data_5EJH # _model_server_result.job_id kcrAgg2ZPA_UwJjXY9PqEQ _model_server_result.datetime_utc '2024-11-25 05:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ejh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 5EJH # _exptl.entry_id 5EJH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EJH _cell.length_a 62.759 _cell.length_b 75.88 _cell.length_c 118.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EJH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 62.759 0 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 62.759 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 5EJH _atom_sites.fract_transf_matrix[1][1] 0.015934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 1 NAP NAP . C 3 CIT A 1 302 1 CIT CIT . D 4 HOH A 1 401 74 HOH HOH . D 4 HOH A 2 402 138 HOH HOH . D 4 HOH A 3 403 15 HOH HOH . D 4 HOH A 4 404 5 HOH HOH . D 4 HOH A 5 405 105 HOH HOH . D 4 HOH A 6 406 9 HOH HOH . D 4 HOH A 7 407 144 HOH HOH . D 4 HOH A 8 408 142 HOH HOH . D 4 HOH A 9 409 136 HOH HOH . D 4 HOH A 10 410 92 HOH HOH . D 4 HOH A 11 411 111 HOH HOH . D 4 HOH A 12 412 80 HOH HOH . D 4 HOH A 13 413 83 HOH HOH . D 4 HOH A 14 414 56 HOH HOH . D 4 HOH A 15 415 34 HOH HOH . D 4 HOH A 16 416 79 HOH HOH . D 4 HOH A 17 417 44 HOH HOH . D 4 HOH A 18 418 62 HOH HOH . D 4 HOH A 19 419 99 HOH HOH . D 4 HOH A 20 420 32 HOH HOH . D 4 HOH A 21 421 129 HOH HOH . D 4 HOH A 22 422 67 HOH HOH . D 4 HOH A 23 423 63 HOH HOH . D 4 HOH A 24 424 14 HOH HOH . D 4 HOH A 25 425 93 HOH HOH . D 4 HOH A 26 426 126 HOH HOH . D 4 HOH A 27 427 101 HOH HOH . D 4 HOH A 28 428 130 HOH HOH . D 4 HOH A 29 429 90 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . D 4 HOH A 31 431 97 HOH HOH . D 4 HOH A 32 432 71 HOH HOH . D 4 HOH A 33 433 57 HOH HOH . D 4 HOH A 34 434 11 HOH HOH . D 4 HOH A 35 435 6 HOH HOH . D 4 HOH A 36 436 139 HOH HOH . D 4 HOH A 37 437 133 HOH HOH . D 4 HOH A 38 438 12 HOH HOH . D 4 HOH A 39 439 55 HOH HOH . D 4 HOH A 40 440 20 HOH HOH . D 4 HOH A 41 441 36 HOH HOH . D 4 HOH A 42 442 87 HOH HOH . D 4 HOH A 43 443 51 HOH HOH . D 4 HOH A 44 444 18 HOH HOH . D 4 HOH A 45 445 78 HOH HOH . D 4 HOH A 46 446 19 HOH HOH . D 4 HOH A 47 447 119 HOH HOH . D 4 HOH A 48 448 94 HOH HOH . D 4 HOH A 49 449 24 HOH HOH . D 4 HOH A 50 450 27 HOH HOH . D 4 HOH A 51 451 10 HOH HOH . D 4 HOH A 52 452 33 HOH HOH . D 4 HOH A 53 453 37 HOH HOH . D 4 HOH A 54 454 140 HOH HOH . D 4 HOH A 55 455 69 HOH HOH . D 4 HOH A 56 456 17 HOH HOH . D 4 HOH A 57 457 21 HOH HOH . D 4 HOH A 58 458 45 HOH HOH . D 4 HOH A 59 459 134 HOH HOH . D 4 HOH A 60 460 43 HOH HOH . D 4 HOH A 61 461 28 HOH HOH . D 4 HOH A 62 462 31 HOH HOH . D 4 HOH A 63 463 52 HOH HOH . D 4 HOH A 64 464 73 HOH HOH . D 4 HOH A 65 465 7 HOH HOH . D 4 HOH A 66 466 128 HOH HOH . D 4 HOH A 67 467 104 HOH HOH . D 4 HOH A 68 468 54 HOH HOH . D 4 HOH A 69 469 29 HOH HOH . D 4 HOH A 70 470 13 HOH HOH . D 4 HOH A 71 471 68 HOH HOH . D 4 HOH A 72 472 76 HOH HOH . D 4 HOH A 73 473 16 HOH HOH . D 4 HOH A 74 474 109 HOH HOH . D 4 HOH A 75 475 42 HOH HOH . D 4 HOH A 76 476 59 HOH HOH . D 4 HOH A 77 477 53 HOH HOH . D 4 HOH A 78 478 22 HOH HOH . D 4 HOH A 79 479 39 HOH HOH . D 4 HOH A 80 480 143 HOH HOH . D 4 HOH A 81 481 60 HOH HOH . D 4 HOH A 82 482 106 HOH HOH . D 4 HOH A 83 483 72 HOH HOH . D 4 HOH A 84 484 70 HOH HOH . D 4 HOH A 85 485 64 HOH HOH . D 4 HOH A 86 486 82 HOH HOH . D 4 HOH A 87 487 107 HOH HOH . D 4 HOH A 88 488 88 HOH HOH . D 4 HOH A 89 489 89 HOH HOH . D 4 HOH A 90 490 49 HOH HOH . D 4 HOH A 91 491 8 HOH HOH . D 4 HOH A 92 492 123 HOH HOH . D 4 HOH A 93 493 4 HOH HOH . D 4 HOH A 94 494 77 HOH HOH . D 4 HOH A 95 495 113 HOH HOH . D 4 HOH A 96 496 50 HOH HOH . D 4 HOH A 97 497 131 HOH HOH . D 4 HOH A 98 498 120 HOH HOH . D 4 HOH A 99 499 81 HOH HOH . D 4 HOH A 100 500 108 HOH HOH . D 4 HOH A 101 501 117 HOH HOH . D 4 HOH A 102 502 46 HOH HOH . D 4 HOH A 103 503 23 HOH HOH . D 4 HOH A 104 504 48 HOH HOH . D 4 HOH A 105 505 35 HOH HOH . D 4 HOH A 106 506 65 HOH HOH . D 4 HOH A 107 507 91 HOH HOH . D 4 HOH A 108 508 116 HOH HOH . D 4 HOH A 109 509 2 HOH HOH . D 4 HOH A 110 510 26 HOH HOH . D 4 HOH A 111 511 132 HOH HOH . D 4 HOH A 112 512 40 HOH HOH . D 4 HOH A 113 513 61 HOH HOH . D 4 HOH A 114 514 66 HOH HOH . D 4 HOH A 115 515 38 HOH HOH . D 4 HOH A 116 516 25 HOH HOH . D 4 HOH A 117 517 47 HOH HOH . D 4 HOH A 118 518 118 HOH HOH . D 4 HOH A 119 519 3 HOH HOH . D 4 HOH A 120 520 100 HOH HOH . D 4 HOH A 121 521 102 HOH HOH . D 4 HOH A 122 522 121 HOH HOH . D 4 HOH A 123 523 127 HOH HOH . D 4 HOH A 124 524 84 HOH HOH . D 4 HOH A 125 525 125 HOH HOH . D 4 HOH A 126 526 41 HOH HOH . D 4 HOH A 127 527 122 HOH HOH . D 4 HOH A 128 528 114 HOH HOH . D 4 HOH A 129 529 96 HOH HOH . D 4 HOH A 130 530 110 HOH HOH . D 4 HOH A 131 531 75 HOH HOH . D 4 HOH A 132 532 137 HOH HOH . D 4 HOH A 133 533 98 HOH HOH . D 4 HOH A 134 534 58 HOH HOH . D 4 HOH A 135 535 124 HOH HOH . D 4 HOH A 136 536 85 HOH HOH . D 4 HOH A 137 537 95 HOH HOH . D 4 HOH A 138 538 1 HOH HOH . D 4 HOH A 139 539 103 HOH HOH . D 4 HOH A 140 540 115 HOH HOH . D 4 HOH A 141 541 86 HOH HOH . D 4 HOH A 142 542 112 HOH HOH . D 4 HOH A 143 543 141 HOH HOH . D 4 HOH A 144 544 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 31.775 24.064 14.167 1 42.62 ? C1 CIT 302 A 1 HETATM 2 O O1 CIT . . . C 3 31.603 22.869 13.849 1 34.7 ? O1 CIT 302 A 1 HETATM 3 O O2 CIT . . . C 3 32.873 24.378 14.683 1 44.94 ? O2 CIT 302 A 1 HETATM 4 C C2 CIT . . . C 3 30.696 25.107 13.949 1 47.55 ? C2 CIT 302 A 1 HETATM 5 C C3 CIT . . . C 3 29.404 24.734 14.674 0.22 51.38 ? C3 CIT 302 A 1 HETATM 6 O O7 CIT . . . C 3 29.688 24.316 16.033 0.57 52.94 ? O7 CIT 302 A 1 HETATM 7 C C4 CIT . . . C 3 28.414 25.895 14.65 0.77 55.32 ? C4 CIT 302 A 1 HETATM 8 C C5 CIT . A . C 3 29.154 27.212 14.695 0.46 57.44 ? C5 CIT 302 A 1 HETATM 9 C C5 CIT . B . C 3 28.393 26.632 15.969 0.54 58.19 ? C5 CIT 302 A 1 HETATM 10 O O3 CIT . A . C 3 29.189 27.958 13.689 0.46 56.87 ? O3 CIT 302 A 1 HETATM 11 O O3 CIT . B . C 3 27.8 26.136 16.947 0.54 57.4 ? O3 CIT 302 A 1 HETATM 12 O O4 CIT . A . C 3 29.738 27.578 15.739 0.46 57.98 ? O4 CIT 302 A 1 HETATM 13 O O4 CIT . B . C 3 28.955 27.747 16.089 0.54 58.53 ? O4 CIT 302 A 1 HETATM 14 C C6 CIT . . . C 3 28.725 23.587 13.957 0.52 50.1 ? C6 CIT 302 A 1 HETATM 15 O O5 CIT . . . C 3 28.696 23.56 12.708 0.63 52.6 ? O5 CIT 302 A 1 HETATM 16 O O6 CIT . . . C 3 28.211 22.658 14.617 0.73 46.41 ? O6 CIT 302 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #