data_5EIZ # _model_server_result.job_id Ke_DgsimhnIPn2DKoVovNw _model_server_result.datetime_utc '2024-11-25 07:45:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eiz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 5EIZ # _exptl.entry_id 5EIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EIZ _cell.length_a 67.696 _cell.length_b 67.958 _cell.length_c 86.519 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5EIZ _atom_sites.fract_transf_matrix[1][1] 0.014772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011558 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GOL A 1 201 4 GOL GOL . E 3 SO4 A 1 202 1 SO4 SO4 . F 4 IPA A 1 203 2 IPA IPA . G 2 GOL B 1 201 3 GOL GOL . H 3 SO4 B 1 202 3 SO4 SO4 . I 4 IPA B 1 203 1 IPA IPA . J 2 GOL C 1 201 1 GOL GOL . K 3 SO4 C 1 202 2 SO4 SO4 . L 5 HOH A 1 301 375 HOH HOH . L 5 HOH A 2 302 10 HOH HOH . L 5 HOH A 3 303 180 HOH HOH . L 5 HOH A 4 304 252 HOH HOH . L 5 HOH A 5 305 237 HOH HOH . L 5 HOH A 6 306 299 HOH HOH . L 5 HOH A 7 307 76 HOH HOH . L 5 HOH A 8 308 14 HOH HOH . L 5 HOH A 9 309 182 HOH HOH . L 5 HOH A 10 310 48 HOH HOH . L 5 HOH A 11 311 358 HOH HOH . L 5 HOH A 12 312 21 HOH HOH . L 5 HOH A 13 313 109 HOH HOH . L 5 HOH A 14 314 17 HOH HOH . L 5 HOH A 15 315 85 HOH HOH . L 5 HOH A 16 316 101 HOH HOH . L 5 HOH A 17 317 61 HOH HOH . L 5 HOH A 18 318 146 HOH HOH . L 5 HOH A 19 319 73 HOH HOH . L 5 HOH A 20 320 227 HOH HOH . L 5 HOH A 21 321 265 HOH HOH . L 5 HOH A 22 322 127 HOH HOH . L 5 HOH A 23 323 122 HOH HOH . L 5 HOH A 24 324 106 HOH HOH . L 5 HOH A 25 325 103 HOH HOH . L 5 HOH A 26 326 82 HOH HOH . L 5 HOH A 27 327 91 HOH HOH . L 5 HOH A 28 328 245 HOH HOH . L 5 HOH A 29 329 143 HOH HOH . L 5 HOH A 30 330 488 HOH HOH . L 5 HOH A 31 331 464 HOH HOH . L 5 HOH A 32 332 126 HOH HOH . L 5 HOH A 33 333 235 HOH HOH . L 5 HOH A 34 334 262 HOH HOH . L 5 HOH A 35 335 261 HOH HOH . L 5 HOH A 36 336 413 HOH HOH . L 5 HOH A 37 337 123 HOH HOH . L 5 HOH A 38 338 2 HOH HOH . L 5 HOH A 39 339 97 HOH HOH . L 5 HOH A 40 340 39 HOH HOH . L 5 HOH A 41 341 9 HOH HOH . L 5 HOH A 42 342 147 HOH HOH . L 5 HOH A 43 343 44 HOH HOH . L 5 HOH A 44 344 119 HOH HOH . L 5 HOH A 45 345 168 HOH HOH . L 5 HOH A 46 346 470 HOH HOH . L 5 HOH A 47 347 135 HOH HOH . L 5 HOH A 48 348 200 HOH HOH . L 5 HOH A 49 349 89 HOH HOH . L 5 HOH A 50 350 159 HOH HOH . L 5 HOH A 51 351 51 HOH HOH . L 5 HOH A 52 352 70 HOH HOH . L 5 HOH A 53 353 468 HOH HOH . L 5 HOH A 54 354 125 HOH HOH . L 5 HOH A 55 355 43 HOH HOH . L 5 HOH A 56 356 7 HOH HOH . L 5 HOH A 57 357 264 HOH HOH . L 5 HOH A 58 358 38 HOH HOH . L 5 HOH A 59 359 491 HOH HOH . L 5 HOH A 60 360 69 HOH HOH . L 5 HOH A 61 361 436 HOH HOH . L 5 HOH A 62 362 68 HOH HOH . L 5 HOH A 63 363 259 HOH HOH . L 5 HOH A 64 364 277 HOH HOH . L 5 HOH A 65 365 169 HOH HOH . L 5 HOH A 66 366 77 HOH HOH . L 5 HOH A 67 367 463 HOH HOH . L 5 HOH A 68 368 55 HOH HOH . L 5 HOH A 69 369 40 HOH HOH . L 5 HOH A 70 370 150 HOH HOH . L 5 HOH A 71 371 415 HOH HOH . L 5 HOH A 72 372 287 HOH HOH . L 5 HOH A 73 373 465 HOH HOH . L 5 HOH A 74 374 214 HOH HOH . L 5 HOH A 75 375 424 HOH HOH . L 5 HOH A 76 376 149 HOH HOH . L 5 HOH A 77 377 93 HOH HOH . L 5 HOH A 78 378 472 HOH HOH . L 5 HOH A 79 379 477 HOH HOH . L 5 HOH A 80 380 230 HOH HOH . L 5 HOH A 81 381 281 HOH HOH . L 5 HOH A 82 382 172 HOH HOH . L 5 HOH A 83 383 467 HOH HOH . L 5 HOH A 84 384 487 HOH HOH . L 5 HOH A 85 385 154 HOH HOH . L 5 HOH A 86 386 483 HOH HOH . L 5 HOH A 87 387 113 HOH HOH . L 5 HOH A 88 388 321 HOH HOH . L 5 HOH A 89 389 250 HOH HOH . L 5 HOH A 90 390 414 HOH HOH . L 5 HOH A 91 391 211 HOH HOH . L 5 HOH A 92 392 268 HOH HOH . L 5 HOH A 93 393 471 HOH HOH . L 5 HOH A 94 394 416 HOH HOH . L 5 HOH A 95 395 137 HOH HOH . L 5 HOH A 96 396 228 HOH HOH . L 5 HOH A 97 397 469 HOH HOH . L 5 HOH A 98 398 216 HOH HOH . L 5 HOH A 99 399 195 HOH HOH . L 5 HOH A 100 400 236 HOH HOH . L 5 HOH A 101 401 25 HOH HOH . L 5 HOH A 102 402 303 HOH HOH . L 5 HOH A 103 403 244 HOH HOH . L 5 HOH A 104 404 248 HOH HOH . L 5 HOH A 105 405 105 HOH HOH . L 5 HOH A 106 406 428 HOH HOH . L 5 HOH A 107 407 481 HOH HOH . L 5 HOH A 108 408 162 HOH HOH . L 5 HOH A 109 409 420 HOH HOH . L 5 HOH A 110 410 217 HOH HOH . M 5 HOH B 1 301 492 HOH HOH . M 5 HOH B 2 302 152 HOH HOH . M 5 HOH B 3 303 462 HOH HOH . M 5 HOH B 4 304 233 HOH HOH . M 5 HOH B 5 305 20 HOH HOH . M 5 HOH B 6 306 144 HOH HOH . M 5 HOH B 7 307 175 HOH HOH . M 5 HOH B 8 308 140 HOH HOH . M 5 HOH B 9 309 310 HOH HOH . M 5 HOH B 10 310 100 HOH HOH . M 5 HOH B 11 311 54 HOH HOH . M 5 HOH B 12 312 35 HOH HOH . M 5 HOH B 13 313 4 HOH HOH . M 5 HOH B 14 314 260 HOH HOH . M 5 HOH B 15 315 15 HOH HOH . M 5 HOH B 16 316 185 HOH HOH . M 5 HOH B 17 317 139 HOH HOH . M 5 HOH B 18 318 133 HOH HOH . M 5 HOH B 19 319 37 HOH HOH . M 5 HOH B 20 320 63 HOH HOH . M 5 HOH B 21 321 60 HOH HOH . M 5 HOH B 22 322 104 HOH HOH . M 5 HOH B 23 323 121 HOH HOH . M 5 HOH B 24 324 171 HOH HOH . M 5 HOH B 25 325 340 HOH HOH . M 5 HOH B 26 326 130 HOH HOH . M 5 HOH B 27 327 22 HOH HOH . M 5 HOH B 28 328 41 HOH HOH . M 5 HOH B 29 329 292 HOH HOH . M 5 HOH B 30 330 176 HOH HOH . M 5 HOH B 31 331 136 HOH HOH . M 5 HOH B 32 332 178 HOH HOH . M 5 HOH B 33 333 201 HOH HOH . M 5 HOH B 34 334 480 HOH HOH . M 5 HOH B 35 335 53 HOH HOH . M 5 HOH B 36 336 66 HOH HOH . M 5 HOH B 37 337 30 HOH HOH . M 5 HOH B 38 338 190 HOH HOH . M 5 HOH B 39 339 188 HOH HOH . M 5 HOH B 40 340 84 HOH HOH . M 5 HOH B 41 341 1 HOH HOH . M 5 HOH B 42 342 110 HOH HOH . M 5 HOH B 43 343 52 HOH HOH . M 5 HOH B 44 344 163 HOH HOH . M 5 HOH B 45 345 116 HOH HOH . M 5 HOH B 46 346 478 HOH HOH . M 5 HOH B 47 347 6 HOH HOH . M 5 HOH B 48 348 318 HOH HOH . M 5 HOH B 49 349 148 HOH HOH . M 5 HOH B 50 350 153 HOH HOH . M 5 HOH B 51 351 3 HOH HOH . M 5 HOH B 52 352 99 HOH HOH . M 5 HOH B 53 353 19 HOH HOH . M 5 HOH B 54 354 224 HOH HOH . M 5 HOH B 55 355 67 HOH HOH . M 5 HOH B 56 356 58 HOH HOH . M 5 HOH B 57 357 27 HOH HOH . M 5 HOH B 58 358 98 HOH HOH . M 5 HOH B 59 359 90 HOH HOH . M 5 HOH B 60 360 111 HOH HOH . M 5 HOH B 61 361 29 HOH HOH . M 5 HOH B 62 362 78 HOH HOH . M 5 HOH B 63 363 74 HOH HOH . M 5 HOH B 64 364 107 HOH HOH . M 5 HOH B 65 365 42 HOH HOH . M 5 HOH B 66 366 12 HOH HOH . M 5 HOH B 67 367 196 HOH HOH . M 5 HOH B 68 368 141 HOH HOH . M 5 HOH B 69 369 155 HOH HOH . M 5 HOH B 70 370 324 HOH HOH . M 5 HOH B 71 371 11 HOH HOH . M 5 HOH B 72 372 50 HOH HOH . M 5 HOH B 73 373 479 HOH HOH . M 5 HOH B 74 374 13 HOH HOH . M 5 HOH B 75 375 173 HOH HOH . M 5 HOH B 76 376 156 HOH HOH . M 5 HOH B 77 377 296 HOH HOH . M 5 HOH B 78 378 246 HOH HOH . M 5 HOH B 79 379 327 HOH HOH . M 5 HOH B 80 380 484 HOH HOH . M 5 HOH B 81 381 494 HOH HOH . M 5 HOH B 82 382 231 HOH HOH . M 5 HOH B 83 383 315 HOH HOH . M 5 HOH B 84 384 16 HOH HOH . M 5 HOH B 85 385 418 HOH HOH . M 5 HOH B 86 386 412 HOH HOH . M 5 HOH B 87 387 430 HOH HOH . M 5 HOH B 88 388 419 HOH HOH . M 5 HOH B 89 389 32 HOH HOH . M 5 HOH B 90 390 313 HOH HOH . M 5 HOH B 91 391 421 HOH HOH . M 5 HOH B 92 392 493 HOH HOH . M 5 HOH B 93 393 213 HOH HOH . M 5 HOH B 94 394 203 HOH HOH . M 5 HOH B 95 395 205 HOH HOH . M 5 HOH B 96 396 447 HOH HOH . M 5 HOH B 97 397 427 HOH HOH . M 5 HOH B 98 398 426 HOH HOH . M 5 HOH B 99 399 210 HOH HOH . M 5 HOH B 100 400 249 HOH HOH . N 5 HOH C 1 301 485 HOH HOH . N 5 HOH C 2 302 291 HOH HOH . N 5 HOH C 3 303 301 HOH HOH . N 5 HOH C 4 304 114 HOH HOH . N 5 HOH C 5 305 208 HOH HOH . N 5 HOH C 6 306 225 HOH HOH . N 5 HOH C 7 307 194 HOH HOH . N 5 HOH C 8 308 199 HOH HOH . N 5 HOH C 9 309 120 HOH HOH . N 5 HOH C 10 310 45 HOH HOH . N 5 HOH C 11 311 151 HOH HOH . N 5 HOH C 12 312 8 HOH HOH . N 5 HOH C 13 313 124 HOH HOH . N 5 HOH C 14 314 243 HOH HOH . N 5 HOH C 15 315 47 HOH HOH . N 5 HOH C 16 316 267 HOH HOH . N 5 HOH C 17 317 95 HOH HOH . N 5 HOH C 18 318 87 HOH HOH . N 5 HOH C 19 319 174 HOH HOH . N 5 HOH C 20 320 36 HOH HOH . N 5 HOH C 21 321 59 HOH HOH . N 5 HOH C 22 322 257 HOH HOH . N 5 HOH C 23 323 65 HOH HOH . N 5 HOH C 24 324 220 HOH HOH . N 5 HOH C 25 325 192 HOH HOH . N 5 HOH C 26 326 83 HOH HOH . N 5 HOH C 27 327 75 HOH HOH . N 5 HOH C 28 328 72 HOH HOH . N 5 HOH C 29 329 219 HOH HOH . N 5 HOH C 30 330 33 HOH HOH . N 5 HOH C 31 331 5 HOH HOH . N 5 HOH C 32 332 209 HOH HOH . N 5 HOH C 33 333 92 HOH HOH . N 5 HOH C 34 334 177 HOH HOH . N 5 HOH C 35 335 134 HOH HOH . N 5 HOH C 36 336 26 HOH HOH . N 5 HOH C 37 337 189 HOH HOH . N 5 HOH C 38 338 461 HOH HOH . N 5 HOH C 39 339 118 HOH HOH . N 5 HOH C 40 340 215 HOH HOH . N 5 HOH C 41 341 325 HOH HOH . N 5 HOH C 42 342 18 HOH HOH . N 5 HOH C 43 343 242 HOH HOH . N 5 HOH C 44 344 145 HOH HOH . N 5 HOH C 45 345 466 HOH HOH . N 5 HOH C 46 346 96 HOH HOH . N 5 HOH C 47 347 129 HOH HOH . N 5 HOH C 48 348 274 HOH HOH . N 5 HOH C 49 349 417 HOH HOH . N 5 HOH C 50 350 158 HOH HOH . N 5 HOH C 51 351 81 HOH HOH . N 5 HOH C 52 352 142 HOH HOH . N 5 HOH C 53 353 24 HOH HOH . N 5 HOH C 54 354 102 HOH HOH . N 5 HOH C 55 355 489 HOH HOH . N 5 HOH C 56 356 164 HOH HOH . N 5 HOH C 57 357 71 HOH HOH . N 5 HOH C 58 358 88 HOH HOH . N 5 HOH C 59 359 23 HOH HOH . N 5 HOH C 60 360 183 HOH HOH . N 5 HOH C 61 361 367 HOH HOH . N 5 HOH C 62 362 360 HOH HOH . N 5 HOH C 63 363 271 HOH HOH . N 5 HOH C 64 364 490 HOH HOH . N 5 HOH C 65 365 86 HOH HOH . N 5 HOH C 66 366 80 HOH HOH . N 5 HOH C 67 367 476 HOH HOH . N 5 HOH C 68 368 138 HOH HOH . N 5 HOH C 69 369 167 HOH HOH . N 5 HOH C 70 370 62 HOH HOH . N 5 HOH C 71 371 218 HOH HOH . N 5 HOH C 72 372 221 HOH HOH . N 5 HOH C 73 373 34 HOH HOH . N 5 HOH C 74 374 379 HOH HOH . N 5 HOH C 75 375 226 HOH HOH . N 5 HOH C 76 376 46 HOH HOH . N 5 HOH C 77 377 161 HOH HOH . N 5 HOH C 78 378 411 HOH HOH . N 5 HOH C 79 379 112 HOH HOH . N 5 HOH C 80 380 193 HOH HOH . N 5 HOH C 81 381 184 HOH HOH . N 5 HOH C 82 382 495 HOH HOH . N 5 HOH C 83 383 191 HOH HOH . N 5 HOH C 84 384 64 HOH HOH . N 5 HOH C 85 385 338 HOH HOH . N 5 HOH C 86 386 458 HOH HOH . N 5 HOH C 87 387 79 HOH HOH . N 5 HOH C 88 388 132 HOH HOH . N 5 HOH C 89 389 337 HOH HOH . N 5 HOH C 90 390 423 HOH HOH . N 5 HOH C 91 391 57 HOH HOH . N 5 HOH C 92 392 160 HOH HOH . N 5 HOH C 93 393 437 HOH HOH . N 5 HOH C 94 394 170 HOH HOH . N 5 HOH C 95 395 28 HOH HOH . N 5 HOH C 96 396 179 HOH HOH . N 5 HOH C 97 397 157 HOH HOH . N 5 HOH C 98 398 115 HOH HOH . N 5 HOH C 99 399 433 HOH HOH . N 5 HOH C 100 400 222 HOH HOH . N 5 HOH C 101 401 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 -18.988 0.293 22.696 1 23.74 ? C1 GOL 201 C 1 HETATM 2 O O1 GOL . . . J 2 -19.416 -0.208 24.005 1 20.98 ? O1 GOL 201 C 1 HETATM 3 C C2 GOL . . . J 2 -18.812 -0.766 21.572 1 26.92 ? C2 GOL 201 C 1 HETATM 4 O O2 GOL . . . J 2 -19.077 -2.135 21.881 1 28.12 ? O2 GOL 201 C 1 HETATM 5 C C3 GOL . . . J 2 -19.415 -0.347 20.25 1 27.97 ? C3 GOL 201 C 1 HETATM 6 O O3 GOL . . . J 2 -19.246 -1.458 19.295 1 23.64 ? O3 GOL 201 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #