data_5EJI
#
_model_server_result.job_id            XWGodin6BaABqqu8Gc3KLw 
_model_server_result.datetime_utc      '2024-11-15 01:26:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5eji 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    5EJI 
#
_exptl.entry_id    5EJI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EJI 
_cell.length_a            63.466 
_cell.length_b            74.389 
_cell.length_c            119.012 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EJI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 63.466 0 0 
3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 63.466 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O1A NAP . A NAP 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? 
metalc ? metalc2 B O3X NAP . A NAP 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc3 C MN MN . A MN 302 1_555 D O4 POP . A POP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc4 C MN MN . A MN 302 1_555 D O POP . A POP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     5EJI 
_atom_sites.fract_transf_matrix[1][1]    0.015756 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013443 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008402 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 301 1 NAP NAP . 
C 3 MN A 1 302 1 MN MN . 
D 4 POP A 1 303 1 POP POP . 
E 5 CIT A 1 304 1 CIT CIT . 
F 6 HOH A 1 401 21 HOH HOH . 
F 6 HOH A 2 402 29 HOH HOH . 
F 6 HOH A 3 403 8 HOH HOH . 
F 6 HOH A 4 404 7 HOH HOH . 
F 6 HOH A 5 405 20 HOH HOH . 
F 6 HOH A 6 406 5 HOH HOH . 
F 6 HOH A 7 407 16 HOH HOH . 
F 6 HOH A 8 408 12 HOH HOH . 
F 6 HOH A 9 409 13 HOH HOH . 
F 6 HOH A 10 410 26 HOH HOH . 
F 6 HOH A 11 411 28 HOH HOH . 
F 6 HOH A 12 412 27 HOH HOH . 
F 6 HOH A 13 413 30 HOH HOH . 
F 6 HOH A 14 414 6 HOH HOH . 
F 6 HOH A 15 415 23 HOH HOH . 
F 6 HOH A 16 416 3 HOH HOH . 
F 6 HOH A 17 417 10 HOH HOH . 
F 6 HOH A 18 418 15 HOH HOH . 
F 6 HOH A 19 419 9 HOH HOH . 
F 6 HOH A 20 420 17 HOH HOH . 
F 6 HOH A 21 421 14 HOH HOH . 
F 6 HOH A 22 422 4 HOH HOH . 
F 6 HOH A 23 423 11 HOH HOH . 
F 6 HOH A 24 424 24 HOH HOH . 
F 6 HOH A 25 425 2 HOH HOH . 
F 6 HOH A 26 426 33 HOH HOH . 
F 6 HOH A 27 427 31 HOH HOH . 
F 6 HOH A 28 428 1 HOH HOH . 
F 6 HOH A 29 429 19 HOH HOH . 
F 6 HOH A 30 430 32 HOH HOH . 
F 6 HOH A 31 431 22 HOH HOH . 
F 6 HOH A 32 432 34 HOH HOH . 
F 6 HOH A 33 433 18 HOH HOH . 
F 6 HOH A 34 434 25 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . E 5 29.097 24.594 14.871 0.87 57.2 ? C1 CIT 304 A 1 
HETATM 2 O O1 CIT . . . E 5 28.709 23.909 13.884 0.87 52.18 ? O1 CIT 304 A 1 
HETATM 3 O O2 CIT . . . E 5 28.503 24.435 15.954 0.87 57.61 ? O2 CIT 304 A 1 
HETATM 4 C C2 CIT . . . E 5 30.236 25.594 14.808 0.87 57.2 ? C2 CIT 304 A 1 
HETATM 5 C C3 CIT . . . E 5 31.312 25.245 13.766 0.87 62.15 ? C3 CIT 304 A 1 
HETATM 6 O O7 CIT . . . E 5 30.621 24.961 12.52 0.87 63.15 ? O7 CIT 304 A 1 
HETATM 7 C C4 CIT . . . E 5 32.248 26.435 13.551 0.87 65.28 ? C4 CIT 304 A 1 
HETATM 8 C C5 CIT . . . E 5 33.142 26.331 12.328 0.87 65.33 ? C5 CIT 304 A 1 
HETATM 9 O O3 CIT . . . E 5 32.968 27.096 11.355 0.87 68.58 ? O3 CIT 304 A 1 
HETATM 10 O O4 CIT . . . E 5 34.087 25.511 12.279 0.87 64.08 ? O4 CIT 304 A 1 
HETATM 11 C C6 CIT . . . E 5 32.168 24.071 14.246 0.87 58.62 ? C6 CIT 304 A 1 
HETATM 12 O O5 CIT . . . E 5 31.968 22.886 13.89 0.87 55.07 ? O5 CIT 304 A 1 
HETATM 13 O O6 CIT . . . E 5 33.112 24.291 15.04 0.87 62.23 ? O6 CIT 304 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           13 
#