data_5EJL # _model_server_result.job_id t-hBKpauJz455cfYIppDtw _model_server_result.datetime_utc '2024-11-09 02:49:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ejl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":308}' # _entry.id 5EJL # _exptl.entry_id 5EJL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EJL _cell.length_a 68.556 _cell.length_b 68.556 _cell.length_c 179.457 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EJL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 159 n n C1 C2 EDO sing 160 n n C1 H11 EDO sing 161 n n C1 H12 EDO sing 162 n n O1 HO1 EDO sing 163 n n C2 O2 EDO sing 164 n n C2 H21 EDO sing 165 n n C2 H22 EDO sing 166 n n O2 HO2 EDO sing 167 n n # _atom_sites.entry_id 5EJL _atom_sites.fract_transf_matrix[1][1] 0.014587 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014587 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005572 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C2E A 1 301 800 C2E C2E . C 2 C2E A 1 302 801 C2E C2E . D 3 SO4 A 1 303 803 SO4 SO4 . E 3 SO4 A 1 304 804 SO4 SO4 . F 3 SO4 A 1 305 805 SO4 SO4 . G 4 EDO A 1 306 806 EDO EDO . H 4 EDO A 1 307 807 EDO EDO . I 4 EDO A 1 308 808 EDO EDO . J 5 HOH A 1 401 67 HOH HOH . J 5 HOH A 2 402 28 HOH HOH . J 5 HOH A 3 403 16 HOH HOH . J 5 HOH A 4 404 63 HOH HOH . J 5 HOH A 5 405 70 HOH HOH . J 5 HOH A 6 406 86 HOH HOH . J 5 HOH A 7 407 66 HOH HOH . J 5 HOH A 8 408 85 HOH HOH . J 5 HOH A 9 409 58 HOH HOH . J 5 HOH A 10 410 19 HOH HOH . J 5 HOH A 11 411 84 HOH HOH . J 5 HOH A 12 412 68 HOH HOH . J 5 HOH A 13 413 88 HOH HOH . J 5 HOH A 14 414 62 HOH HOH . J 5 HOH A 15 415 2 HOH HOH . J 5 HOH A 16 416 30 HOH HOH . J 5 HOH A 17 417 4 HOH HOH . J 5 HOH A 18 418 81 HOH HOH . J 5 HOH A 19 419 12 HOH HOH . J 5 HOH A 20 420 33 HOH HOH . J 5 HOH A 21 421 36 HOH HOH . J 5 HOH A 22 422 59 HOH HOH . J 5 HOH A 23 423 71 HOH HOH . J 5 HOH A 24 424 53 HOH HOH . J 5 HOH A 25 425 25 HOH HOH . J 5 HOH A 26 426 8 HOH HOH . J 5 HOH A 27 427 1 HOH HOH . J 5 HOH A 28 428 15 HOH HOH . J 5 HOH A 29 429 29 HOH HOH . J 5 HOH A 30 430 41 HOH HOH . J 5 HOH A 31 431 47 HOH HOH . J 5 HOH A 32 432 18 HOH HOH . J 5 HOH A 33 433 3 HOH HOH . J 5 HOH A 34 434 49 HOH HOH . J 5 HOH A 35 435 31 HOH HOH . J 5 HOH A 36 436 6 HOH HOH . J 5 HOH A 37 437 13 HOH HOH . J 5 HOH A 38 438 38 HOH HOH . J 5 HOH A 39 439 21 HOH HOH . J 5 HOH A 40 440 22 HOH HOH . J 5 HOH A 41 441 40 HOH HOH . J 5 HOH A 42 442 23 HOH HOH . J 5 HOH A 43 443 9 HOH HOH . J 5 HOH A 44 444 26 HOH HOH . J 5 HOH A 45 445 44 HOH HOH . J 5 HOH A 46 446 52 HOH HOH . J 5 HOH A 47 447 10 HOH HOH . J 5 HOH A 48 448 51 HOH HOH . J 5 HOH A 49 449 45 HOH HOH . J 5 HOH A 50 450 24 HOH HOH . J 5 HOH A 51 451 54 HOH HOH . J 5 HOH A 52 452 76 HOH HOH . J 5 HOH A 53 453 60 HOH HOH . J 5 HOH A 54 454 46 HOH HOH . J 5 HOH A 55 455 32 HOH HOH . J 5 HOH A 56 456 20 HOH HOH . J 5 HOH A 57 457 75 HOH HOH . J 5 HOH A 58 458 80 HOH HOH . J 5 HOH A 59 459 42 HOH HOH . J 5 HOH A 60 460 7 HOH HOH . J 5 HOH A 61 461 35 HOH HOH . J 5 HOH A 62 462 27 HOH HOH . J 5 HOH A 63 463 48 HOH HOH . J 5 HOH A 64 464 77 HOH HOH . J 5 HOH A 65 465 56 HOH HOH . J 5 HOH A 66 466 55 HOH HOH . J 5 HOH A 67 467 43 HOH HOH . J 5 HOH A 68 468 39 HOH HOH . J 5 HOH A 69 469 57 HOH HOH . J 5 HOH A 70 470 64 HOH HOH . J 5 HOH A 71 471 37 HOH HOH . J 5 HOH A 72 472 69 HOH HOH . J 5 HOH A 73 473 14 HOH HOH . J 5 HOH A 74 474 17 HOH HOH . J 5 HOH A 75 475 78 HOH HOH . J 5 HOH A 76 476 34 HOH HOH . J 5 HOH A 77 477 72 HOH HOH . J 5 HOH A 78 478 65 HOH HOH . J 5 HOH A 79 479 87 HOH HOH . J 5 HOH A 80 480 61 HOH HOH . J 5 HOH A 81 481 79 HOH HOH . J 5 HOH A 82 482 5 HOH HOH . J 5 HOH A 83 483 82 HOH HOH . J 5 HOH A 84 484 74 HOH HOH . J 5 HOH A 85 485 11 HOH HOH . J 5 HOH A 86 486 73 HOH HOH . J 5 HOH A 87 487 50 HOH HOH . J 5 HOH A 88 488 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 4 -2.556 8.677 35.851 1 65.36 ? C1 EDO 308 A 1 HETATM 2 O O1 EDO . . . I 4 -1.647 8.044 36.759 1 69.68 ? O1 EDO 308 A 1 HETATM 3 C C2 EDO . . . I 4 -2.21 8.25 34.431 1 71.26 ? C2 EDO 308 A 1 HETATM 4 O O2 EDO . . . I 4 -3.278 8.62 33.551 1 74.96 ? O2 EDO 308 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #