data_5EIY # _model_server_result.job_id 7GBJhVcwB91dG7eFb2jDMg _model_server_result.datetime_utc '2024-11-06 01:51:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eiy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":922}' # _entry.id 5EIY # _exptl.entry_id 5EIY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EIY _cell.length_a 68.475 _cell.length_b 216.654 _cell.length_c 221.335 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EIY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K,L,N 1 1 B,C,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 J N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 4 4 3 BGC BGC C1 O1 . O4 HO4 . sing 4 ? 4 5 4 BGC BGC C1 O1 . O4 HO4 . sing 5 ? 4 6 5 BGC BGC C1 O1 . O4 HO4 . sing 6 ? 4 7 6 BGC BGC C1 O1 . O4 HO4 . sing 7 ? 4 8 7 BGC BGC C1 O1 . O4 HO4 . sing 8 ? 4 9 8 BGC BGC C1 O1 . O4 HO4 . sing 9 ? 4 10 9 BGC BGC C1 O1 . O4 HO4 . sing 10 ? 4 11 10 BGC BGC C1 O1 . O4 HO4 . sing 11 ? 4 12 11 BGC BGC C1 O1 . O4 HO4 . sing 12 ? 4 13 12 BGC BGC C1 O1 . O4 HO4 . sing 13 ? 4 14 13 BGC BGC C1 O1 . O4 HO4 . sing 14 ? 4 15 14 BGC BGC C1 O1 . O4 HO4 . sing 15 ? 4 16 15 BGC BGC C1 O1 . O4 HO4 . sing 16 ? 4 17 16 GAL BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 C 1 BGC C 901 BGC 4 n D BGC 2 C 2 BGC C 902 BGC 4 n D BGC 3 C 3 BGC C 903 BGC 4 n D BGC 4 C 4 BGC C 904 BGC 4 n D BGC 5 C 5 BGC C 905 BGC 4 n D BGC 6 C 6 BGC C 906 BGC 4 n D BGC 7 C 7 BGC C 907 BGC 4 n D BGC 8 C 8 BGC C 908 BGC 4 n D BGC 9 C 9 BGC C 909 BGC 4 n D BGC 10 C 10 BGC C 910 BGC 4 n D BGC 11 C 11 BGC C 911 BGC 4 n D BGC 12 C 12 BGC C 912 BGC 4 n D BGC 13 C 13 BGC C 913 BGC 4 n D BGC 14 C 14 BGC C 914 BGC 4 n D BGC 15 C 15 BGC C 915 BGC 4 n D BGC 16 C 16 BGC C 916 BGC 4 n D GAL 17 C 17 GAL C 917 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 167 B CYS 163 1_555 B SG CYS 434 B CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 C C UNK 1 D UNK 169 1_555 C N UNK 2 D UNK 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 C C UNK 2 D UNK 170 1_555 C N UNK 3 D UNK 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C UNK 3 D UNK 171 1_555 C N UNK 4 D UNK 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 C C UNK 4 D UNK 172 1_555 C N UNK 5 D UNK 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 C C UNK 5 D UNK 173 1_555 C N UNK 6 D UNK 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 C C UNK 6 D UNK 174 1_555 C N UNK 7 D UNK 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 C C UNK 7 D UNK 175 1_555 C N UNK 8 D UNK 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 C C UNK 8 D UNK 176 1_555 C N UNK 9 D UNK 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 D O4 BGC . C BGC 1 1_555 D C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale10 D O4 BGC . C BGC 2 1_555 D C1 BGC . C BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 D O4 BGC . C BGC 3 1_555 D C1 BGC . C BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale12 D O4 BGC . C BGC 4 1_555 D C1 BGC . C BGC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale13 D O4 BGC . C BGC 5 1_555 D C1 BGC . C BGC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale14 D O4 BGC . C BGC 6 1_555 D C1 BGC . C BGC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale15 D O4 BGC . C BGC 7 1_555 D C1 BGC . C BGC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale16 D O4 BGC . C BGC 8 1_555 D C1 BGC . C BGC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale17 D O4 BGC . C BGC 9 1_555 D C1 BGC . C BGC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale18 D O4 BGC . C BGC 10 1_555 D C1 BGC . C BGC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 D O4 BGC . C BGC 11 1_555 D C1 BGC . C BGC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale20 D O4 BGC . C BGC 12 1_555 D C1 BGC . C BGC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale21 D O4 BGC . C BGC 13 1_555 D C1 BGC . C BGC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale22 D O4 BGC . C BGC 14 1_555 D C1 BGC . C BGC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale23 D O4 BGC . C BGC 15 1_555 D C1 BGC . C BGC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale24 D O4 BGC . C BGC 16 1_555 D C1 GAL . C GAL 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? metalc ? metalc1 B O GLY 235 B GLY 231 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc2 B O LEU 238 B LEU 234 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc3 B O GLU 241 B GLU 237 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc4 B O ALA 491 B ALA 487 1_555 M MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 413 n n N1 CM1 LDA sing 414 n n N1 CM2 LDA sing 415 n n N1 C1 LDA sing 416 n n CM1 HM11 LDA sing 417 n n CM1 HM12 LDA sing 418 n n CM1 HM13 LDA sing 419 n n CM2 HM21 LDA sing 420 n n CM2 HM22 LDA sing 421 n n CM2 HM23 LDA sing 422 n n C1 C2 LDA sing 423 n n C1 H11 LDA sing 424 n n C1 H12 LDA sing 425 n n C2 C3 LDA sing 426 n n C2 H21 LDA sing 427 n n C2 H22 LDA sing 428 n n C3 C4 LDA sing 429 n n C3 H31 LDA sing 430 n n C3 H32 LDA sing 431 n n C4 C5 LDA sing 432 n n C4 H41 LDA sing 433 n n C4 H42 LDA sing 434 n n C5 C6 LDA sing 435 n n C5 H51 LDA sing 436 n n C5 H52 LDA sing 437 n n C6 C7 LDA sing 438 n n C6 H61 LDA sing 439 n n C6 H62 LDA sing 440 n n C7 C8 LDA sing 441 n n C7 H71 LDA sing 442 n n C7 H72 LDA sing 443 n n C8 C9 LDA sing 444 n n C8 H81 LDA sing 445 n n C8 H82 LDA sing 446 n n C9 C10 LDA sing 447 n n C9 H91 LDA sing 448 n n C9 H92 LDA sing 449 n n C10 C11 LDA sing 450 n n C10 H101 LDA sing 451 n n C10 H102 LDA sing 452 n n C11 C12 LDA sing 453 n n C11 H111 LDA sing 454 n n C11 H112 LDA sing 455 n n C12 H121 LDA sing 456 n n C12 H122 LDA sing 457 n n C12 H123 LDA sing 458 n n # _atom_sites.entry_id 5EIY _atom_sites.fract_transf_matrix[1][1] 0.014604 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLC A 1 901 922 PLC PLC . F 6 43Y A 1 902 923 43Y 3PE . G 7 C2E A 1 920 919 C2E C2E . H 7 C2E A 1 921 920 C2E C2E . I 8 LDA A 1 922 1 LDA LDA . J 8 LDA A 1 923 2 LDA LDA . K 9 MG A 1 924 2 MG MG . L 10 660 A 1 925 1 660 XXX . M 9 MG B 1 801 1 MG MG . N 11 HOH A 1 1001 7 HOH HOH . N 11 HOH A 2 1002 1 HOH HOH . N 11 HOH A 3 1003 5 HOH HOH . N 11 HOH A 4 1004 10 HOH HOH . N 11 HOH A 5 1005 11 HOH HOH . N 11 HOH A 6 1006 4 HOH HOH . N 11 HOH A 7 1007 6 HOH HOH . N 11 HOH A 8 1008 8 HOH HOH . N 11 HOH A 9 1009 3 HOH HOH . N 11 HOH A 10 1010 9 HOH HOH . N 11 HOH A 11 1011 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . I 8 3.754 1.602 47.903 0.64 82.07 ? N1 LDA 922 A 1 HETATM 2 O O1 LDA . . . I 8 4.145 0.417 47.867 0.64 85.1 ? O1 LDA 922 A 1 HETATM 3 C CM1 LDA . . . I 8 3.905 2.172 46.555 0.64 73.92 ? CM1 LDA 922 A 1 HETATM 4 C CM2 LDA . . . I 8 4.579 2.364 48.856 0.64 81.46 ? CM2 LDA 922 A 1 HETATM 5 C C1 LDA . . . I 8 2.348 1.632 48.28 0.64 83.94 ? C1 LDA 922 A 1 HETATM 6 C C2 LDA . . . I 8 2.273 1.223 49.75 0.64 79.89 ? C2 LDA 922 A 1 HETATM 7 C C3 LDA . . . I 8 0.879 0.737 50.135 0.64 73.33 ? C3 LDA 922 A 1 HETATM 8 C C4 LDA . . . I 8 0.511 1.178 51.548 0.64 69.4 ? C4 LDA 922 A 1 HETATM 9 C C5 LDA . . . I 8 -0.596 0.318 52.154 0.64 62.83 ? C5 LDA 922 A 1 HETATM 10 C C6 LDA . . . I 8 -0.04 -0.694 53.156 0.64 67.25 ? C6 LDA 922 A 1 HETATM 11 C C7 LDA . . . I 8 -0.868 -0.723 54.44 0.64 67.37 ? C7 LDA 922 A 1 HETATM 12 C C8 LDA . . . I 8 -0.179 -1.503 55.559 0.64 63.54 ? C8 LDA 922 A 1 HETATM 13 C C9 LDA . . . I 8 -0.873 -1.262 56.897 0.64 66.34 ? C9 LDA 922 A 1 HETATM 14 C C10 LDA . . . I 8 -0.84 -2.488 57.807 0.64 66.02 ? C10 LDA 922 A 1 HETATM 15 C C11 LDA . . . I 8 -1.151 -2.104 59.252 0.64 60.22 ? C11 LDA 922 A 1 HETATM 16 C C12 LDA . . . I 8 -0.403 -2.986 60.246 0.64 52.96 ? C12 LDA 922 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #