data_5EI4 # _model_server_result.job_id H9pLVqR6CXCvTqfZSy7Clw _model_server_result.datetime_utc '2024-10-19 03:47:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ei4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 5EI4 # _exptl.entry_id 5EI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 432.887 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-[(3-azanyl-1~{H}-1,2,4-triazol-5-yl)sulfanylmethyl]-3-[(4-chlorophenyl)methyl]-7-ethyl-purine-2,6-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EI4 _cell.length_a 37.353 _cell.length_b 44.069 _cell.length_c 78.272 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H17 Cl N8 O2 S' _chem_comp.formula_weight 432.887 _chem_comp.id 5NV _chem_comp.mon_nstd_flag . _chem_comp.name 8-[(3-azanyl-1~{H}-1,2,4-triazol-5-yl)sulfanylmethyl]-3-[(4-chlorophenyl)methyl]-7-ethyl-purine-2,6-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 CAL 5NV sing 1 n n CAM CAN 5NV doub 2 n y CAM CAL 5NV sing 3 n y CAN CAI 5NV sing 4 n y CAL CAK 5NV doub 5 n y O2 C2 5NV doub 6 n n CAI CAH 5NV sing 7 n n CAI CAJ 5NV doub 8 n y CAK CAJ 5NV sing 9 n y CAH N3 5NV sing 10 n n C2 N3 5NV sing 11 n n C2 N1 5NV sing 12 n n N3 C4 5NV sing 13 n n N1 C6 5NV sing 14 n n C4 N9 5NV sing 15 n y C4 C5 5NV doub 16 n y C6 C5 5NV sing 17 n n C6 O6 5NV doub 18 n n N9 C8 5NV doub 19 n y C5 N7 5NV sing 20 n y C8 N7 5NV sing 21 n y C8 CAV 5NV sing 22 n n N7 CAT 5NV sing 23 n n CAU CAT 5NV sing 24 n n CAV SAW 5NV sing 25 n n SAW CAX 5NV sing 26 n n NAY CAX 5NV sing 27 n y NAY NAZ 5NV sing 28 n y CAX NBB 5NV doub 29 n y NAZ CBA 5NV doub 30 n y NBB CBA 5NV sing 31 n y CBA NBC 5NV sing 32 n n N1 H1 5NV sing 33 n n CAJ H2 5NV sing 34 n n CAK H3 5NV sing 35 n n CAM H4 5NV sing 36 n n CAN H5 5NV sing 37 n n CAH H6 5NV sing 38 n n CAH H7 5NV sing 39 n n CAT H8 5NV sing 40 n n CAT H9 5NV sing 41 n n CAU H10 5NV sing 42 n n CAU H11 5NV sing 43 n n CAU H12 5NV sing 44 n n CAV H13 5NV sing 45 n n CAV H14 5NV sing 46 n n NBC H19 5NV sing 47 n n NBC H20 5NV sing 48 n n NAY H23 5NV sing 49 n n # _atom_sites.entry_id 5EI4 _atom_sites.fract_transf_matrix[1][1] 0.026772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 2 EDO EDO . C 3 5NV A 1 202 1 5NV DRG . D 4 HOH A 1 301 139 HOH HOH . D 4 HOH A 2 302 138 HOH HOH . D 4 HOH A 3 303 119 HOH HOH . D 4 HOH A 4 304 91 HOH HOH . D 4 HOH A 5 305 13 HOH HOH . D 4 HOH A 6 306 125 HOH HOH . D 4 HOH A 7 307 63 HOH HOH . D 4 HOH A 8 308 69 HOH HOH . D 4 HOH A 9 309 59 HOH HOH . D 4 HOH A 10 310 98 HOH HOH . D 4 HOH A 11 311 103 HOH HOH . D 4 HOH A 12 312 150 HOH HOH . D 4 HOH A 13 313 117 HOH HOH . D 4 HOH A 14 314 123 HOH HOH . D 4 HOH A 15 315 144 HOH HOH . D 4 HOH A 16 316 6 HOH HOH . D 4 HOH A 17 317 86 HOH HOH . D 4 HOH A 18 318 22 HOH HOH . D 4 HOH A 19 319 23 HOH HOH . D 4 HOH A 20 320 15 HOH HOH . D 4 HOH A 21 321 100 HOH HOH . D 4 HOH A 22 322 4 HOH HOH . D 4 HOH A 23 323 133 HOH HOH . D 4 HOH A 24 324 130 HOH HOH . D 4 HOH A 25 325 40 HOH HOH . D 4 HOH A 26 326 33 HOH HOH . D 4 HOH A 27 327 11 HOH HOH . D 4 HOH A 28 328 34 HOH HOH . D 4 HOH A 29 329 14 HOH HOH . D 4 HOH A 30 330 96 HOH HOH . D 4 HOH A 31 331 65 HOH HOH . D 4 HOH A 32 332 3 HOH HOH . D 4 HOH A 33 333 50 HOH HOH . D 4 HOH A 34 334 56 HOH HOH . D 4 HOH A 35 335 17 HOH HOH . D 4 HOH A 36 336 158 HOH HOH . D 4 HOH A 37 337 67 HOH HOH . D 4 HOH A 38 338 35 HOH HOH . D 4 HOH A 39 339 95 HOH HOH . D 4 HOH A 40 340 147 HOH HOH . D 4 HOH A 41 341 85 HOH HOH . D 4 HOH A 42 342 107 HOH HOH . D 4 HOH A 43 343 47 HOH HOH . D 4 HOH A 44 344 66 HOH HOH . D 4 HOH A 45 345 58 HOH HOH . D 4 HOH A 46 346 128 HOH HOH . D 4 HOH A 47 347 18 HOH HOH . D 4 HOH A 48 348 41 HOH HOH . D 4 HOH A 49 349 149 HOH HOH . D 4 HOH A 50 350 76 HOH HOH . D 4 HOH A 51 351 5 HOH HOH . D 4 HOH A 52 352 72 HOH HOH . D 4 HOH A 53 353 2 HOH HOH . D 4 HOH A 54 354 48 HOH HOH . D 4 HOH A 55 355 49 HOH HOH . D 4 HOH A 56 356 31 HOH HOH . D 4 HOH A 57 357 157 HOH HOH . D 4 HOH A 58 358 1 HOH HOH . D 4 HOH A 59 359 97 HOH HOH . D 4 HOH A 60 360 26 HOH HOH . D 4 HOH A 61 361 143 HOH HOH . D 4 HOH A 62 362 62 HOH HOH . D 4 HOH A 63 363 154 HOH HOH . D 4 HOH A 64 364 89 HOH HOH . D 4 HOH A 65 365 8 HOH HOH . D 4 HOH A 66 366 124 HOH HOH . D 4 HOH A 67 367 109 HOH HOH . D 4 HOH A 68 368 52 HOH HOH . D 4 HOH A 69 369 42 HOH HOH . D 4 HOH A 70 370 39 HOH HOH . D 4 HOH A 71 371 53 HOH HOH . D 4 HOH A 72 372 51 HOH HOH . D 4 HOH A 73 373 46 HOH HOH . D 4 HOH A 74 374 44 HOH HOH . D 4 HOH A 75 375 24 HOH HOH . D 4 HOH A 76 376 71 HOH HOH . D 4 HOH A 77 377 30 HOH HOH . D 4 HOH A 78 378 10 HOH HOH . D 4 HOH A 79 379 64 HOH HOH . D 4 HOH A 80 380 60 HOH HOH . D 4 HOH A 81 381 20 HOH HOH . D 4 HOH A 82 382 36 HOH HOH . D 4 HOH A 83 383 70 HOH HOH . D 4 HOH A 84 384 145 HOH HOH . D 4 HOH A 85 385 148 HOH HOH . D 4 HOH A 86 386 90 HOH HOH . D 4 HOH A 87 387 29 HOH HOH . D 4 HOH A 88 388 19 HOH HOH . D 4 HOH A 89 389 131 HOH HOH . D 4 HOH A 90 390 55 HOH HOH . D 4 HOH A 91 391 54 HOH HOH . D 4 HOH A 92 392 92 HOH HOH . D 4 HOH A 93 393 127 HOH HOH . D 4 HOH A 94 394 113 HOH HOH . D 4 HOH A 95 395 146 HOH HOH . D 4 HOH A 96 396 16 HOH HOH . D 4 HOH A 97 397 106 HOH HOH . D 4 HOH A 98 398 75 HOH HOH . D 4 HOH A 99 399 115 HOH HOH . D 4 HOH A 100 400 38 HOH HOH . D 4 HOH A 101 401 140 HOH HOH . D 4 HOH A 102 402 116 HOH HOH . D 4 HOH A 103 403 9 HOH HOH . D 4 HOH A 104 404 27 HOH HOH . D 4 HOH A 105 405 12 HOH HOH . D 4 HOH A 106 406 61 HOH HOH . D 4 HOH A 107 407 81 HOH HOH . D 4 HOH A 108 408 105 HOH HOH . D 4 HOH A 109 409 21 HOH HOH . D 4 HOH A 110 410 162 HOH HOH . D 4 HOH A 111 411 7 HOH HOH . D 4 HOH A 112 412 160 HOH HOH . D 4 HOH A 113 413 161 HOH HOH . D 4 HOH A 114 414 120 HOH HOH . D 4 HOH A 115 415 68 HOH HOH . D 4 HOH A 116 416 88 HOH HOH . D 4 HOH A 117 417 152 HOH HOH . D 4 HOH A 118 418 28 HOH HOH . D 4 HOH A 119 419 104 HOH HOH . D 4 HOH A 120 420 156 HOH HOH . D 4 HOH A 121 421 57 HOH HOH . D 4 HOH A 122 422 135 HOH HOH . D 4 HOH A 123 423 164 HOH HOH . D 4 HOH A 124 424 74 HOH HOH . D 4 HOH A 125 425 25 HOH HOH . D 4 HOH A 126 426 45 HOH HOH . D 4 HOH A 127 427 112 HOH HOH . D 4 HOH A 128 428 82 HOH HOH . D 4 HOH A 129 429 142 HOH HOH . D 4 HOH A 130 430 163 HOH HOH . D 4 HOH A 131 431 37 HOH HOH . D 4 HOH A 132 432 141 HOH HOH . D 4 HOH A 133 433 43 HOH HOH . D 4 HOH A 134 434 122 HOH HOH . D 4 HOH A 135 435 155 HOH HOH . D 4 HOH A 136 436 136 HOH HOH . D 4 HOH A 137 437 110 HOH HOH . D 4 HOH A 138 438 132 HOH HOH . D 4 HOH A 139 439 101 HOH HOH . D 4 HOH A 140 440 153 HOH HOH . D 4 HOH A 141 441 87 HOH HOH . D 4 HOH A 142 442 73 HOH HOH . D 4 HOH A 143 443 121 HOH HOH . D 4 HOH A 144 444 78 HOH HOH . D 4 HOH A 145 445 137 HOH HOH . D 4 HOH A 146 446 129 HOH HOH . D 4 HOH A 147 447 77 HOH HOH . D 4 HOH A 148 448 80 HOH HOH . D 4 HOH A 149 449 84 HOH HOH . D 4 HOH A 150 450 126 HOH HOH . D 4 HOH A 151 451 118 HOH HOH . D 4 HOH A 152 452 32 HOH HOH . D 4 HOH A 153 453 114 HOH HOH . D 4 HOH A 154 454 99 HOH HOH . D 4 HOH A 155 455 151 HOH HOH . D 4 HOH A 156 456 93 HOH HOH . D 4 HOH A 157 457 102 HOH HOH . D 4 HOH A 158 458 108 HOH HOH . D 4 HOH A 159 459 111 HOH HOH . D 4 HOH A 160 460 159 HOH HOH . D 4 HOH A 161 461 83 HOH HOH . D 4 HOH A 162 462 94 HOH HOH . D 4 HOH A 163 463 79 HOH HOH . D 4 HOH A 164 464 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5NV . . . C 3 25.29 50.797 -1.116 0.5 8.56 ? C4 5NV 202 A 1 HETATM 2 C C5 5NV . . . C 3 24.479 49.984 -0.335 0.5 8.62 ? C5 5NV 202 A 1 HETATM 3 C C6 5NV . . . C 3 23.233 49.606 -0.782 0.5 8.14 ? C6 5NV 202 A 1 HETATM 4 C C8 5NV . . . C 3 26.409 50.335 0.673 0.5 9.44 ? C8 5NV 202 A 1 HETATM 5 N N1 5NV . . . C 3 22.859 50.181 -2.034 0.5 9.14 ? N1 5NV 202 A 1 HETATM 6 N N3 5NV . . . C 3 24.861 51.316 -2.289 0.5 9.22 ? N3 5NV 202 A 1 HETATM 7 C CAJ 5NV . . . C 3 27.954 50.837 -3.044 0.5 9.05 ? CAJ 5NV 202 A 1 HETATM 8 C CAK 5NV . . . C 3 28.835 49.931 -3.665 0.5 10.66 ? CAK 5NV 202 A 1 HETATM 9 C CAL 5NV . . . C 3 28.597 49.309 -4.892 0.5 10.66 ? CAL 5NV 202 A 1 HETATM 10 CL CL1 5NV . . . C 3 29.659 48.298 -5.635 0.5 13.56 ? CL1 5NV 202 A 1 HETATM 11 C CAM 5NV . . . C 3 27.426 49.609 -5.52 0.5 11.6 ? CAM 5NV 202 A 1 HETATM 12 C CAN 5NV . . . C 3 26.518 50.494 -4.915 0.5 11.15 ? CAN 5NV 202 A 1 HETATM 13 C CAI 5NV . . . C 3 26.781 51.185 -3.704 0.5 9.53 ? CAI 5NV 202 A 1 HETATM 14 C CAH 5NV . . . C 3 25.797 52.165 -3.098 0.5 9.73 ? CAH 5NV 202 A 1 HETATM 15 C C2 5NV . . . C 3 23.612 50.998 -2.783 0.5 9.22 ? C2 5NV 202 A 1 HETATM 16 O O2 5NV . . . C 3 23.234 51.403 -3.883 0.5 10.58 ? O2 5NV 202 A 1 HETATM 17 O O6 5NV . . . C 3 22.384 48.811 -0.282 0.5 6.93 ? O6 5NV 202 A 1 HETATM 18 N N7 5NV . . . C 3 25.227 49.647 0.749 0.5 8.55 ? N7 5NV 202 A 1 HETATM 19 C CAT 5NV . . . C 3 24.887 48.765 1.831 0.5 9.65 ? CAT 5NV 202 A 1 HETATM 20 C CAU 5NV . . . C 3 25.031 47.409 1.327 0.5 7.53 ? CAU 5NV 202 A 1 HETATM 21 N N9 5NV . . . C 3 26.447 51.044 -0.478 0.5 9.49 ? N9 5NV 202 A 1 HETATM 22 C CAV 5NV . . . C 3 27.465 50.268 1.89 0.5 7.33 ? CAV 5NV 202 A 1 HETATM 23 S SAW 5NV . . . C 3 26.987 51.578 2.954 0.5 11.49 ? SAW 5NV 202 A 1 HETATM 24 C CAX 5NV . . . C 3 28.53 51.961 3.526 0.5 10.52 ? CAX 5NV 202 A 1 HETATM 25 N NBB 5NV . . . C 3 28.62 52.46 4.684 0.5 9.28 ? NBB 5NV 202 A 1 HETATM 26 C CBA 5NV . . . C 3 29.951 52.847 4.79 0.5 12.49 ? CBA 5NV 202 A 1 HETATM 27 N NBC 5NV . . . C 3 30.595 53.485 5.831 0.5 14.15 ? NBC 5NV 202 A 1 HETATM 28 N NAZ 5NV . . . C 3 30.652 52.329 3.8 0.5 12.11 ? NAZ 5NV 202 A 1 HETATM 29 N NAY 5NV . . . C 3 29.744 51.761 2.977 0.5 11.98 ? NAY 5NV 202 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #