data_5EJR # _model_server_result.job_id Z2Ryi3ZsE-XhbVgyvYKsTA _model_server_result.datetime_utc '2025-04-03 14:39:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ejr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2405}' # _entry.id 5EJR # _exptl.entry_id 5EJR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90.07 _cell.angle_beta 96.78 _cell.angle_gamma 108.48 _cell.entry_id 5EJR _cell.length_a 40.02 _cell.length_b 58.95 _cell.length_c 64.36 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EJR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5EJR _atom_sites.fract_transf_matrix[1][1] 0.024988 _atom_sites.fract_transf_matrix[1][2] 0.008351 _atom_sites.fract_transf_matrix[1][3] 0.003316 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017886 _atom_sites.fract_transf_matrix[2][3] 0.000734 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 2401 1 EDO EDO . C 2 EDO A 1 2402 2 EDO EDO . D 2 EDO A 1 2403 3 EDO EDO . E 2 EDO A 1 2404 4 EDO EDO . F 2 EDO A 1 2405 5 EDO EDO . G 2 EDO A 1 2406 7 EDO EDO . H 2 EDO A 1 2407 8 EDO EDO . I 3 HOH A 1 2501 279 HOH HOH . I 3 HOH A 2 2502 275 HOH HOH . I 3 HOH A 3 2503 280 HOH HOH . I 3 HOH A 4 2504 276 HOH HOH . I 3 HOH A 5 2505 282 HOH HOH . I 3 HOH A 6 2506 167 HOH HOH . I 3 HOH A 7 2507 187 HOH HOH . I 3 HOH A 8 2508 7 HOH HOH . I 3 HOH A 9 2509 18 HOH HOH . I 3 HOH A 10 2510 160 HOH HOH . I 3 HOH A 11 2511 201 HOH HOH . I 3 HOH A 12 2512 15 HOH HOH . I 3 HOH A 13 2513 244 HOH HOH . I 3 HOH A 14 2514 112 HOH HOH . I 3 HOH A 15 2515 84 HOH HOH . I 3 HOH A 16 2516 27 HOH HOH . I 3 HOH A 17 2517 277 HOH HOH . I 3 HOH A 18 2518 296 HOH HOH . I 3 HOH A 19 2519 10 HOH HOH . I 3 HOH A 20 2520 48 HOH HOH . I 3 HOH A 21 2521 195 HOH HOH . I 3 HOH A 22 2522 213 HOH HOH . I 3 HOH A 23 2523 291 HOH HOH . I 3 HOH A 24 2524 23 HOH HOH . I 3 HOH A 25 2525 126 HOH HOH . I 3 HOH A 26 2526 45 HOH HOH . I 3 HOH A 27 2527 293 HOH HOH . I 3 HOH A 28 2528 131 HOH HOH . I 3 HOH A 29 2529 30 HOH HOH . I 3 HOH A 30 2530 60 HOH HOH . I 3 HOH A 31 2531 13 HOH HOH . I 3 HOH A 32 2532 21 HOH HOH . I 3 HOH A 33 2533 281 HOH HOH . I 3 HOH A 34 2534 168 HOH HOH . I 3 HOH A 35 2535 286 HOH HOH . I 3 HOH A 36 2536 17 HOH HOH . I 3 HOH A 37 2537 33 HOH HOH . I 3 HOH A 38 2538 39 HOH HOH . I 3 HOH A 39 2539 65 HOH HOH . I 3 HOH A 40 2540 12 HOH HOH . I 3 HOH A 41 2541 6 HOH HOH . I 3 HOH A 42 2542 177 HOH HOH . I 3 HOH A 43 2543 64 HOH HOH . I 3 HOH A 44 2544 262 HOH HOH . I 3 HOH A 45 2545 79 HOH HOH . I 3 HOH A 46 2546 5 HOH HOH . I 3 HOH A 47 2547 287 HOH HOH . I 3 HOH A 48 2548 230 HOH HOH . I 3 HOH A 49 2549 11 HOH HOH . I 3 HOH A 50 2550 267 HOH HOH . I 3 HOH A 51 2551 298 HOH HOH . I 3 HOH A 52 2552 143 HOH HOH . I 3 HOH A 53 2553 4 HOH HOH . I 3 HOH A 54 2554 158 HOH HOH . I 3 HOH A 55 2555 161 HOH HOH . I 3 HOH A 56 2556 43 HOH HOH . I 3 HOH A 57 2557 162 HOH HOH . I 3 HOH A 58 2558 44 HOH HOH . I 3 HOH A 59 2559 28 HOH HOH . I 3 HOH A 60 2560 129 HOH HOH . I 3 HOH A 61 2561 159 HOH HOH . I 3 HOH A 62 2562 299 HOH HOH . I 3 HOH A 63 2563 51 HOH HOH . I 3 HOH A 64 2564 140 HOH HOH . I 3 HOH A 65 2565 214 HOH HOH . I 3 HOH A 66 2566 80 HOH HOH . I 3 HOH A 67 2567 173 HOH HOH . I 3 HOH A 68 2568 96 HOH HOH . I 3 HOH A 69 2569 26 HOH HOH . I 3 HOH A 70 2570 142 HOH HOH . I 3 HOH A 71 2571 163 HOH HOH . I 3 HOH A 72 2572 268 HOH HOH . I 3 HOH A 73 2573 56 HOH HOH . I 3 HOH A 74 2574 90 HOH HOH . I 3 HOH A 75 2575 181 HOH HOH . I 3 HOH A 76 2576 180 HOH HOH . I 3 HOH A 77 2577 54 HOH HOH . I 3 HOH A 78 2578 138 HOH HOH . I 3 HOH A 79 2579 36 HOH HOH . I 3 HOH A 80 2580 242 HOH HOH . I 3 HOH A 81 2581 190 HOH HOH . I 3 HOH A 82 2582 8 HOH HOH . I 3 HOH A 83 2583 292 HOH HOH . I 3 HOH A 84 2584 70 HOH HOH . I 3 HOH A 85 2585 205 HOH HOH . I 3 HOH A 86 2586 216 HOH HOH . I 3 HOH A 87 2587 106 HOH HOH . I 3 HOH A 88 2588 164 HOH HOH . I 3 HOH A 89 2589 68 HOH HOH . I 3 HOH A 90 2590 107 HOH HOH . I 3 HOH A 91 2591 34 HOH HOH . I 3 HOH A 92 2592 172 HOH HOH . I 3 HOH A 93 2593 58 HOH HOH . I 3 HOH A 94 2594 116 HOH HOH . I 3 HOH A 95 2595 255 HOH HOH . I 3 HOH A 96 2596 20 HOH HOH . I 3 HOH A 97 2597 1 HOH HOH . I 3 HOH A 98 2598 118 HOH HOH . I 3 HOH A 99 2599 120 HOH HOH . I 3 HOH A 100 2600 35 HOH HOH . I 3 HOH A 101 2601 61 HOH HOH . I 3 HOH A 102 2602 3 HOH HOH . I 3 HOH A 103 2603 273 HOH HOH . I 3 HOH A 104 2604 38 HOH HOH . I 3 HOH A 105 2605 176 HOH HOH . I 3 HOH A 106 2606 132 HOH HOH . I 3 HOH A 107 2607 265 HOH HOH . I 3 HOH A 108 2608 241 HOH HOH . I 3 HOH A 109 2609 109 HOH HOH . I 3 HOH A 110 2610 63 HOH HOH . I 3 HOH A 111 2611 73 HOH HOH . I 3 HOH A 112 2612 246 HOH HOH . I 3 HOH A 113 2613 62 HOH HOH . I 3 HOH A 114 2614 239 HOH HOH . I 3 HOH A 115 2615 184 HOH HOH . I 3 HOH A 116 2616 149 HOH HOH . I 3 HOH A 117 2617 46 HOH HOH . I 3 HOH A 118 2618 57 HOH HOH . I 3 HOH A 119 2619 189 HOH HOH . I 3 HOH A 120 2620 104 HOH HOH . I 3 HOH A 121 2621 169 HOH HOH . I 3 HOH A 122 2622 234 HOH HOH . I 3 HOH A 123 2623 19 HOH HOH . I 3 HOH A 124 2624 103 HOH HOH . I 3 HOH A 125 2625 203 HOH HOH . I 3 HOH A 126 2626 98 HOH HOH . I 3 HOH A 127 2627 77 HOH HOH . I 3 HOH A 128 2628 50 HOH HOH . I 3 HOH A 129 2629 81 HOH HOH . I 3 HOH A 130 2630 53 HOH HOH . I 3 HOH A 131 2631 69 HOH HOH . I 3 HOH A 132 2632 141 HOH HOH . I 3 HOH A 133 2633 2 HOH HOH . I 3 HOH A 134 2634 31 HOH HOH . I 3 HOH A 135 2635 174 HOH HOH . I 3 HOH A 136 2636 92 HOH HOH . I 3 HOH A 137 2637 148 HOH HOH . I 3 HOH A 138 2638 52 HOH HOH . I 3 HOH A 139 2639 224 HOH HOH . I 3 HOH A 140 2640 186 HOH HOH . I 3 HOH A 141 2641 89 HOH HOH . I 3 HOH A 142 2642 258 HOH HOH . I 3 HOH A 143 2643 260 HOH HOH . I 3 HOH A 144 2644 121 HOH HOH . I 3 HOH A 145 2645 115 HOH HOH . I 3 HOH A 146 2646 105 HOH HOH . I 3 HOH A 147 2647 175 HOH HOH . I 3 HOH A 148 2648 102 HOH HOH . I 3 HOH A 149 2649 209 HOH HOH . I 3 HOH A 150 2650 25 HOH HOH . I 3 HOH A 151 2651 41 HOH HOH . I 3 HOH A 152 2652 32 HOH HOH . I 3 HOH A 153 2653 40 HOH HOH . I 3 HOH A 154 2654 165 HOH HOH . I 3 HOH A 155 2655 122 HOH HOH . I 3 HOH A 156 2656 93 HOH HOH . I 3 HOH A 157 2657 22 HOH HOH . I 3 HOH A 158 2658 223 HOH HOH . I 3 HOH A 159 2659 14 HOH HOH . I 3 HOH A 160 2660 47 HOH HOH . I 3 HOH A 161 2661 108 HOH HOH . I 3 HOH A 162 2662 251 HOH HOH . I 3 HOH A 163 2663 88 HOH HOH . I 3 HOH A 164 2664 123 HOH HOH . I 3 HOH A 165 2665 212 HOH HOH . I 3 HOH A 166 2666 179 HOH HOH . I 3 HOH A 167 2667 16 HOH HOH . I 3 HOH A 168 2668 238 HOH HOH . I 3 HOH A 169 2669 211 HOH HOH . I 3 HOH A 170 2670 37 HOH HOH . I 3 HOH A 171 2671 55 HOH HOH . I 3 HOH A 172 2672 200 HOH HOH . I 3 HOH A 173 2673 87 HOH HOH . I 3 HOH A 174 2674 283 HOH HOH . I 3 HOH A 175 2675 274 HOH HOH . I 3 HOH A 176 2676 119 HOH HOH . I 3 HOH A 177 2677 208 HOH HOH . I 3 HOH A 178 2678 156 HOH HOH . I 3 HOH A 179 2679 114 HOH HOH . I 3 HOH A 180 2680 127 HOH HOH . I 3 HOH A 181 2681 91 HOH HOH . I 3 HOH A 182 2682 154 HOH HOH . I 3 HOH A 183 2683 146 HOH HOH . I 3 HOH A 184 2684 42 HOH HOH . I 3 HOH A 185 2685 194 HOH HOH . I 3 HOH A 186 2686 240 HOH HOH . I 3 HOH A 187 2687 227 HOH HOH . I 3 HOH A 188 2688 272 HOH HOH . I 3 HOH A 189 2689 191 HOH HOH . I 3 HOH A 190 2690 71 HOH HOH . I 3 HOH A 191 2691 221 HOH HOH . I 3 HOH A 192 2692 178 HOH HOH . I 3 HOH A 193 2693 271 HOH HOH . I 3 HOH A 194 2694 124 HOH HOH . I 3 HOH A 195 2695 171 HOH HOH . I 3 HOH A 196 2696 117 HOH HOH . I 3 HOH A 197 2697 128 HOH HOH . I 3 HOH A 198 2698 152 HOH HOH . I 3 HOH A 199 2699 236 HOH HOH . I 3 HOH A 200 2700 49 HOH HOH . I 3 HOH A 201 2701 134 HOH HOH . I 3 HOH A 202 2702 182 HOH HOH . I 3 HOH A 203 2703 135 HOH HOH . I 3 HOH A 204 2704 72 HOH HOH . I 3 HOH A 205 2705 220 HOH HOH . I 3 HOH A 206 2706 247 HOH HOH . I 3 HOH A 207 2707 250 HOH HOH . I 3 HOH A 208 2708 210 HOH HOH . I 3 HOH A 209 2709 99 HOH HOH . I 3 HOH A 210 2710 219 HOH HOH . I 3 HOH A 211 2711 245 HOH HOH . I 3 HOH A 212 2712 147 HOH HOH . I 3 HOH A 213 2713 78 HOH HOH . I 3 HOH A 214 2714 249 HOH HOH . I 3 HOH A 215 2715 113 HOH HOH . I 3 HOH A 216 2716 253 HOH HOH . I 3 HOH A 217 2717 259 HOH HOH . I 3 HOH A 218 2718 139 HOH HOH . I 3 HOH A 219 2719 59 HOH HOH . I 3 HOH A 220 2720 218 HOH HOH . I 3 HOH A 221 2721 150 HOH HOH . I 3 HOH A 222 2722 278 HOH HOH . I 3 HOH A 223 2723 232 HOH HOH . I 3 HOH A 224 2724 225 HOH HOH . I 3 HOH A 225 2725 222 HOH HOH . I 3 HOH A 226 2726 185 HOH HOH . I 3 HOH A 227 2727 100 HOH HOH . I 3 HOH A 228 2728 74 HOH HOH . I 3 HOH A 229 2729 101 HOH HOH . I 3 HOH A 230 2730 237 HOH HOH . I 3 HOH A 231 2731 130 HOH HOH . I 3 HOH A 232 2732 269 HOH HOH . I 3 HOH A 233 2733 95 HOH HOH . I 3 HOH A 234 2734 215 HOH HOH . I 3 HOH A 235 2735 248 HOH HOH . I 3 HOH A 236 2736 266 HOH HOH . I 3 HOH A 237 2737 145 HOH HOH . I 3 HOH A 238 2738 226 HOH HOH . I 3 HOH A 239 2739 229 HOH HOH . I 3 HOH A 240 2740 66 HOH HOH . I 3 HOH A 241 2741 197 HOH HOH . I 3 HOH A 242 2742 151 HOH HOH . I 3 HOH A 243 2743 170 HOH HOH . I 3 HOH A 244 2744 193 HOH HOH . I 3 HOH A 245 2745 233 HOH HOH . I 3 HOH A 246 2746 199 HOH HOH . I 3 HOH A 247 2747 235 HOH HOH . I 3 HOH A 248 2748 228 HOH HOH . I 3 HOH A 249 2749 157 HOH HOH . I 3 HOH A 250 2750 166 HOH HOH . I 3 HOH A 251 2751 86 HOH HOH . I 3 HOH A 252 2752 264 HOH HOH . I 3 HOH A 253 2753 188 HOH HOH . I 3 HOH A 254 2754 75 HOH HOH . I 3 HOH A 255 2755 270 HOH HOH . I 3 HOH A 256 2756 125 HOH HOH . I 3 HOH A 257 2757 217 HOH HOH . I 3 HOH A 258 2758 110 HOH HOH . I 3 HOH A 259 2759 285 HOH HOH . I 3 HOH A 260 2760 94 HOH HOH . I 3 HOH A 261 2761 192 HOH HOH . I 3 HOH A 262 2762 204 HOH HOH . I 3 HOH A 263 2763 206 HOH HOH . I 3 HOH A 264 2764 83 HOH HOH . I 3 HOH A 265 2765 263 HOH HOH . I 3 HOH A 266 2766 302 HOH HOH . I 3 HOH A 267 2767 137 HOH HOH . I 3 HOH A 268 2768 183 HOH HOH . I 3 HOH A 269 2769 136 HOH HOH . I 3 HOH A 270 2770 196 HOH HOH . I 3 HOH A 271 2771 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 33.849 -32.557 -36.931 1 44.87 ? C1 EDO 2405 A 1 HETATM 2 O O1 EDO . . . F 2 32.832 -31.626 -36.59 1 46.47 ? O1 EDO 2405 A 1 HETATM 3 C C2 EDO . . . F 2 35.16 -31.935 -36.435 1 46.74 ? C2 EDO 2405 A 1 HETATM 4 O O2 EDO . . . F 2 36.238 -32.773 -36.734 1 47.14 ? O2 EDO 2405 A 1 HETATM 5 H HO1 EDO . . . F 2 32.524 -31.835 -35.668 1 46.58 ? HO1 EDO 2405 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #