data_5EIY # _model_server_result.job_id XFMrMYovIsneQSo4IYJQww _model_server_result.datetime_utc '2024-11-22 10:43:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":902}' # _entry.id 5EIY # _exptl.entry_id 5EIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.356 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-2-propanoyloxy-propyl] propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EIY _cell.length_a 68.475 _cell.length_b 216.654 _cell.length_c 221.335 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,N 1 1 B,C,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 4 4 3 BGC BGC C1 O1 . O4 HO4 . sing 4 ? 4 5 4 BGC BGC C1 O1 . O4 HO4 . sing 5 ? 4 6 5 BGC BGC C1 O1 . O4 HO4 . sing 6 ? 4 7 6 BGC BGC C1 O1 . O4 HO4 . sing 7 ? 4 8 7 BGC BGC C1 O1 . O4 HO4 . sing 8 ? 4 9 8 BGC BGC C1 O1 . O4 HO4 . sing 9 ? 4 10 9 BGC BGC C1 O1 . O4 HO4 . sing 10 ? 4 11 10 BGC BGC C1 O1 . O4 HO4 . sing 11 ? 4 12 11 BGC BGC C1 O1 . O4 HO4 . sing 12 ? 4 13 12 BGC BGC C1 O1 . O4 HO4 . sing 13 ? 4 14 13 BGC BGC C1 O1 . O4 HO4 . sing 14 ? 4 15 14 BGC BGC C1 O1 . O4 HO4 . sing 15 ? 4 16 15 BGC BGC C1 O1 . O4 HO4 . sing 16 ? 4 17 16 GAL BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 C 1 BGC C 901 BGC 4 n D BGC 2 C 2 BGC C 902 BGC 4 n D BGC 3 C 3 BGC C 903 BGC 4 n D BGC 4 C 4 BGC C 904 BGC 4 n D BGC 5 C 5 BGC C 905 BGC 4 n D BGC 6 C 6 BGC C 906 BGC 4 n D BGC 7 C 7 BGC C 907 BGC 4 n D BGC 8 C 8 BGC C 908 BGC 4 n D BGC 9 C 9 BGC C 909 BGC 4 n D BGC 10 C 10 BGC C 910 BGC 4 n D BGC 11 C 11 BGC C 911 BGC 4 n D BGC 12 C 12 BGC C 912 BGC 4 n D BGC 13 C 13 BGC C 913 BGC 4 n D BGC 14 C 14 BGC C 914 BGC 4 n D BGC 15 C 15 BGC C 915 BGC 4 n D BGC 16 C 16 BGC C 916 BGC 4 n D GAL 17 C 17 GAL C 917 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 167 B CYS 163 1_555 B SG CYS 434 B CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C C UNK 1 D UNK 169 1_555 C N UNK 2 D UNK 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C UNK 2 D UNK 170 1_555 C N UNK 3 D UNK 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C UNK 3 D UNK 171 1_555 C N UNK 4 D UNK 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 C C UNK 4 D UNK 172 1_555 C N UNK 5 D UNK 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C UNK 5 D UNK 173 1_555 C N UNK 6 D UNK 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C UNK 6 D UNK 174 1_555 C N UNK 7 D UNK 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 C C UNK 7 D UNK 175 1_555 C N UNK 8 D UNK 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 C C UNK 8 D UNK 176 1_555 C N UNK 9 D UNK 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 D O4 BGC . C BGC 1 1_555 D C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 D O4 BGC . C BGC 2 1_555 D C1 BGC . C BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 D O4 BGC . C BGC 3 1_555 D C1 BGC . C BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 D O4 BGC . C BGC 4 1_555 D C1 BGC . C BGC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale13 D O4 BGC . C BGC 5 1_555 D C1 BGC . C BGC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale14 D O4 BGC . C BGC 6 1_555 D C1 BGC . C BGC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale15 D O4 BGC . C BGC 7 1_555 D C1 BGC . C BGC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale16 D O4 BGC . C BGC 8 1_555 D C1 BGC . C BGC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale17 D O4 BGC . C BGC 9 1_555 D C1 BGC . C BGC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale18 D O4 BGC . C BGC 10 1_555 D C1 BGC . C BGC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 D O4 BGC . C BGC 11 1_555 D C1 BGC . C BGC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale20 D O4 BGC . C BGC 12 1_555 D C1 BGC . C BGC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale21 D O4 BGC . C BGC 13 1_555 D C1 BGC . C BGC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale22 D O4 BGC . C BGC 14 1_555 D C1 BGC . C BGC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale23 D O4 BGC . C BGC 15 1_555 D C1 BGC . C BGC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale24 D O4 BGC . C BGC 16 1_555 D C1 GAL . C GAL 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 B O GLY 235 B GLY 231 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc2 B O LEU 238 B LEU 234 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 B O GLU 241 B GLU 237 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc4 B O ALA 491 B ALA 487 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C14 H29 N O8 P 1' _chem_comp.formula_weight 370.356 _chem_comp.id 43Y _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-2-propanoyloxy-propyl] propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-dipropionyl-sn-glycero-3-phosphocholine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N 43Y sing 1 n n C8 N 43Y sing 2 n n O1P P 43Y doub 3 n n N C7 43Y sing 4 n n N C5 43Y sing 5 n n O2P P 43Y sing 6 n n O4P P 43Y sing 7 n n O4P C4 43Y sing 8 n n P O3P 43Y sing 9 n n C4 C5 43Y sing 10 n n O3P C1 43Y sing 11 n n C1 C2 43Y sing 12 n n O2 C2 43Y sing 13 n n O2 C31 43Y sing 14 n n C2 C3 43Y sing 15 n n C3 O3 43Y sing 16 n n C32 C31 43Y sing 17 n n C32 C33 43Y sing 18 n n C31 O31 43Y doub 19 n n O3 C11 43Y sing 20 n n C11 O11 43Y doub 21 n n C3 H2 43Y sing 22 n n C3 H3 43Y sing 23 n n C2 H4 43Y sing 24 n n C1 H5 43Y sing 25 n n C1 H6 43Y sing 26 n n O2P H7 43Y sing 27 n n C4 H8 43Y sing 28 n n C4 H9 43Y sing 29 n n C5 H10 43Y sing 30 n n C5 H11 43Y sing 31 n n C7 H12 43Y sing 32 n n C7 H13 43Y sing 33 n n C7 H14 43Y sing 34 n n C8 H15 43Y sing 35 n n C8 H16 43Y sing 36 n n C8 H17 43Y sing 37 n n C6 H18 43Y sing 38 n n C6 H19 43Y sing 39 n n C6 H20 43Y sing 40 n n C32 H21 43Y sing 41 n n C32 H22 43Y sing 42 n n C33 H23 43Y sing 43 n n C33 H24 43Y sing 44 n n C33 H25 43Y sing 45 n n C11 C9 43Y sing 46 n n C9 C10 43Y sing 47 n n C9 H1 43Y sing 48 n n C9 H26 43Y sing 49 n n C10 H27 43Y sing 50 n n C10 H28 43Y sing 51 n n C10 H29 43Y sing 52 n n # _atom_sites.entry_id 5EIY _atom_sites.fract_transf_matrix[1][1] 0.014604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLC A 1 901 922 PLC PLC . F 6 43Y A 1 902 923 43Y 3PE . G 7 C2E A 1 920 919 C2E C2E . H 7 C2E A 1 921 920 C2E C2E . I 8 LDA A 1 922 1 LDA LDA . J 8 LDA A 1 923 2 LDA LDA . K 9 MG A 1 924 2 MG MG . L 10 660 A 1 925 1 660 XXX . M 9 MG B 1 801 1 MG MG . N 11 HOH A 1 1001 7 HOH HOH . N 11 HOH A 2 1002 1 HOH HOH . N 11 HOH A 3 1003 5 HOH HOH . N 11 HOH A 4 1004 10 HOH HOH . N 11 HOH A 5 1005 11 HOH HOH . N 11 HOH A 6 1006 4 HOH HOH . N 11 HOH A 7 1007 6 HOH HOH . N 11 HOH A 8 1008 8 HOH HOH . N 11 HOH A 9 1009 3 HOH HOH . N 11 HOH A 10 1010 9 HOH HOH . N 11 HOH A 11 1011 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 43Y . . . F 6 -13.906 1.509 60.898 1 112.31 ? C11 43Y 902 A 1 HETATM 2 O O11 43Y . . . F 6 -13.715 1.073 61.982 1 116.65 ? O11 43Y 902 A 1 HETATM 3 O O3 43Y . . . F 6 -14.831 2.547 60.706 1 104.96 ? O3 43Y 902 A 1 HETATM 4 C C3 43Y . . . F 6 -16.06 2.367 61.355 1 102.15 ? C3 43Y 902 A 1 HETATM 5 C C2 43Y . . . F 6 -16.795 3.702 61.488 1 111.28 ? C2 43Y 902 A 1 HETATM 6 C C1 43Y . . . F 6 -16.408 4.359 62.812 1 113.19 ? C1 43Y 902 A 1 HETATM 7 O O3P 43Y . . . F 6 -16.662 5.735 62.764 1 111.83 ? O3P 43Y 902 A 1 HETATM 8 P P 43Y . . . F 6 -16.112 6.678 64.001 1 105.98 ? P 43Y 902 A 1 HETATM 9 O O1P 43Y . . . F 6 -14.713 7.163 63.695 1 99.65 ? O1P 43Y 902 A 1 HETATM 10 O O2P 43Y . . . F 6 -16.099 5.867 65.273 1 100.43 ? O2P 43Y 902 A 1 HETATM 11 O O4P 43Y . . . F 6 -17.103 7.98 64.195 1 100.28 ? O4P 43Y 902 A 1 HETATM 12 C C4 43Y . . . F 6 -18.354 7.813 64.797 1 95.97 ? C4 43Y 902 A 1 HETATM 13 C C5 43Y . . . F 6 -18.732 9.122 65.484 1 91.81 ? C5 43Y 902 A 1 HETATM 14 N N 43Y . . . F 6 -19.305 10.037 64.513 1 88 ? N 43Y 902 A 1 HETATM 15 O O2 43Y . . . F 6 -18.177 3.477 61.465 1 122.92 ? O2 43Y 902 A 1 HETATM 16 C C31 43Y . . . F 6 -18.873 4.155 60.455 1 120.46 ? C31 43Y 902 A 1 HETATM 17 O O31 43Y . . . F 6 -18.325 4.98 59.804 1 129.41 ? O31 43Y 902 A 1 HETATM 18 C C32 43Y . . . F 6 -20.344 3.834 60.193 1 102.5 ? C32 43Y 902 A 1 HETATM 19 C C9 43Y . . . F 6 -13.137 0.933 59.71 1 110.31 ? C9 43Y 902 A 1 HETATM 20 C C10 43Y . . . F 6 -11.814 0.339 60.189 1 107.03 ? C10 43Y 902 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #