data_5EIR # _model_server_result.job_id 0KoIN9GX3Tx9EbePE6Dyog _model_server_result.datetime_utc '2024-12-01 03:36:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 5EIR # _exptl.entry_id 5EIR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 505.448 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-6-oxidanylidene-7-(phenylmethyl)-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,1,1-tris(fluoranyl)methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EIR _cell.length_a 38.25 _cell.length_b 52.12 _cell.length_c 123.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SBH 5O8 . A 5O8 301 1_555 D S SO4 . A SO4 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.006 ? covale ? covale1 C CBG 5O8 . A 5O8 301 1_555 D O3 SO4 . A SO4 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.208 ? covale ? covale2 C CBG 5O8 . A 5O8 301 1_555 D O4 SO4 . A SO4 302 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'C18 H20 F3 N6 O6 S 1' _chem_comp.formula_weight 505.448 _chem_comp.id 5O8 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[(2~{R},3~{S},4~{R},5~{R})-5-[2-azanyl-6-oxidanylidene-7-(phenylmethyl)-1~{H}-purin-7-ium-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-1,1,1-tris(fluoranyl)methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAQ CAW 5O8 sing 1 n n CAQ N7 5O8 sing 2 n n CAM CAW 5O8 doub 3 n y CAM CAK 5O8 sing 4 n y CAW CAN 5O8 sing 5 n y CAK CAJ 5O8 doub 6 n y CAN CAL 5O8 doub 7 n y CAJ CAL 5O8 sing 8 n y O6 C6 5O8 doub 9 n n N7 C8 5O8 doub 10 n y N7 C5 5O8 sing 11 n y C8 N9 5O8 sing 12 n y C6 C5 5O8 sing 13 n n C6 N1 5O8 sing 14 n n C5 C4 5O8 doub 15 n y N9 C4 5O8 sing 16 n y N9 CBD 5O8 sing 17 n n C4 N3 5O8 sing 18 n n N1 C2 5O8 sing 19 n n OAC SBH 5O8 doub 20 n n CBD OAU 5O8 sing 21 n n CBD CBB 5O8 sing 22 n n OAD SBH 5O8 doub 23 n n N3 C2 5O8 doub 24 n n C2 N2 5O8 sing 25 n n OAU CBC 5O8 sing 26 n n FAG CBG 5O8 sing 27 n n SBH CBG 5O8 sing 28 n n SBH NAS 5O8 sing 29 n n CBB OAF 5O8 sing 30 n n CBB CBA 5O8 sing 31 n n CBG FAH 5O8 sing 32 n n CBG FAI 5O8 sing 33 n n CBC CAP 5O8 sing 34 n n CBC CBA 5O8 sing 35 n n NAS CAP 5O8 sing 36 n n CBA OAE 5O8 sing 37 n n C8 H1 5O8 sing 38 n n N1 H2 5O8 sing 39 n n N2 H3 5O8 sing 40 n n N2 H4 5O8 sing 41 n n CAM H5 5O8 sing 42 n n CAK H6 5O8 sing 43 n n CAJ H7 5O8 sing 44 n n CAL H8 5O8 sing 45 n n CAN H9 5O8 sing 46 n n CAQ H10 5O8 sing 47 n n CAQ H11 5O8 sing 48 n n CBD H12 5O8 sing 49 n n CBB H13 5O8 sing 50 n n OAF H14 5O8 sing 51 n n CBA H15 5O8 sing 52 n n OAE H16 5O8 sing 53 n n CBC H17 5O8 sing 54 n n CAP H18 5O8 sing 55 n n CAP H19 5O8 sing 56 n n NAS H20 5O8 sing 57 n n # _atom_sites.entry_id 5EIR _atom_sites.fract_transf_matrix[1][1] 0.026144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5O8 A 1 301 1 5O8 DRG . D 4 SO4 A 1 302 1 SO4 SO4 . E 5 HOH A 1 401 7 HOH HOH . E 5 HOH A 2 402 18 HOH HOH . E 5 HOH A 3 403 20 HOH HOH . E 5 HOH A 4 404 23 HOH HOH . E 5 HOH A 5 405 43 HOH HOH . E 5 HOH A 6 406 28 HOH HOH . E 5 HOH A 7 407 25 HOH HOH . E 5 HOH A 8 408 22 HOH HOH . E 5 HOH A 9 409 46 HOH HOH . E 5 HOH A 10 410 21 HOH HOH . E 5 HOH A 11 411 9 HOH HOH . E 5 HOH A 12 412 31 HOH HOH . E 5 HOH A 13 413 27 HOH HOH . E 5 HOH A 14 414 3 HOH HOH . E 5 HOH A 15 415 8 HOH HOH . E 5 HOH A 16 416 5 HOH HOH . E 5 HOH A 17 417 11 HOH HOH . E 5 HOH A 18 418 40 HOH HOH . E 5 HOH A 19 419 2 HOH HOH . E 5 HOH A 20 420 38 HOH HOH . E 5 HOH A 21 421 12 HOH HOH . E 5 HOH A 22 422 13 HOH HOH . E 5 HOH A 23 423 15 HOH HOH . E 5 HOH A 24 424 1 HOH HOH . E 5 HOH A 25 425 39 HOH HOH . E 5 HOH A 26 426 42 HOH HOH . E 5 HOH A 27 427 26 HOH HOH . E 5 HOH A 28 428 10 HOH HOH . E 5 HOH A 29 429 37 HOH HOH . E 5 HOH A 30 430 4 HOH HOH . E 5 HOH A 31 431 44 HOH HOH . F 5 HOH B 1 701 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 5O8 . A . C 3 4.768 -10.703 -3.954 0.52 36.93 ? C4 5O8 301 A 1 HETATM 2 C C4 5O8 . B . C 3 4.818 -10.822 -4.171 0.48 36.85 ? C4 5O8 301 A 1 HETATM 3 C C5 5O8 . A . C 3 4.207 -11.248 -5.099 0.52 36.18 ? C5 5O8 301 A 1 HETATM 4 C C5 5O8 . B . C 3 4.203 -11.322 -5.31 0.48 35.99 ? C5 5O8 301 A 1 HETATM 5 C C6 5O8 . A . C 3 2.854 -11.553 -5.134 0.52 34.62 ? C6 5O8 301 A 1 HETATM 6 C C6 5O8 . B . C 3 2.839 -11.572 -5.313 0.48 34.59 ? C6 5O8 301 A 1 HETATM 7 C C8 5O8 . A . C 3 6.329 -10.918 -5.444 0.52 36.43 ? C8 5O8 301 A 1 HETATM 8 C C8 5O8 . B . C 3 6.325 -11.07 -5.71 0.48 36.41 ? C8 5O8 301 A 1 HETATM 9 N N1 5O8 . A . C 3 2.082 -11.299 -3.999 0.52 33.8 ? N1 5O8 301 A 1 HETATM 10 N N1 5O8 . B . C 3 2.108 -11.31 -4.152 0.48 33.83 ? N1 5O8 301 A 1 HETATM 11 N N2 5O8 . A . C 3 1.973 -10.5 -1.778 0.52 34.33 ? N2 5O8 301 A 1 HETATM 12 N N2 5O8 . B . C 3 2.093 -10.551 -1.915 0.48 34.33 ? N2 5O8 301 A 1 HETATM 13 N N3 5O8 . A . C 3 4.01 -10.466 -2.872 0.52 37.41 ? N3 5O8 301 A 1 HETATM 14 N N3 5O8 . B . C 3 4.098 -10.577 -3.065 0.48 37.36 ? N3 5O8 301 A 1 HETATM 15 C CAM 5O8 . A . C 3 4.508 -14.359 -7.151 0.52 34.69 ? CAM 5O8 301 A 1 HETATM 16 C CAM 5O8 . B . C 3 6.518 -13.934 -7.864 0.48 33.63 ? CAM 5O8 301 A 1 HETATM 17 C CAK 5O8 . A . C 3 4.881 -15.698 -7.163 0.52 32.03 ? CAK 5O8 301 A 1 HETATM 18 C CAK 5O8 . B . C 3 6.769 -15.302 -7.891 0.48 34.98 ? CAK 5O8 301 A 1 HETATM 19 C CAJ 5O8 . A . C 3 6.209 -16.048 -7.377 0.52 33.23 ? CAJ 5O8 301 A 1 HETATM 20 C CAJ 5O8 . B . C 3 5.734 -16.202 -7.667 0.48 32.51 ? CAJ 5O8 301 A 1 HETATM 21 C CAL 5O8 . A . C 3 7.165 -15.058 -7.579 0.52 34.95 ? CAL 5O8 301 A 1 HETATM 22 C CAL 5O8 . B . C 3 4.449 -15.735 -7.416 0.48 32.13 ? CAL 5O8 301 A 1 HETATM 23 C CAN 5O8 . A . C 3 6.792 -13.719 -7.566 0.52 33.81 ? CAN 5O8 301 A 1 HETATM 24 C CAN 5O8 . B . C 3 4.199 -14.368 -7.389 0.48 34.24 ? CAN 5O8 301 A 1 HETATM 25 C CAW 5O8 . A . C 3 5.464 -13.369 -7.352 0.52 34.63 ? CAW 5O8 301 A 1 HETATM 26 C CAW 5O8 . B . C 3 5.233 -13.466 -7.614 0.48 34.4 ? CAW 5O8 301 A 1 HETATM 27 C CAQ 5O8 . A . C 3 5.054 -11.896 -7.338 0.52 34.19 ? CAQ 5O8 301 A 1 HETATM 28 C CAQ 5O8 . B . C 3 4.959 -11.96 -7.584 0.48 34.2 ? CAQ 5O8 301 A 1 HETATM 29 N N7 5O8 . A . C 3 5.194 -11.36 -5.976 0.52 35.7 ? N7 5O8 301 A 1 HETATM 30 N N7 5O8 . B . C 3 5.158 -11.454 -6.218 0.48 35.45 ? N7 5O8 301 A 1 HETATM 31 O O6 5O8 . A . C 3 2.346 -12.037 -6.144 0.52 33.58 ? O6 5O8 301 A 1 HETATM 32 O O6 5O8 . B . C 3 2.284 -12.015 -6.317 0.48 33.51 ? O6 5O8 301 A 1 HETATM 33 C C2 5O8 . A . C 3 2.696 -10.747 -2.867 0.52 34.94 ? C2 5O8 301 A 1 HETATM 34 C C2 5O8 . B . C 3 2.775 -10.806 -3.028 0.48 34.97 ? C2 5O8 301 A 1 HETATM 35 N N9 5O8 . A . C 3 6.065 -10.514 -4.199 0.52 36.43 ? N9 5O8 301 A 1 HETATM 36 N N9 5O8 . B . C 3 6.115 -10.68 -4.451 0.48 36.51 ? N9 5O8 301 A 1 HETATM 37 C CBD 5O8 . A . C 3 7.05 -9.949 -3.249 0.52 38.91 ? CBD 5O8 301 A 1 HETATM 38 C CBD 5O8 . B . C 3 7.161 -10.174 -3.526 0.48 39.06 ? CBD 5O8 301 A 1 HETATM 39 O OAU 5O8 . A . C 3 8.294 -9.722 -3.928 0.52 40.27 ? OAU 5O8 301 A 1 HETATM 40 O OAU 5O8 . B . C 3 7.787 -11.299 -2.848 0.48 42.27 ? OAU 5O8 301 A 1 HETATM 41 C CBB 5O8 . A . C 3 7.392 -10.996 -2.188 0.52 39.69 ? CBB 5O8 301 A 1 HETATM 42 C CBB 5O8 . B . C 3 6.547 -9.299 -2.434 0.48 36.18 ? CBB 5O8 301 A 1 HETATM 43 O OAF 5O8 . A . C 3 6.659 -10.721 -0.991 0.52 38.69 ? OAF 5O8 301 A 1 HETATM 44 O OAF 5O8 . B . C 3 7.533 -8.386 -1.944 0.48 33.2 ? OAF 5O8 301 A 1 HETATM 45 C CBA 5O8 . A . C 3 8.885 -10.784 -1.931 0.52 37.31 ? CBA 5O8 301 A 1 HETATM 46 C CBA 5O8 . B . C 3 6.203 -10.304 -1.349 0.48 37.25 ? CBA 5O8 301 A 1 HETATM 47 O OAE 5O8 . A . C 3 9.084 -10.379 -0.575 0.52 48.28 ? OAE 5O8 301 A 1 HETATM 48 O OAE 5O8 . B . C 3 6.279 -9.67 -0.07 0.48 36.19 ? OAE 5O8 301 A 1 HETATM 49 C CBC 5O8 . A . C 3 9.259 -9.634 -2.868 0.52 34.68 ? CBC 5O8 301 A 1 HETATM 50 C CBC 5O8 . B . C 3 7.319 -11.341 -1.471 0.48 40.18 ? CBC 5O8 301 A 1 HETATM 51 C CAP 5O8 . A . C 3 10.661 -9.871 -3.434 0.52 36.19 ? CAP 5O8 301 A 1 HETATM 52 C CAP 5O8 . B . C 3 6.758 -12.738 -1.174 0.48 41.72 ? CAP 5O8 301 A 1 HETATM 53 N NAS 5O8 . A . C 3 10.599 -9.899 -4.902 0.52 40.17 ? NAS 5O8 301 A 1 HETATM 54 N NAS 5O8 . B . C 3 5.431 -12.884 -1.792 0.48 41.45 ? NAS 5O8 301 A 1 HETATM 55 S SBH 5O8 . A . C 3 10.358 -11.43 -5.407 0.52 54.1 ? SBH 5O8 301 A 1 HETATM 56 S SBH 5O8 . B . C 3 5.46 -14.103 -2.874 0.48 34.82 ? SBH 5O8 301 A 1 HETATM 57 O OAC 5O8 . A . C 3 9.138 -11.991 -4.738 0.52 43.19 ? OAC 5O8 301 A 1 HETATM 58 O OAC 5O8 . B . C 3 6.717 -14.019 -3.689 0.48 35.32 ? OAC 5O8 301 A 1 HETATM 59 O OAD 5O8 . A . C 3 11.552 -12.267 -5.053 0.52 48.71 ? OAD 5O8 301 A 1 HETATM 60 O OAD 5O8 . B . C 3 4.269 -13.997 -3.779 0.48 35.68 ? OAD 5O8 301 A 1 HETATM 61 C CBG 5O8 . A . C 3 10.121 -11.444 -7.221 0.52 48.08 ? CBG 5O8 301 A 1 HETATM 62 C CBG 5O8 . B . C 3 5.413 -15.705 -1.99 0.48 43.11 ? CBG 5O8 301 A 1 HETATM 63 F FAH 5O8 . A . C 3 9.228 -10.519 -7.558 0.52 43.06 ? FAH 5O8 301 A 1 HETATM 64 F FAH 5O8 . B . C 3 6.627 -15.995 -1.535 0.48 51.5 ? FAH 5O8 301 A 1 HETATM 65 F FAI 5O8 . A . C 3 11.277 -11.184 -7.822 0.52 40.98 ? FAI 5O8 301 A 1 HETATM 66 F FAI 5O8 . B . C 3 4.565 -15.623 -0.97 0.48 38.53 ? FAI 5O8 301 A 1 HETATM 67 F FAG 5O8 . A . C 3 9.684 -12.64 -7.601 0.52 47.52 ? FAG 5O8 301 A 1 HETATM 68 F FAG 5O8 . B . C 3 5.012 -16.659 -2.824 0.48 42.21 ? FAG 5O8 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 68 #