data_5EI8 # _model_server_result.job_id czA9TK7NVIXEQQIQd5zz3g _model_server_result.datetime_utc '2024-11-18 09:53:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ei8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":903}' # _entry.id 5EI8 # _exptl.entry_id 5EI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EI8 _cell.length_a 70.003 _cell.length_b 101.983 _cell.length_c 110.868 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 138 n n S C1 DMS sing 139 n n S C2 DMS sing 140 n n C1 H11 DMS sing 141 n n C1 H12 DMS sing 142 n n C1 H13 DMS sing 143 n n C2 H21 DMS sing 144 n n C2 H22 DMS sing 145 n n C2 H23 DMS sing 146 n n # _atom_sites.entry_id 5EI8 _atom_sites.fract_transf_matrix[1][1] 0.014285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5OE A 1 901 1 5OE 927 . C 3 DMS A 1 902 1 DMS DMS . D 3 DMS A 1 903 2 DMS DMS . E 3 DMS A 1 904 3 DMS DMS . F 4 HOH A 1 1001 34 HOH HOH . F 4 HOH A 2 1002 3 HOH HOH . F 4 HOH A 3 1003 22 HOH HOH . F 4 HOH A 4 1004 1 HOH HOH . F 4 HOH A 5 1005 13 HOH HOH . F 4 HOH A 6 1006 28 HOH HOH . F 4 HOH A 7 1007 8 HOH HOH . F 4 HOH A 8 1008 2 HOH HOH . F 4 HOH A 9 1009 16 HOH HOH . F 4 HOH A 10 1010 10 HOH HOH . F 4 HOH A 11 1011 32 HOH HOH . F 4 HOH A 12 1012 11 HOH HOH . F 4 HOH A 13 1013 23 HOH HOH . F 4 HOH A 14 1014 35 HOH HOH . F 4 HOH A 15 1015 33 HOH HOH . F 4 HOH A 16 1016 36 HOH HOH . F 4 HOH A 17 1017 40 HOH HOH . F 4 HOH A 18 1018 6 HOH HOH . F 4 HOH A 19 1019 20 HOH HOH . F 4 HOH A 20 1020 15 HOH HOH . F 4 HOH A 21 1021 19 HOH HOH . F 4 HOH A 22 1022 7 HOH HOH . F 4 HOH A 23 1023 5 HOH HOH . F 4 HOH A 24 1024 14 HOH HOH . F 4 HOH A 25 1025 41 HOH HOH . F 4 HOH A 26 1026 37 HOH HOH . F 4 HOH A 27 1027 17 HOH HOH . F 4 HOH A 28 1028 9 HOH HOH . F 4 HOH A 29 1029 38 HOH HOH . F 4 HOH A 30 1030 12 HOH HOH . F 4 HOH A 31 1031 39 HOH HOH . F 4 HOH A 32 1032 30 HOH HOH . F 4 HOH A 33 1033 29 HOH HOH . F 4 HOH A 34 1034 18 HOH HOH . F 4 HOH A 35 1035 31 HOH HOH . F 4 HOH A 36 1036 24 HOH HOH . F 4 HOH A 37 1037 25 HOH HOH . F 4 HOH A 38 1038 27 HOH HOH . F 4 HOH A 39 1039 21 HOH HOH . F 4 HOH A 40 1040 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 5.91 -18.836 -8.728 1 110.79 ? S DMS 903 A 1 HETATM 2 O O DMS . . . D 3 6.064 -19.02 -7.268 1 110.38 ? O DMS 903 A 1 HETATM 3 C C1 DMS . . . D 3 4.518 -17.759 -8.944 1 110.09 ? C1 DMS 903 A 1 HETATM 4 C C2 DMS . . . D 3 7.223 -17.752 -9.223 1 110 ? C2 DMS 903 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #