data_5EIA # _model_server_result.job_id dYxouXEwwpHJ61yMO9AEiQ _model_server_result.datetime_utc '2024-10-13 04:19:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 5EIA # _exptl.entry_id 5EIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EIA _cell.length_a 79.47 _cell.length_b 112.52 _cell.length_c 226.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 69 A CYS 69 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 257 A CYS 257 1_555 A SG CYS 272 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf3 A SG CYS 409 A CYS 409 1_555 A SG CYS 529 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 69 B CYS 69 1_555 B SG CYS 96 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 B SG CYS 257 B CYS 257 1_555 B SG CYS 272 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf6 B SG CYS 409 B CYS 409 1_555 B SG CYS 529 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? covale ? covale1 A ND2 ASN 350 A ASN 350 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 464 A ASN 464 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 B ND2 ASN 350 B ASN 350 1_555 G C1 NAG . B NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B ND2 ASN 464 B ASN 464 1_555 H C1 NAG . B NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 336 n n C1 O1 NAG sing 337 n n C1 O5 NAG sing 338 n n C1 H1 NAG sing 339 n n C2 C3 NAG sing 340 n n C2 N2 NAG sing 341 n n C2 H2 NAG sing 342 n n C3 C4 NAG sing 343 n n C3 O3 NAG sing 344 n n C3 H3 NAG sing 345 n n C4 C5 NAG sing 346 n n C4 O4 NAG sing 347 n n C4 H4 NAG sing 348 n n C5 C6 NAG sing 349 n n C5 O5 NAG sing 350 n n C5 H5 NAG sing 351 n n C6 O6 NAG sing 352 n n C6 H61 NAG sing 353 n n C6 H62 NAG sing 354 n n C7 C8 NAG sing 355 n n C7 N2 NAG sing 356 n n C7 O7 NAG doub 357 n n C8 H81 NAG sing 358 n n C8 H82 NAG sing 359 n n C8 H83 NAG sing 360 n n N2 HN2 NAG sing 361 n n O1 HO1 NAG sing 362 n n O3 HO3 NAG sing 363 n n O4 HO4 NAG sing 364 n n O6 HO6 NAG sing 365 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5EIA _atom_sites.fract_transf_matrix[1][1] 0.012583 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 601 601 NAG NAG . D 2 NAG A 1 602 701 NAG NAG . E 3 5O2 A 1 603 901 5O2 TZ5 . F 4 PG4 A 1 604 501 PG4 PG4 . G 2 NAG B 1 601 602 NAG NAG . H 2 NAG B 1 602 702 NAG NAG . I 3 5O2 B 1 603 951 5O2 TZ5 . J 5 HOH A 1 701 63 HOH HOH . J 5 HOH A 2 702 41 HOH HOH . J 5 HOH A 3 703 4 HOH HOH . J 5 HOH A 4 704 117 HOH HOH . J 5 HOH A 5 705 62 HOH HOH . J 5 HOH A 6 706 95 HOH HOH . J 5 HOH A 7 707 38 HOH HOH . J 5 HOH A 8 708 124 HOH HOH . J 5 HOH A 9 709 45 HOH HOH . J 5 HOH A 10 710 43 HOH HOH . J 5 HOH A 11 711 11 HOH HOH . J 5 HOH A 12 712 12 HOH HOH . J 5 HOH A 13 713 122 HOH HOH . J 5 HOH A 14 714 123 HOH HOH . J 5 HOH A 15 715 44 HOH HOH . J 5 HOH A 16 716 80 HOH HOH . J 5 HOH A 17 717 125 HOH HOH . J 5 HOH A 18 718 151 HOH HOH . J 5 HOH A 19 719 153 HOH HOH . J 5 HOH A 20 720 178 HOH HOH . J 5 HOH A 21 721 109 HOH HOH . J 5 HOH A 22 722 47 HOH HOH . J 5 HOH A 23 723 121 HOH HOH . J 5 HOH A 24 724 16 HOH HOH . J 5 HOH A 25 725 137 HOH HOH . J 5 HOH A 26 726 88 HOH HOH . J 5 HOH A 27 727 172 HOH HOH . J 5 HOH A 28 728 152 HOH HOH . J 5 HOH A 29 729 120 HOH HOH . J 5 HOH A 30 730 84 HOH HOH . J 5 HOH A 31 731 81 HOH HOH . J 5 HOH A 32 732 87 HOH HOH . J 5 HOH A 33 733 64 HOH HOH . J 5 HOH A 34 734 92 HOH HOH . J 5 HOH A 35 735 46 HOH HOH . J 5 HOH A 36 736 15 HOH HOH . J 5 HOH A 37 737 179 HOH HOH . J 5 HOH A 38 738 67 HOH HOH . J 5 HOH A 39 739 143 HOH HOH . J 5 HOH A 40 740 68 HOH HOH . J 5 HOH A 41 741 65 HOH HOH . J 5 HOH A 42 742 167 HOH HOH . J 5 HOH A 43 743 108 HOH HOH . J 5 HOH A 44 744 58 HOH HOH . J 5 HOH A 45 745 8 HOH HOH . J 5 HOH A 46 746 173 HOH HOH . J 5 HOH A 47 747 93 HOH HOH . J 5 HOH A 48 748 127 HOH HOH . J 5 HOH A 49 749 126 HOH HOH . J 5 HOH A 50 750 133 HOH HOH . J 5 HOH A 51 751 183 HOH HOH . J 5 HOH A 52 752 139 HOH HOH . J 5 HOH A 53 753 176 HOH HOH . J 5 HOH A 54 754 128 HOH HOH . J 5 HOH A 55 755 19 HOH HOH . J 5 HOH A 56 756 182 HOH HOH . J 5 HOH A 57 757 146 HOH HOH . J 5 HOH A 58 758 136 HOH HOH . J 5 HOH A 59 759 78 HOH HOH . J 5 HOH A 60 760 138 HOH HOH . J 5 HOH A 61 761 79 HOH HOH . J 5 HOH A 62 762 5 HOH HOH . J 5 HOH A 63 763 154 HOH HOH . J 5 HOH A 64 764 74 HOH HOH . J 5 HOH A 65 765 56 HOH HOH . J 5 HOH A 66 766 150 HOH HOH . J 5 HOH A 67 767 40 HOH HOH . J 5 HOH A 68 768 69 HOH HOH . J 5 HOH A 69 769 3 HOH HOH . J 5 HOH A 70 770 175 HOH HOH . J 5 HOH A 71 771 131 HOH HOH . J 5 HOH A 72 772 89 HOH HOH . J 5 HOH A 73 773 96 HOH HOH . J 5 HOH A 74 774 71 HOH HOH . J 5 HOH A 75 775 94 HOH HOH . J 5 HOH A 76 776 110 HOH HOH . J 5 HOH A 77 777 118 HOH HOH . J 5 HOH A 78 778 141 HOH HOH . J 5 HOH A 79 779 132 HOH HOH . J 5 HOH A 80 780 194 HOH HOH . J 5 HOH A 81 781 57 HOH HOH . J 5 HOH A 82 782 97 HOH HOH . J 5 HOH A 83 783 189 HOH HOH . J 5 HOH A 84 784 13 HOH HOH . J 5 HOH A 85 785 77 HOH HOH . J 5 HOH A 86 786 170 HOH HOH . J 5 HOH A 87 787 82 HOH HOH . J 5 HOH A 88 788 145 HOH HOH . J 5 HOH A 89 789 140 HOH HOH . J 5 HOH A 90 790 174 HOH HOH . J 5 HOH A 91 791 31 HOH HOH . J 5 HOH A 92 792 193 HOH HOH . J 5 HOH A 93 793 135 HOH HOH . J 5 HOH A 94 794 180 HOH HOH . J 5 HOH A 95 795 98 HOH HOH . J 5 HOH A 96 796 32 HOH HOH . J 5 HOH A 97 797 148 HOH HOH . J 5 HOH A 98 798 73 HOH HOH . J 5 HOH A 99 799 22 HOH HOH . J 5 HOH A 100 800 188 HOH HOH . J 5 HOH A 101 801 149 HOH HOH . J 5 HOH A 102 802 181 HOH HOH . J 5 HOH A 103 803 155 HOH HOH . J 5 HOH A 104 804 156 HOH HOH . J 5 HOH A 105 805 187 HOH HOH . J 5 HOH A 106 806 184 HOH HOH . K 5 HOH B 1 701 99 HOH HOH . K 5 HOH B 2 702 42 HOH HOH . K 5 HOH B 3 703 66 HOH HOH . K 5 HOH B 4 704 134 HOH HOH . K 5 HOH B 5 705 53 HOH HOH . K 5 HOH B 6 706 50 HOH HOH . K 5 HOH B 7 707 60 HOH HOH . K 5 HOH B 8 708 83 HOH HOH . K 5 HOH B 9 709 101 HOH HOH . K 5 HOH B 10 710 130 HOH HOH . K 5 HOH B 11 711 52 HOH HOH . K 5 HOH B 12 712 115 HOH HOH . K 5 HOH B 13 713 72 HOH HOH . K 5 HOH B 14 714 29 HOH HOH . K 5 HOH B 15 715 191 HOH HOH . K 5 HOH B 16 716 104 HOH HOH . K 5 HOH B 17 717 24 HOH HOH . K 5 HOH B 18 718 61 HOH HOH . K 5 HOH B 19 719 48 HOH HOH . K 5 HOH B 20 720 100 HOH HOH . K 5 HOH B 21 721 55 HOH HOH . K 5 HOH B 22 722 75 HOH HOH . K 5 HOH B 23 723 107 HOH HOH . K 5 HOH B 24 724 142 HOH HOH . K 5 HOH B 25 725 6 HOH HOH . K 5 HOH B 26 726 157 HOH HOH . K 5 HOH B 27 727 103 HOH HOH . K 5 HOH B 28 728 129 HOH HOH . K 5 HOH B 29 729 114 HOH HOH . K 5 HOH B 30 730 36 HOH HOH . K 5 HOH B 31 731 190 HOH HOH . K 5 HOH B 32 732 76 HOH HOH . K 5 HOH B 33 733 119 HOH HOH . K 5 HOH B 34 734 144 HOH HOH . K 5 HOH B 35 735 105 HOH HOH . K 5 HOH B 36 736 39 HOH HOH . K 5 HOH B 37 737 171 HOH HOH . K 5 HOH B 38 738 160 HOH HOH . K 5 HOH B 39 739 14 HOH HOH . K 5 HOH B 40 740 158 HOH HOH . K 5 HOH B 41 741 186 HOH HOH . K 5 HOH B 42 742 106 HOH HOH . K 5 HOH B 43 743 18 HOH HOH . K 5 HOH B 44 744 85 HOH HOH . K 5 HOH B 45 745 51 HOH HOH . K 5 HOH B 46 746 195 HOH HOH . K 5 HOH B 47 747 25 HOH HOH . K 5 HOH B 48 748 59 HOH HOH . K 5 HOH B 49 749 192 HOH HOH . K 5 HOH B 50 750 177 HOH HOH . K 5 HOH B 51 751 185 HOH HOH . K 5 HOH B 52 752 90 HOH HOH . K 5 HOH B 53 753 10 HOH HOH . K 5 HOH B 54 754 86 HOH HOH . K 5 HOH B 55 755 168 HOH HOH . K 5 HOH B 56 756 147 HOH HOH . K 5 HOH B 57 757 169 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 25.468 35.806 -0.667 1 91.57 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . C 2 25.554 35.864 -2.193 1 94.58 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . C 2 26.906 35.275 -2.6 1 94.26 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . C 2 28.066 36.014 -1.93 1 94.75 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . C 2 27.873 36.177 -0.419 1 93.16 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . C 2 28.811 37.22 0.184 1 90.57 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . C 2 23.308 35.697 -3.257 1 98.14 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . C 2 22.291 34.75 -3.822 1 97.76 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . C 2 24.465 35.134 -2.829 1 97.59 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . C 2 27.041 35.388 -4.014 1 93.97 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . C 2 29.279 35.314 -2.201 1 96.36 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . C 2 26.528 36.611 -0.128 1 93.99 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . C 2 28.443 37.655 1.499 1 88.04 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . C 2 23.091 36.907 -3.172 1 97.14 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #