data_5EJN # _model_server_result.job_id m37EnAvohPMo2b1pxYubfw _model_server_result.datetime_utc '2025-03-06 01:30:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ejn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 5EJN # _exptl.entry_id 5EJN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EJN _cell.length_a 38.1 _cell.length_b 52.2 _cell.length_c 87.5 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EJN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A 1 1 B,C 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 14 A CYS 27 1_555 A SG CYS 42 A CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 34 A CYS 47 1_555 A SG CYS 82 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 43 A CYS 56 1_555 A SG CYS 86 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 66 A CYS 79 1_555 A SG CYS 153 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 A SG CYS 73 A CYS 86 1_555 A SG CYS 124 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 A SG CYS 113 A CYS 126 1_555 A SG CYS 187 A CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 117 A CYS 130 1_555 A SG CYS 167 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf8 B SG CYS 14 B CYS 27 1_555 B SG CYS 42 B CYS 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 B SG CYS 34 B CYS 47 1_555 B SG CYS 82 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf10 B SG CYS 43 B CYS 56 1_555 B SG CYS 86 B CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 73 B CYS 86 1_555 B SG CYS 124 B CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 B SG CYS 113 B CYS 126 1_555 B SG CYS 187 B CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 117 B CYS 130 1_555 B SG CYS 167 B CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 172 B ASN 185 1_555 C C1 NAG . B NAG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5EJN _atom_sites.fract_transf_matrix[1][1] 0.026247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 2 12.332 -38.389 45.907 1 102.57 ? C1 NAG 300 B 1 HETATM 2 C C2 NAG . . . C 2 10.955 -38.994 45.736 1 82.89 ? C2 NAG 300 B 1 HETATM 3 C C3 NAG . . . C 2 11.045 -40.506 45.847 1 90.52 ? C3 NAG 300 B 1 HETATM 4 C C4 NAG . . . C 2 12.038 -41.051 44.832 1 115.1 ? C4 NAG 300 B 1 HETATM 5 C C5 NAG . . . C 2 13.383 -40.332 44.927 1 78.94 ? C5 NAG 300 B 1 HETATM 6 C C6 NAG . . . C 2 14.278 -40.636 43.749 1 77.6 ? C6 NAG 300 B 1 HETATM 7 C C7 NAG . . . C 2 8.754 -38.131 46.372 1 82.29 ? C7 NAG 300 B 1 HETATM 8 C C8 NAG . . . C 2 7.894 -37.624 47.491 1 84.69 ? C8 NAG 300 B 1 HETATM 9 N N2 NAG . . . C 2 10.007 -38.467 46.697 1 81.54 ? N2 NAG 300 B 1 HETATM 10 O O3 NAG . . . C 2 9.76 -41.07 45.612 1 99.27 ? O3 NAG 300 B 1 HETATM 11 O O4 NAG . . . C 2 12.25 -42.435 45.081 1 150.98 ? O4 NAG 300 B 1 HETATM 12 O O5 NAG . . . C 2 13.21 -38.906 44.929 1 76.44 ? O5 NAG 300 B 1 HETATM 13 O O6 NAG . . . C 2 15.216 -39.59 43.538 1 74.95 ? O6 NAG 300 B 1 HETATM 14 O O7 NAG . . . C 2 8.333 -38.235 45.223 1 81.48 ? O7 NAG 300 B 1 HETATM 15 H H1 NAG . . . C 2 12.67 -38.657 46.788 1 123.08 ? H1 NAG 300 B 1 HETATM 16 H H2 NAG . . . C 2 10.64 -38.779 44.838 1 99.47 ? H2 NAG 300 B 1 HETATM 17 H H3 NAG . . . C 2 11.341 -40.745 46.746 1 108.62 ? H3 NAG 300 B 1 HETATM 18 H H4 NAG . . . C 2 11.674 -40.938 43.934 1 138.12 ? H4 NAG 300 B 1 HETATM 19 H H5 NAG . . . C 2 13.833 -40.602 45.75 1 94.73 ? H5 NAG 300 B 1 HETATM 20 H H61 NAG . . . C 2 13.731 -40.738 42.948 1 93.12 ? H61 NAG 300 B 1 HETATM 21 H H62 NAG . . . C 2 14.757 -41.469 43.917 1 93.12 ? H62 NAG 300 B 1 HETATM 22 H H81 NAG . . . C 2 8.426 -37.061 48.084 1 101.63 ? H81 NAG 300 B 1 HETATM 23 H H82 NAG . . . C 2 7.537 -38.38 47.995 1 101.63 ? H82 NAG 300 B 1 HETATM 24 H H83 NAG . . . C 2 7.156 -37.102 47.123 1 101.63 ? H83 NAG 300 B 1 HETATM 25 H HN2 NAG . . . C 2 10.27 -38.38 47.566 1 97.85 ? HN2 NAG 300 B 1 HETATM 26 H HO3 NAG . . . C 2 9.443 -40.773 44.837 1 119.12 ? HO3 NAG 300 B 1 HETATM 27 H HO4 NAG . . . C 2 12.53 -42.546 45.916 1 181.18 ? HO4 NAG 300 B 1 HETATM 28 H HO6 NAG . . . C 2 14.995 -38.889 44.037 1 89.95 ? HO6 NAG 300 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #