data_5EJH # _model_server_result.job_id lhZeD2WNVid_XQTQl87fBA _model_server_result.datetime_utc '2024-11-13 19:10:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ejh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5EJH # _exptl.entry_id 5EJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EJH _cell.length_a 62.759 _cell.length_b 75.88 _cell.length_c 118.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.759 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.759 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 257 n n PA O2A NAP sing 258 n n PA O5B NAP sing 259 n n PA O3 NAP sing 260 n n O2A HOA2 NAP sing 261 n n O5B C5B NAP sing 262 n n C5B C4B NAP sing 263 n n C5B H51A NAP sing 264 n n C5B H52A NAP sing 265 n n C4B O4B NAP sing 266 n n C4B C3B NAP sing 267 n n C4B H4B NAP sing 268 n n O4B C1B NAP sing 269 n n C3B O3B NAP sing 270 n n C3B C2B NAP sing 271 n n C3B H3B NAP sing 272 n n O3B HO3A NAP sing 273 n n C2B O2B NAP sing 274 n n C2B C1B NAP sing 275 n n C2B H2B NAP sing 276 n n O2B P2B NAP sing 277 n n C1B N9A NAP sing 278 n n C1B H1B NAP sing 279 n n N9A C8A NAP sing 280 n y N9A C4A NAP sing 281 n y C8A N7A NAP doub 282 n y C8A H8A NAP sing 283 n n N7A C5A NAP sing 284 n y C5A C6A NAP sing 285 n y C5A C4A NAP doub 286 n y C6A N6A NAP sing 287 n n C6A N1A NAP doub 288 n y N6A H61A NAP sing 289 n n N6A H62A NAP sing 290 n n N1A C2A NAP sing 291 n y C2A N3A NAP doub 292 n y C2A H2A NAP sing 293 n n N3A C4A NAP sing 294 n y O3 PN NAP sing 295 n n PN O1N NAP doub 296 n n PN O2N NAP sing 297 n n PN O5D NAP sing 298 n n O5D C5D NAP sing 299 n n C5D C4D NAP sing 300 n n C5D H51N NAP sing 301 n n C5D H52N NAP sing 302 n n C4D O4D NAP sing 303 n n C4D C3D NAP sing 304 n n C4D H4D NAP sing 305 n n O4D C1D NAP sing 306 n n C3D O3D NAP sing 307 n n C3D C2D NAP sing 308 n n C3D H3D NAP sing 309 n n O3D HO3N NAP sing 310 n n C2D O2D NAP sing 311 n n C2D C1D NAP sing 312 n n C2D H2D NAP sing 313 n n O2D HO2N NAP sing 314 n n C1D N1N NAP sing 315 n n C1D H1D NAP sing 316 n n N1N C2N NAP sing 317 n y N1N C6N NAP doub 318 n y C2N C3N NAP doub 319 n y C2N H2N NAP sing 320 n n C3N C7N NAP sing 321 n n C3N C4N NAP sing 322 n y C7N O7N NAP doub 323 n n C7N N7N NAP sing 324 n n N7N H71N NAP sing 325 n n N7N H72N NAP sing 326 n n C4N C5N NAP doub 327 n y C4N H4N NAP sing 328 n n C5N C6N NAP sing 329 n y C5N H5N NAP sing 330 n n C6N H6N NAP sing 331 n n P2B O1X NAP doub 332 n n P2B O2X NAP sing 333 n n P2B O3X NAP sing 334 n n O2X HOP2 NAP sing 335 n n O3X HOP3 NAP sing 336 n n # _atom_sites.entry_id 5EJH _atom_sites.fract_transf_matrix[1][1] 0.015934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 1 NAP NAP . C 3 CIT A 1 302 1 CIT CIT . D 4 HOH A 1 401 74 HOH HOH . D 4 HOH A 2 402 138 HOH HOH . D 4 HOH A 3 403 15 HOH HOH . D 4 HOH A 4 404 5 HOH HOH . D 4 HOH A 5 405 105 HOH HOH . D 4 HOH A 6 406 9 HOH HOH . D 4 HOH A 7 407 144 HOH HOH . D 4 HOH A 8 408 142 HOH HOH . D 4 HOH A 9 409 136 HOH HOH . D 4 HOH A 10 410 92 HOH HOH . D 4 HOH A 11 411 111 HOH HOH . D 4 HOH A 12 412 80 HOH HOH . D 4 HOH A 13 413 83 HOH HOH . D 4 HOH A 14 414 56 HOH HOH . D 4 HOH A 15 415 34 HOH HOH . D 4 HOH A 16 416 79 HOH HOH . D 4 HOH A 17 417 44 HOH HOH . D 4 HOH A 18 418 62 HOH HOH . D 4 HOH A 19 419 99 HOH HOH . D 4 HOH A 20 420 32 HOH HOH . D 4 HOH A 21 421 129 HOH HOH . D 4 HOH A 22 422 67 HOH HOH . D 4 HOH A 23 423 63 HOH HOH . D 4 HOH A 24 424 14 HOH HOH . D 4 HOH A 25 425 93 HOH HOH . D 4 HOH A 26 426 126 HOH HOH . D 4 HOH A 27 427 101 HOH HOH . D 4 HOH A 28 428 130 HOH HOH . D 4 HOH A 29 429 90 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 97 HOH HOH . D 4 HOH A 32 432 71 HOH HOH . D 4 HOH A 33 433 57 HOH HOH . D 4 HOH A 34 434 11 HOH HOH . D 4 HOH A 35 435 6 HOH HOH . D 4 HOH A 36 436 139 HOH HOH . D 4 HOH A 37 437 133 HOH HOH . D 4 HOH A 38 438 12 HOH HOH . D 4 HOH A 39 439 55 HOH HOH . D 4 HOH A 40 440 20 HOH HOH . D 4 HOH A 41 441 36 HOH HOH . D 4 HOH A 42 442 87 HOH HOH . D 4 HOH A 43 443 51 HOH HOH . D 4 HOH A 44 444 18 HOH HOH . D 4 HOH A 45 445 78 HOH HOH . D 4 HOH A 46 446 19 HOH HOH . D 4 HOH A 47 447 119 HOH HOH . D 4 HOH A 48 448 94 HOH HOH . D 4 HOH A 49 449 24 HOH HOH . D 4 HOH A 50 450 27 HOH HOH . D 4 HOH A 51 451 10 HOH HOH . D 4 HOH A 52 452 33 HOH HOH . D 4 HOH A 53 453 37 HOH HOH . D 4 HOH A 54 454 140 HOH HOH . D 4 HOH A 55 455 69 HOH HOH . D 4 HOH A 56 456 17 HOH HOH . D 4 HOH A 57 457 21 HOH HOH . D 4 HOH A 58 458 45 HOH HOH . D 4 HOH A 59 459 134 HOH HOH . D 4 HOH A 60 460 43 HOH HOH . D 4 HOH A 61 461 28 HOH HOH . D 4 HOH A 62 462 31 HOH HOH . D 4 HOH A 63 463 52 HOH HOH . D 4 HOH A 64 464 73 HOH HOH . D 4 HOH A 65 465 7 HOH HOH . D 4 HOH A 66 466 128 HOH HOH . D 4 HOH A 67 467 104 HOH HOH . D 4 HOH A 68 468 54 HOH HOH . D 4 HOH A 69 469 29 HOH HOH . D 4 HOH A 70 470 13 HOH HOH . D 4 HOH A 71 471 68 HOH HOH . D 4 HOH A 72 472 76 HOH HOH . D 4 HOH A 73 473 16 HOH HOH . D 4 HOH A 74 474 109 HOH HOH . D 4 HOH A 75 475 42 HOH HOH . D 4 HOH A 76 476 59 HOH HOH . D 4 HOH A 77 477 53 HOH HOH . D 4 HOH A 78 478 22 HOH HOH . D 4 HOH A 79 479 39 HOH HOH . D 4 HOH A 80 480 143 HOH HOH . D 4 HOH A 81 481 60 HOH HOH . D 4 HOH A 82 482 106 HOH HOH . D 4 HOH A 83 483 72 HOH HOH . D 4 HOH A 84 484 70 HOH HOH . D 4 HOH A 85 485 64 HOH HOH . D 4 HOH A 86 486 82 HOH HOH . D 4 HOH A 87 487 107 HOH HOH . D 4 HOH A 88 488 88 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 49 HOH HOH . D 4 HOH A 91 491 8 HOH HOH . D 4 HOH A 92 492 123 HOH HOH . D 4 HOH A 93 493 4 HOH HOH . D 4 HOH A 94 494 77 HOH HOH . D 4 HOH A 95 495 113 HOH HOH . D 4 HOH A 96 496 50 HOH HOH . D 4 HOH A 97 497 131 HOH HOH . D 4 HOH A 98 498 120 HOH HOH . D 4 HOH A 99 499 81 HOH HOH . D 4 HOH A 100 500 108 HOH HOH . D 4 HOH A 101 501 117 HOH HOH . D 4 HOH A 102 502 46 HOH HOH . D 4 HOH A 103 503 23 HOH HOH . D 4 HOH A 104 504 48 HOH HOH . D 4 HOH A 105 505 35 HOH HOH . D 4 HOH A 106 506 65 HOH HOH . D 4 HOH A 107 507 91 HOH HOH . D 4 HOH A 108 508 116 HOH HOH . D 4 HOH A 109 509 2 HOH HOH . D 4 HOH A 110 510 26 HOH HOH . D 4 HOH A 111 511 132 HOH HOH . D 4 HOH A 112 512 40 HOH HOH . D 4 HOH A 113 513 61 HOH HOH . D 4 HOH A 114 514 66 HOH HOH . D 4 HOH A 115 515 38 HOH HOH . D 4 HOH A 116 516 25 HOH HOH . D 4 HOH A 117 517 47 HOH HOH . D 4 HOH A 118 518 118 HOH HOH . D 4 HOH A 119 519 3 HOH HOH . D 4 HOH A 120 520 100 HOH HOH . D 4 HOH A 121 521 102 HOH HOH . D 4 HOH A 122 522 121 HOH HOH . D 4 HOH A 123 523 127 HOH HOH . D 4 HOH A 124 524 84 HOH HOH . D 4 HOH A 125 525 125 HOH HOH . D 4 HOH A 126 526 41 HOH HOH . D 4 HOH A 127 527 122 HOH HOH . D 4 HOH A 128 528 114 HOH HOH . D 4 HOH A 129 529 96 HOH HOH . D 4 HOH A 130 530 110 HOH HOH . D 4 HOH A 131 531 75 HOH HOH . D 4 HOH A 132 532 137 HOH HOH . D 4 HOH A 133 533 98 HOH HOH . D 4 HOH A 134 534 58 HOH HOH . D 4 HOH A 135 535 124 HOH HOH . D 4 HOH A 136 536 85 HOH HOH . D 4 HOH A 137 537 95 HOH HOH . D 4 HOH A 138 538 1 HOH HOH . D 4 HOH A 139 539 103 HOH HOH . D 4 HOH A 140 540 115 HOH HOH . D 4 HOH A 141 541 86 HOH HOH . D 4 HOH A 142 542 112 HOH HOH . D 4 HOH A 143 543 141 HOH HOH . D 4 HOH A 144 544 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 12.935 9.19 13.02 1 161.6 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 13.356 10.612 12.89 1 158.05 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 12.258 9.011 14.318 1 162.32 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 14.22 8.242 12.932 1 63.31 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 15.533 8.912 12.978 1 57.41 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 16.57 7.987 13.58 1 52.33 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 17.972 8.558 13.077 1 44.07 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 16.627 8.151 14.881 1 56.06 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 17.59 7.18 15.496 1 53.11 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 17.187 9.548 14.998 1 58.2 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 17.636 9.819 16.266 1 63.01 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 18.336 9.463 13.935 1 42.08 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 18.622 10.754 13.255 1 32.86 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 17.743 11.703 12.877 1 29.15 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 18.413 12.717 12.315 1 26.93 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 19.772 12.427 12.322 1 24.91 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 20.997 13.058 11.886 1 22.19 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 21.018 14.347 11.235 1 24.86 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 22.156 12.427 12.074 1 26.06 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 22.205 11.212 12.662 1 26 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 21.107 10.589 13.082 1 31.82 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 19.897 11.158 12.926 1 28.71 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 11.926 8.816 11.834 1 114.71 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 12.271 7.882 10.569 1 137.62 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 10.988 7.454 9.892 1 137.01 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 12.994 6.672 10.987 1 134.75 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 13.161 8.711 9.519 1 71.88 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 13.674 10.017 9.849 1 54.84 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 15.053 9.992 9.682 1 44.24 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 15.586 8.548 9.824 1 30.68 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 15.407 10.363 8.21 1 26.45 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 15.463 11.852 8.138 1 19.1 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 16.464 9.662 7.894 1 20.33 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 17.735 10.383 7.863 1 21.08 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 16.548 8.403 8.984 1 31.66 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 16.469 7.179 8.272 1 30.28 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 17.551 6.409 8.213 1 29.5 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 17.479 5.222 7.499 1 25.12 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 18.692 4.309 7.382 1 23.14 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 19.717 4.616 7.924 1 27.74 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 18.571 3.075 6.576 1 19.71 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 16.255 4.875 6.871 1 26.59 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 15.128 5.712 6.958 1 33.92 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 15.318 6.866 7.689 1 34.21 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 16.613 9.978 17.549 1 56.96 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 17.162 11.107 18.416 1 60.65 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 16.621 8.706 18.368 1 61.33 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 15.176 10.321 17.129 1 47.19 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 48 #