data_5EIK # _model_server_result.job_id RFYJRT-vlMuSR2CZcUJjfQ _model_server_result.datetime_utc '2024-11-26 21:04:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":311}' # _entry.id 5EIK # _exptl.entry_id 5EIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.562 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description DECYL-BETA-D-MALTOPYRANOSIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5EIK _cell.length_a 126.34 _cell.length_b 126.34 _cell.length_c 135.57 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CE1 TYR 21 A TYR 21 1_555 K O6 DMU . A DMU 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.53 ? metalc ? metalc1 D MG MG . A MG 303 1_555 N O HOH . A HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc2 D MG MG . A MG 303 1_555 N O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc3 D MG MG . A MG 303 1_555 N O HOH . A HOH 480 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'C22 H42 O11' _chem_comp.formula_weight 482.562 _chem_comp.id DMU _chem_comp.mon_nstd_flag . _chem_comp.name DECYL-BETA-D-MALTOPYRANOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms DECYLMALTOSIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C40 C37 DMU sing 220 n n C40 C43 DMU sing 221 n n C37 C34 DMU sing 222 n n C34 C31 DMU sing 223 n n C31 C28 DMU sing 224 n n C28 C25 DMU sing 225 n n C22 C25 DMU sing 226 n n C22 C19 DMU sing 227 n n O61 C57 DMU sing 228 n n O4 C7 DMU sing 229 n n C18 C19 DMU sing 230 n n C18 O16 DMU sing 231 n n O5 C6 DMU sing 232 n n O5 C4 DMU sing 233 n n C57 C4 DMU sing 234 n n C6 O16 DMU sing 235 n n C6 C1 DMU sing 236 n n C7 C5 DMU sing 237 n n C7 C8 DMU sing 238 n n C4 C3 DMU sing 239 n n O1 C10 DMU sing 240 n n O1 C9 DMU sing 241 n n C10 C5 DMU sing 242 n n C10 O7 DMU sing 243 n n C5 O3 DMU sing 244 n n O49 C1 DMU sing 245 n n C8 C9 DMU sing 246 n n C8 O2 DMU sing 247 n n C1 C2 DMU sing 248 n n C11 C9 DMU sing 249 n n C11 O6 DMU sing 250 n n C3 O7 DMU sing 251 n n C3 C2 DMU sing 252 n n C2 O55 DMU sing 253 n n C1 H1 DMU sing 254 n n C2 H2 DMU sing 255 n n C3 H3 DMU sing 256 n n C4 H4 DMU sing 257 n n C6 H5 DMU sing 258 n n C18 H6 DMU sing 259 n n C18 H7 DMU sing 260 n n C19 H8 DMU sing 261 n n C19 H9 DMU sing 262 n n C22 H10 DMU sing 263 n n C22 H11 DMU sing 264 n n C25 H12 DMU sing 265 n n C25 H13 DMU sing 266 n n C28 H14 DMU sing 267 n n C28 H15 DMU sing 268 n n C31 H16 DMU sing 269 n n C31 H17 DMU sing 270 n n C34 H18 DMU sing 271 n n C34 H19 DMU sing 272 n n C37 H20 DMU sing 273 n n C37 H21 DMU sing 274 n n C40 H22 DMU sing 275 n n C40 H23 DMU sing 276 n n C43 H24 DMU sing 277 n n C43 H25 DMU sing 278 n n C43 H26 DMU sing 279 n n O49 H27 DMU sing 280 n n O55 H28 DMU sing 281 n n C57 H29 DMU sing 282 n n C57 H30 DMU sing 283 n n O61 H31 DMU sing 284 n n C5 H32 DMU sing 285 n n C7 H33 DMU sing 286 n n C8 H34 DMU sing 287 n n C9 H35 DMU sing 288 n n C10 H36 DMU sing 289 n n O2 H37 DMU sing 290 n n O3 H38 DMU sing 291 n n O4 H39 DMU sing 292 n n C11 H40 DMU sing 293 n n C11 H41 DMU sing 294 n n O6 H42 DMU sing 295 n n # _atom_sites.entry_id 5EIK _atom_sites.fract_transf_matrix[1][1] 0.007915 _atom_sites.fract_transf_matrix[1][2] 0.00457 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007376 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PT5 A 1 301 185 PT5 PIO . C 3 CPL A 1 302 640 CPL CPL . D 4 MG A 1 303 1 MG MG2 . E 5 ACT A 1 304 1 ACT ACT . F 5 ACT A 1 305 2 ACT ACT . G 5 ACT A 1 306 3 ACT ACT . H 5 ACT A 1 307 4 ACT ACT . I 5 ACT A 1 308 5 ACT ACT . J 6 DMU A 1 309 1 DMU DMU . K 6 DMU A 1 310 2 DMU DMU . L 6 DMU A 1 311 3 DMU DMU . M 6 DMU A 1 312 4 DMU DMU . N 7 HOH A 1 401 4 HOH WAT . N 7 HOH A 2 402 22 HOH WAT . N 7 HOH A 3 403 50 HOH WAT . N 7 HOH A 4 404 52 HOH WAT . N 7 HOH A 5 405 23 HOH WAT . N 7 HOH A 6 406 31 HOH WAT . N 7 HOH A 7 407 99 HOH WAT . N 7 HOH A 8 408 110 HOH WAT . N 7 HOH A 9 409 69 HOH WAT . N 7 HOH A 10 410 103 HOH WAT . N 7 HOH A 11 411 90 HOH WAT . N 7 HOH A 12 412 108 HOH WAT . N 7 HOH A 13 413 98 HOH WAT . N 7 HOH A 14 414 13 HOH WAT . N 7 HOH A 15 415 101 HOH WAT . N 7 HOH A 16 416 73 HOH WAT . N 7 HOH A 17 417 32 HOH WAT . N 7 HOH A 18 418 20 HOH WAT . N 7 HOH A 19 419 85 HOH WAT . N 7 HOH A 20 420 55 HOH WAT . N 7 HOH A 21 421 19 HOH WAT . N 7 HOH A 22 422 18 HOH WAT . N 7 HOH A 23 423 111 HOH WAT . N 7 HOH A 24 424 42 HOH WAT . N 7 HOH A 25 425 41 HOH WAT . N 7 HOH A 26 426 84 HOH WAT . N 7 HOH A 27 427 47 HOH WAT . N 7 HOH A 28 428 5 HOH WAT . N 7 HOH A 29 429 17 HOH WAT . N 7 HOH A 30 430 9 HOH WAT . N 7 HOH A 31 431 45 HOH WAT . N 7 HOH A 32 432 125 HOH HOH . N 7 HOH A 33 433 112 HOH WAT . N 7 HOH A 34 434 100 HOH WAT . N 7 HOH A 35 435 115 HOH WAT . N 7 HOH A 36 436 10 HOH WAT . N 7 HOH A 37 437 104 HOH WAT . N 7 HOH A 38 438 87 HOH WAT . N 7 HOH A 39 439 86 HOH WAT . N 7 HOH A 40 440 119 HOH WAT . N 7 HOH A 41 441 53 HOH WAT . N 7 HOH A 42 442 83 HOH WAT . N 7 HOH A 43 443 93 HOH WAT . N 7 HOH A 44 444 63 HOH WAT . N 7 HOH A 45 445 81 HOH WAT . N 7 HOH A 46 446 8 HOH WAT . N 7 HOH A 47 447 114 HOH WAT . N 7 HOH A 48 448 6 HOH WAT . N 7 HOH A 49 449 91 HOH WAT . N 7 HOH A 50 450 109 HOH WAT . N 7 HOH A 51 451 11 HOH WAT . N 7 HOH A 52 452 51 HOH WAT . N 7 HOH A 53 453 2 HOH WAT . N 7 HOH A 54 454 97 HOH WAT . N 7 HOH A 55 455 92 HOH WAT . N 7 HOH A 56 456 116 HOH WAT . N 7 HOH A 57 457 76 HOH WAT . N 7 HOH A 58 458 89 HOH WAT . N 7 HOH A 59 459 106 HOH WAT . N 7 HOH A 60 460 46 HOH WAT . N 7 HOH A 61 461 113 HOH WAT . N 7 HOH A 62 462 14 HOH WAT . N 7 HOH A 63 463 105 HOH WAT . N 7 HOH A 64 464 1 HOH WAT . N 7 HOH A 65 465 68 HOH WAT . N 7 HOH A 66 466 123 HOH WAT . N 7 HOH A 67 467 67 HOH WAT . N 7 HOH A 68 468 77 HOH WAT . N 7 HOH A 69 469 34 HOH WAT . N 7 HOH A 70 470 128 HOH HOH . N 7 HOH A 71 471 117 HOH WAT . N 7 HOH A 72 472 96 HOH WAT . N 7 HOH A 73 473 70 HOH WAT . N 7 HOH A 74 474 126 HOH HOH . N 7 HOH A 75 475 120 HOH WAT . N 7 HOH A 76 476 7 HOH WAT . N 7 HOH A 77 477 121 HOH WAT . N 7 HOH A 78 478 79 HOH WAT . N 7 HOH A 79 479 95 HOH WAT . N 7 HOH A 80 480 124 HOH HOH . N 7 HOH A 81 481 58 HOH WAT . N 7 HOH A 82 482 80 HOH WAT . N 7 HOH A 83 483 122 HOH WAT . N 7 HOH A 84 484 48 HOH WAT . N 7 HOH A 85 485 72 HOH WAT . N 7 HOH A 86 486 94 HOH WAT . N 7 HOH A 87 487 75 HOH WAT . N 7 HOH A 88 488 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DMU . . . L 6 -26.747 30.678 33.341 1 112.1 ? C1 DMU 311 A 1 HETATM 2 C C2 DMU . . . L 6 -26.947 30.844 34.873 1 115.31 ? C2 DMU 311 A 1 HETATM 3 C C3 DMU . . . L 6 -28.424 30.464 35.282 1 115.58 ? C3 DMU 311 A 1 HETATM 4 C C4 DMU . . . L 6 -28.799 29.105 34.642 1 116.75 ? C4 DMU 311 A 1 HETATM 5 O O5 DMU . . . L 6 -28.671 29.171 33.21 1 107.96 ? O5 DMU 311 A 1 HETATM 6 C C6 DMU . . . L 6 -27.269 29.292 32.888 1 105.15 ? C6 DMU 311 A 1 HETATM 7 O O7 DMU . . . L 6 -28.549 30.326 36.722 1 117.79 ? O7 DMU 311 A 1 HETATM 8 O O16 DMU . . . L 6 -27.086 29.158 31.471 1 90.58 ? O16 DMU 311 A 1 HETATM 9 C C18 DMU . . . L 6 -26.902 27.751 31.197 1 86.56 ? C18 DMU 311 A 1 HETATM 10 C C19 DMU . . . L 6 -26.61 27.585 29.703 1 83.56 ? C19 DMU 311 A 1 HETATM 11 C C22 DMU . . . L 6 -26.469 26.105 29.325 1 72.6 ? C22 DMU 311 A 1 HETATM 12 C C25 DMU . . . L 6 -25.672 26.038 28.019 1 76.92 ? C25 DMU 311 A 1 HETATM 13 C C28 DMU . . . L 6 -26.013 24.754 27.27 1 72.87 ? C28 DMU 311 A 1 HETATM 14 C C31 DMU . . . L 6 -25.803 24.977 25.766 1 78.85 ? C31 DMU 311 A 1 HETATM 15 C C34 DMU . . . L 6 -24.64 24.103 25.265 1 80.38 ? C34 DMU 311 A 1 HETATM 16 C C37 DMU . . . L 6 -23.579 24.998 24.618 1 78.35 ? C37 DMU 311 A 1 HETATM 17 C C40 DMU . . . L 6 -23.328 24.565 23.166 1 74.76 ? C40 DMU 311 A 1 HETATM 18 C C43 DMU . . . L 6 -21.969 23.87 23.074 1 65.26 ? C43 DMU 311 A 1 HETATM 19 O O49 DMU . . . L 6 -25.333 30.781 33.027 1 114.35 ? O49 DMU 311 A 1 HETATM 20 O O55 DMU . . . L 6 -26.69 32.224 35.213 1 116.31 ? O55 DMU 311 A 1 HETATM 21 C C57 DMU . . . L 6 -30.233 28.723 35.006 1 121.63 ? C57 DMU 311 A 1 HETATM 22 O O61 DMU . . . L 6 -30.338 27.294 34.906 1 126.94 ? O61 DMU 311 A 1 HETATM 23 C C5 DMU . . . L 6 -28.717 31.664 38.817 1 117.33 ? C5 DMU 311 A 1 HETATM 24 C C7 DMU . . . L 6 -29.859 30.712 39.368 1 116.98 ? C7 DMU 311 A 1 HETATM 25 C C8 DMU . . . L 6 -31.245 31.294 38.877 1 119.87 ? C8 DMU 311 A 1 HETATM 26 C C9 DMU . . . L 6 -31.213 31.357 37.322 1 120.05 ? C9 DMU 311 A 1 HETATM 27 O O1 DMU . . . L 6 -30.074 32.173 36.959 1 121.35 ? O1 DMU 311 A 1 HETATM 28 C C10 DMU . . . L 6 -28.808 31.612 37.306 1 119.19 ? C10 DMU 311 A 1 HETATM 29 O O2 DMU . . . L 6 -32.32 30.411 39.258 1 119.52 ? O2 DMU 311 A 1 HETATM 30 O O3 DMU . . . L 6 -27.515 30.878 39.219 1 110.44 ? O3 DMU 311 A 1 HETATM 31 O O4 DMU . . . L 6 -29.818 30.649 40.796 1 115.13 ? O4 DMU 311 A 1 HETATM 32 C C11 DMU . . . L 6 -32.504 31.954 36.817 1 119.84 ? C11 DMU 311 A 1 HETATM 33 O O6 DMU . . . L 6 -32.552 31.947 35.432 1 121.36 ? O6 DMU 311 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 660 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 33 #