 ? covale ? covale2 A C CSO 67 A CSO 64 1_555 A N ASN 68 A ASN 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? metalc ? metalc1 A NE2 HIS 107 A HIS 104 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc2 A ND1 HIS 109 A HIS 106 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 A OD2 ASP 111 A ASP 108 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc4 A NE2 HIS 112 A HIS 109 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc5 A NE2 HIS 172 A HIS 169 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc6 A OD2 ASP 194 A ASP 191 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc7 A OD2 ASP 194 A ASP 191 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc8 A NE2 HIS 238 A HIS 235 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc9 B ZN ZN . A ZN 301 1_555 J O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 C ZN ZN . A ZN 302 1_555 J O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 143 n n C1 C2 GOL sing 144 n n C1 H11 GOL sing 145 n n C1 H12 GOL sing 146 n n O1 HO1 GOL sing 147 n n C2 O2 GOL sing 148 n n C2 C3 GOL sing 149 n n C2 H2 GOL sing 150 n n O2 HO2 GOL sing 151 n n C3 O3 GOL sing 152 n n C3 H31 GOL sing 153 n n C3 H32 GOL sing 154 n n O3 HO3 GOL sing 155 n n # _atom_sites.entry_id 5EHT _atom_sites.fract_transf_matrix[1][1] 0.018302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 251 ZN ZN . C 2 ZN A 1 302 252 ZN ZN . D 3 GOL A 1 303 258 GOL GOL . E 3 GOL A 1 304 260 GOL GOL . F 3 GOL A 1 305 261 GOL GOL . G 3 GOL A 1 306 262 GOL GOL . H 3 GOL A 1 307 263 GOL GOL . I 3 GOL A 1 308 264 GOL GOL . J 4 HOH A 1 401 118 HOH HOH . J 4 HOH A 2 402 10 HOH HOH . J 4 HOH A 3 403 12 HOH HOH . J 4 HOH A 4 404 8 HOH HOH . J 4 HOH A 5 405 119 HOH HOH . J 4 HOH A 6 406 212 HOH HOH . J 4 HOH A 7 407 90 HOH HOH . J 4 HOH A 8 408 190 HOH HOH . J 4 HOH A 9 409 27 HOH HOH . J 4 HOH A 10 410 246 HOH HOH . J 4 HOH A 11 411 11 HOH HOH . J 4 HOH A 12 412 126 HOH HOH . J 4 HOH A 13 413 205 HOH HOH . J 4 HOH A 14 414 92 HOH HOH . J 4 HOH A 15 415 61 HOH HOH . J 4 HOH A 16 416 241 HOH HOH . J 4 HOH A 17 417 30 HOH HOH . J 4 HOH A 18 418 40 HOH HOH . J 4 HOH A 19 419 75 HOH HOH . J 4 HOH A 20 420 15 HOH HOH . J 4 HOH A 21 421 55 HOH HOH . J 4 HOH A 22 422 107 HOH HOH . J 4 HOH A 23 423 176 HOH HOH . J 4 HOH A 24 424 47 HOH HOH . J 4 HOH A 25 425 110 HOH HOH . J 4 HOH A 26 426 187 HOH HOH . J 4 HOH A 27 427 226 HOH HOH . J 4 HOH A 28 428 54 HOH HOH . J 4 HOH A 29 429 172 HOH HOH . J 4 HOH A 30 430 164 HOH HOH . J 4 HOH A 31 431 243 HOH HOH . J 4 HOH A 32 432 117 HOH HOH . J 4 HOH A 33 433 140 HOH HOH . J 4 HOH A 34 434 201 HOH HOH . J 4 HOH A 35 435 103 HOH HOH . J 4 HOH A 36 436 18 HOH HOH . J 4 HOH A 37 437 156 HOH HOH . J 4 HOH A 38 438 39 HOH HOH . J 4 HOH A 39 439 174 HOH HOH . J 4 HOH A 40 440 214 HOH HOH . J 4 HOH A 41 441 223 HOH HOH . J 4 HOH A 42 442 76 HOH HOH . J 4 HOH A 43 443 233 HOH HOH . J 4 HOH A 44 444 25 HOH HOH . J 4 HOH A 45 445 131 HOH HOH . J 4 HOH A 46 446 41 HOH HOH . J 4 HOH A 47 447 228 HOH HOH . J 4 HOH A 48 448 179 HOH HOH . J 4 HOH A 49 449 240 HOH HOH . J 4 HOH A 50 450 50 HOH HOH . J 4 HOH A 51 451 150 HOH HOH . J 4 HOH A 52 452 175 HOH HOH . J 4 HOH A 53 453 83 HOH HOH . J 4 HOH A 54 454 163 HOH HOH . J 4 HOH A 55 455 106 HOH HOH . J 4 HOH A 56 456 183 HOH HOH . J 4 HOH A 57 457 188 HOH HOH . J 4 HOH A 58 458 137 HOH HOH . J 4 HOH A 59 459 170 HOH HOH . J 4 HOH A 60 460 185 HOH HOH . J 4 HOH A 61 461 203 HOH HOH . J 4 HOH A 62 462 169 HOH HOH . J 4 HOH A 63 463 58 HOH HOH . J 4 HOH A 64 464 227 HOH HOH . J 4 HOH A 65 465 219 HOH HOH . J 4 HOH A 66 466 229 HOH HOH . J 4 HOH A 67 467 101 HOH HOH . J 4 HOH A 68 468 158 HOH HOH . J 4 HOH A 69 469 138 HOH HOH . J 4 HOH A 70 470 91 HOH HOH . J 4 HOH A 71 471 207 HOH HOH . J 4 HOH A 72 472 204 HOH HOH . J 4 HOH A 73 473 121 HOH HOH . J 4 HOH A 74 474 222 HOH HOH . J 4 HOH A 75 475 184 HOH HOH . J 4 HOH A 76 476 244 HOH HOH . J 4 HOH A 77 477 139 HOH HOH . J 4 HOH A 78 478 166 HOH HOH . J 4 HOH A 79 479 160 HOH HOH . J 4 HOH A 80 480 217 HOH HOH . J 4 HOH A 81 481 68 HOH HOH . J 4 HOH A 82 482 9 HOH HOH . J 4 HOH A 83 483 98 HOH HOH . J 4 HOH A 84 484 149 HOH HOH . J 4 HOH A 85 485 199 HOH HOH . J 4 HOH A 86 486 144 HOH HOH . J 4 HOH A 87 487 128 HOH HOH . J 4 HOH A 88 488 129 HOH HOH . J 4 HOH A 89 489 220 HOH HOH . J 4 HOH A 90 490 152 HOH HOH . J 4 HOH A 91 491 209 HOH HOH . J 4 HOH A 92 492 7 HOH HOH . J 4 HOH A 93 493 194 HOH HOH . J 4 HOH A 94 494 28 HOH HOH . J 4 HOH A 95 495 165 HOH HOH . J 4 HOH A 96 496 136 HOH HOH . J 4 HOH A 97 497 130 HOH HOH . J 4 HOH A 98 498 151 HOH HOH . J 4 HOH A 99 499 181 HOH HOH . J 4 HOH A 100 500 122 HOH HOH . J 4 HOH A 101 501 225 HOH HOH . J 4 HOH A 102 502 134 HOH HOH . J 4 HOH A 103 503 178 HOH HOH . J 4 HOH A 104 504 177 HOH HOH . J 4 HOH A 105 505 3 HOH HOH . J 4 HOH A 106 506 211 HOH HOH . J 4 HOH A 107 507 154 HOH HOH . J 4 HOH A 108 508 167 HOH HOH . J 4 HOH A 109 509 24 HOH HOH . J 4 HOH A 110 510 78 HOH HOH . J 4 HOH A 111 511 180 HOH HOH . J 4 HOH A 112 512 141 HOH HOH . J 4 HOH A 113 513 146 HOH HOH . J 4 HOH A 114 514 89 HOH HOH . J 4 HOH A 115 515 242 HOH HOH . J 4 HOH A 116 516 23 HOH HOH . J 4 HOH A 117 517 171 HOH HOH . J 4 HOH A 118 518 13 HOH HOH . J 4 HOH A 119 519 52 HOH HOH . J 4 HOH A 120 520 45 HOH HOH . J 4 HOH A 121 521 142 HOH HOH . J 4 HOH A 122 522 125 HOH HOH . J 4 HOH A 123 523 135 HOH HOH . J 4 HOH A 124 524 85 HOH HOH . J 4 HOH A 125 525 221 HOH HOH . J 4 HOH A 126 526 193 HOH HOH . J 4 HOH A 127 527 157 HOH HOH . J 4 HOH A 128 528 191 HOH HOH . J 4 HOH A 129 529 93 HOH HOH . J 4 HOH A 130 530 202 HOH HOH . J 4 HOH A 131 531 189 HOH HOH . J 4 HOH A 132 532 200 HOH HOH . J 4 HOH A 133 533 133 HOH HOH . J 4 HOH A 134 534 29 HOH HOH . J 4 HOH A 135 535 132 HOH HOH . J 4 HOH A 136 536 143 HOH HOH . J 4 HOH A 137 537 186 HOH HOH . J 4 HOH A 138 538 4 HOH HOH . J 4 HOH A 139 539 195 HOH HOH . J 4 HOH A 140 540 5 HOH HOH . J 4 HOH A 141 541 162 HOH HOH . J 4 HOH A 142 542 206 HOH HOH . J 4 HOH A 143 543 155 HOH HOH . J 4 HOH A 144 544 145 HOH HOH . J 4 HOH A 145 545 234 HOH HOH . J 4 HOH A 146 546 36 HOH HOH . J 4 HOH A 147 547 1 HOH HOH . J 4 HOH A 148 548 168 HOH HOH . J 4 HOH A 149 549 208 HOH HOH . J 4 HOH A 150 550 123 HOH HOH . J 4 HOH A 151 551 245 HOH HOH . J 4 HOH A 152 552 57 HOH HOH . J 4 HOH A 153 553 232 HOH HOH . J 4 HOH A 154 554 112 HOH HOH . J 4 HOH A 155 555 80 HOH HOH . J 4 HOH A 156 556 16 HOH HOH . J 4 HOH A 157 557 198 HOH HOH . J 4 HOH A 158 558 127 HOH HOH . J 4 HOH A 159 559 238 HOH HOH . J 4 HOH A 160 560 161 HOH HOH . J 4 HOH A 161 561 44 HOH HOH . J 4 HOH A 162 562 6 HOH HOH . J 4 HOH A 163 563 73 HOH HOH . J 4 HOH A 164 564 97 HOH HOH . J 4 HOH A 165 565 173 HOH HOH . J 4 HOH A 166 566 109 HOH HOH . J 4 HOH A 167 567 104 HOH HOH . J 4 HOH A 168 568 231 HOH HOH . J 4 HOH A 169 569 235 HOH HOH . J 4 HOH A 170 570 66 HOH HOH . J 4 HOH A 171 571 147 HOH HOH . J 4 HOH A 172 572 148 HOH HOH . J 4 HOH A 173 573 216 HOH HOH . J 4 HOH A 174 574 182 HOH HOH . J 4 HOH A 175 575 215 HOH HOH . J 4 HOH A 176 576 247 HOH HOH . J 4 HOH A 177 577 19 HOH HOH . J 4 HOH A 178 578 87 HOH HOH . J 4 HOH A 179 579 197 HOH HOH . J 4 HOH A 180 580 213 HOH HOH . J 4 HOH A 181 581 82 HOH HOH . J 4 HOH A 182 582 69 HOH HOH . J 4 HOH A 183 583 59 HOH HOH . J 4 HOH A 184 584 88 HOH HOH . J 4 HOH A 185 585 70 HOH HOH . J 4 HOH A 186 586 63 HOH HOH . J 4 HOH A 187 587 192 HOH HOH . J 4 HOH A 188 588 17 HOH HOH . J 4 HOH A 189 589 38 HOH HOH . J 4 HOH A 190 590 49 HOH HOH . J 4 HOH A 191 591 153 HOH HOH . J 4 HOH A 192 592 62 HOH HOH . J 4 HOH A 193 593 84 HOH HOH . J 4 HOH A 194 594 31 HOH HOH . J 4 HOH A 195 595 48 HOH HOH . J 4 HOH A 196 596 108 HOH HOH . J 4 HOH A 197 597 20 HOH HOH . J 4 HOH A 198 598 56 HOH HOH . J 4 HOH A 199 599 237 HOH HOH . J 4 HOH A 200 600 35 HOH HOH . J 4 HOH A 201 601 46 HOH HOH . J 4 HOH A 202 602 37 HOH HOH . J 4 HOH A 203 603 67 HOH HOH . J 4 HOH A 204 604 210 HOH HOH . J 4 HOH A 205 605 53 HOH HOH . J 4 HOH A 206 606 111 HOH HOH . J 4 HOH A 207 607 71 HOH HOH . J 4 HOH A 208 608 74 HOH HOH . J 4 HOH A 209 609 79 HOH HOH . J 4 HOH A 210 610 14 HOH HOH . J 4 HOH A 211 611 26 HOH HOH . J 4 HOH A 212 612 42 HOH HOH . J 4 HOH A 213 613 100 HOH HOH . J 4 HOH A 214 614 95 HOH HOH . J 4 HOH A 215 615 65 HOH HOH . J 4 HOH A 216 616 105 HOH HOH . J 4 HOH A 217 617 96 HOH HOH . J 4 HOH A 218 618 72 HOH HOH . J 4 HOH A 219 619 159 HOH HOH . J 4 HOH A 220 620 60 HOH HOH . J 4 HOH A 221 621 239 HOH HOH . J 4 HOH A 222 622 230 HOH HOH . J 4 HOH A 223 623 94 HOH HOH . J 4 HOH A 224 624 99 HOH HOH . J 4 HOH A 225 625 32 HOH HOH . J 4 HOH A 226 626 33 HOH HOH . J 4 HOH A 227 627 113 HOH HOH . J 4 HOH A 228 628 218 HOH HOH . J 4 HOH A 229 629 22 HOH HOH . J 4 HOH A 230 630 115 HOH HOH . J 4 HOH A 231 631 34 HOH HOH . J 4 HOH A 232 632 21 HOH HOH . J 4 HOH A 233 633 120 HOH HOH . J 4 HOH A 234 634 43 HOH HOH . J 4 HOH A 235 635 81 HOH HOH . J 4 HOH A 236 636 236 HOH HOH . J 4 HOH A 237 637 124 HOH HOH . J 4 HOH A 238 638 102 HOH HOH . J 4 HOH A 239 639 77 HOH HOH . J 4 HOH A 240 640 196 HOH HOH . J 4 HOH A 241 641 64 HOH HOH . J 4 HOH A 242 642 86 HOH HOH . J 4 HOH A 243 643 2 HOH HOH . J 4 HOH A 244 644 51 HOH HOH . J 4 HOH A 245 645 116 HOH HOH . J 4 HOH A 246 646 114 HOH HOH . J 4 HOH A 247 647 224 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -1.937 -17.156 15.498 1 33.94 ? C1 GOL 307 A 1 HETATM 2 O O1 GOL . . . H 3 -1.861 -16.568 16.779 1 40.52 ? O1 GOL 307 A 1 HETATM 3 C C2 GOL . . . H 3 -3.469 -17.121 15.143 1 24.87 ? C2 GOL 307 A 1 HETATM 4 O O2 GOL . . . H 3 -4.107 -17.975 15.979 1 26.63 ? O2 GOL 307 A 1 HETATM 5 C C3 GOL . . . H 3 -3.807 -17.484 13.692 1 27.95 ? C3 GOL 307 A 1 HETATM 6 O O3 GOL . . . H 3 -3.092 -16.713 12.808 1 21.26 ? O3 GOL 307 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #