data_5EJZ # _model_server_result.job_id zh9H4FnsSPgI-quTtLiQdQ _model_server_result.datetime_utc '2024-11-13 05:37:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ejz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":804}' # _entry.id 5EJZ # _exptl.entry_id 5EJZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EJZ _cell.length_a 67.269 _cell.length_b 216.838 _cell.length_c 221.117 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EJZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 I N N ? 8 M N N ? 8 N N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 BGC BGC C1 O1 . O4 HO4 . sing 2 ? 4 3 2 BGC BGC C1 O1 . O4 HO4 . sing 3 ? 4 4 3 BGC BGC C1 O1 . O4 HO4 . sing 4 ? 4 5 4 BGC BGC C1 O1 . O4 HO4 . sing 5 ? 4 6 5 BGC BGC C1 O1 . O4 HO4 . sing 6 ? 4 7 6 BGC BGC C1 O1 . O4 HO4 . sing 7 ? 4 8 7 BGC BGC C1 O1 . O4 HO4 . sing 8 ? 4 9 8 BGC BGC C1 O1 . O4 HO4 . sing 9 ? 4 10 9 BGC BGC C1 O1 . O4 HO4 . sing 10 ? 4 11 10 BGC BGC C1 O1 . O4 HO4 . sing 11 ? 4 12 11 BGC BGC C1 O1 . O4 HO4 . sing 12 ? 4 13 12 BGC BGC C1 O1 . O4 HO4 . sing 13 ? 4 14 13 BGC BGC C1 O1 . O4 HO4 . sing 14 ? 4 15 14 BGC BGC C1 O1 . O4 HO4 . sing 15 ? 4 16 15 BGC BGC C1 O1 . O4 HO4 . sing 16 ? 4 17 16 BGC BGC C1 O1 . O4 HO4 . sing 17 ? 4 18 17 SHG BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D BGC 1 C 1 BGC A 901 BGC 4 n D BGC 2 C 2 BGC A 902 BGC 4 n D BGC 3 C 3 BGC A 903 BGC 4 n D BGC 4 C 4 BGC A 904 BGC 4 n D BGC 5 C 5 BGC A 905 BGC 4 n D BGC 6 C 6 BGC A 906 BGC 4 n D BGC 7 C 7 BGC A 907 BGC 4 n D BGC 8 C 8 BGC A 908 BGC 4 n D BGC 9 C 9 BGC A 909 BGC 4 n D BGC 10 C 10 BGC A 910 BGC 4 n D BGC 11 C 11 BGC A 911 BGC 4 n D BGC 12 C 12 BGC A 912 BGC 4 n D BGC 13 C 13 BGC A 913 BGC 4 n D BGC 14 C 14 BGC A 914 BGC 4 n D BGC 15 C 15 BGC A 915 BGC 4 n D BGC 16 C 16 BGC A 916 BGC 4 n D BGC 17 C 17 BGC A 917 BGC 4 n D SHG 18 C 18 SHG A 918 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 163 B CYS 163 1_555 B SG CYS 430 B CYS 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 C C UNK 1 D UNK 169 1_555 C N UNK 2 D UNK 170 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 C C UNK 2 D UNK 170 1_555 C N UNK 3 D UNK 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 C C UNK 3 D UNK 171 1_555 C N UNK 4 D UNK 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 C C UNK 4 D UNK 172 1_555 C N UNK 5 D UNK 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C UNK 5 D UNK 173 1_555 C N UNK 6 D UNK 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C UNK 6 D UNK 174 1_555 C N UNK 7 D UNK 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 C C UNK 7 D UNK 175 1_555 C N UNK 8 D UNK 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 C C UNK 8 D UNK 176 1_555 C N UNK 9 D UNK 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 D O4 BGC . C BGC 1 1_555 D C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 D O4 BGC . C BGC 2 1_555 D C1 BGC . C BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 D O4 BGC . C BGC 3 1_555 D C1 BGC . C BGC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale12 D O4 BGC . C BGC 4 1_555 D C1 BGC . C BGC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale13 D O4 BGC . C BGC 5 1_555 D C1 BGC . C BGC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale14 D O4 BGC . C BGC 6 1_555 D C1 BGC . C BGC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 D O4 BGC . C BGC 7 1_555 D C1 BGC . C BGC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale16 D O4 BGC . C BGC 8 1_555 D C1 BGC . C BGC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.474 ? covale ? covale17 D O4 BGC . C BGC 9 1_555 D C1 BGC . C BGC 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale18 D O4 BGC . C BGC 10 1_555 D C1 BGC . C BGC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale19 D O4 BGC . C BGC 11 1_555 D C1 BGC . C BGC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale20 D O4 BGC . C BGC 12 1_555 D C1 BGC . C BGC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale21 D O4 BGC . C BGC 13 1_555 D C1 BGC . C BGC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale22 D O4 BGC . C BGC 14 1_555 D C1 BGC . C BGC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale23 D O4 BGC . C BGC 15 1_555 D C1 BGC . C BGC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.545 ? covale ? covale24 D O4 BGC . C BGC 16 1_555 D C1 BGC . C BGC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale25 D O4 BGC . C BGC 17 1_555 D C1 SHG . C SHG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? metalc ? metalc1 G O1B UDP . A UDP 921 1_555 H MG MG . A MG 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc2 B O GLY 231 B GLY 231 1_555 K MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc3 B O LEU 234 B LEU 234 1_555 K MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc4 B O GLU 237 B GLU 237 1_555 K MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 B O ALA 487 B ALA 487 1_555 K MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.76 ? # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 490 n n C1 O3P PLC sing 491 n n C1 H11 PLC sing 492 n n C1 H12 PLC sing 493 n n C2 C3 PLC sing 494 n n C2 O2 PLC sing 495 n n C2 H2 PLC sing 496 n n C3 O3 PLC sing 497 n n C3 H31 PLC sing 498 n n C3 H32 PLC sing 499 n n C4 C5 PLC sing 500 n n C4 O4P PLC sing 501 n n C4 H41 PLC sing 502 n n C4 H42 PLC sing 503 n n C5 N PLC sing 504 n n C5 H51 PLC sing 505 n n C5 H52 PLC sing 506 n n C6 N PLC sing 507 n n C6 H61 PLC sing 508 n n C6 H62 PLC sing 509 n n C6 H63 PLC sing 510 n n C7 N PLC sing 511 n n C7 H71 PLC sing 512 n n C7 H72 PLC sing 513 n n C7 H73 PLC sing 514 n n C8 N PLC sing 515 n n C8 H81 PLC sing 516 n n C8 H82 PLC sing 517 n n C8 H83 PLC sing 518 n n C' C1' PLC sing 519 n n C' O' PLC doub 520 n n C' O2 PLC sing 521 n n C1' C2' PLC sing 522 n n C1' "H1'1" PLC sing 523 n n C1' "H1'2" PLC sing 524 n n C2' C3' PLC sing 525 n n C2' "H2'1" PLC sing 526 n n C2' "H2'2" PLC sing 527 n n C3' C4' PLC sing 528 n n C3' "H3'1" PLC sing 529 n n C3' "H3'2" PLC sing 530 n n C4' C5' PLC sing 531 n n C4' "H4'1" PLC sing 532 n n C4' "H4'2" PLC sing 533 n n C5' C6' PLC sing 534 n n C5' "H5'1" PLC sing 535 n n C5' "H5'2" PLC sing 536 n n C6' C7' PLC sing 537 n n C6' "H6'1" PLC sing 538 n n C6' "H6'2" PLC sing 539 n n C7' C8' PLC sing 540 n n C7' "H7'1" PLC sing 541 n n C7' "H7'2" PLC sing 542 n n C8' C9' PLC sing 543 n n C8' "H8'1" PLC sing 544 n n C8' "H8'2" PLC sing 545 n n C9' CA' PLC sing 546 n n C9' "H9'1" PLC sing 547 n n C9' "H9'2" PLC sing 548 n n CA' CB' PLC sing 549 n n CA' "HT'1" PLC sing 550 n n CA' "HT'2" PLC sing 551 n n CB' "HE'1" PLC sing 552 n n CB' "HE'2" PLC sing 553 n n CB' "HE'3" PLC sing 554 n n CB C1B PLC sing 555 n n CB OB PLC doub 556 n n CB O3 PLC sing 557 n n C1B C2B PLC sing 558 n n C1B H1A1 PLC sing 559 n n C1B H1A2 PLC sing 560 n n C2B C3B PLC sing 561 n n C2B H2A1 PLC sing 562 n n C2B H2A2 PLC sing 563 n n C3B C4B PLC sing 564 n n C3B H3A1 PLC sing 565 n n C3B H3A2 PLC sing 566 n n C4B C5B PLC sing 567 n n C4B H4A1 PLC sing 568 n n C4B H4A2 PLC sing 569 n n C5B C6B PLC sing 570 n n C5B H5A1 PLC sing 571 n n C5B H5A2 PLC sing 572 n n C6B C7B PLC sing 573 n n C6B H6A1 PLC sing 574 n n C6B H6A2 PLC sing 575 n n C7B C8B PLC sing 576 n n C7B H7A1 PLC sing 577 n n C7B H7A2 PLC sing 578 n n C8B C9B PLC sing 579 n n C8B H8A1 PLC sing 580 n n C8B H8A2 PLC sing 581 n n C9B CAA PLC sing 582 n n C9B H9A1 PLC sing 583 n n C9B H9A2 PLC sing 584 n n CAA CBA PLC sing 585 n n CAA HTA1 PLC sing 586 n n CAA HTA2 PLC sing 587 n n CBA HEA1 PLC sing 588 n n CBA HEA2 PLC sing 589 n n CBA HEA3 PLC sing 590 n n O1P P PLC doub 591 n n O2P P PLC sing 592 n n O2P HOP2 PLC sing 593 n n O3P P PLC sing 594 n n O4P P PLC sing 595 n n # _atom_sites.entry_id 5EJZ _atom_sites.fract_transf_matrix[1][1] 0.014866 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 C2E A 1 919 919 C2E C2E . F 5 C2E A 1 920 920 C2E C2E . G 6 UDP A 1 921 1 UDP UDP . H 7 MG A 1 922 1 MG MG . I 8 PLC A 1 923 1 PLC PLC . J 9 3PE A 1 924 1 3PE 3PE . K 7 MG B 1 801 1 MG MG . L 10 UND B 1 802 1 UND LDA . M 8 PLC B 1 803 1 PLC PLC . N 8 PLC B 1 804 1 PLC PLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' PLC . . . N 8 29.173 -17.199 -55.029 1 75.14 ? C1' PLC 804 B 1 HETATM 2 C C2' PLC . . . N 8 28.6 -15.795 -54.845 1 83.47 ? C2' PLC 804 B 1 HETATM 3 C C3' PLC . . . N 8 28.141 -15.25 -56.195 1 87.91 ? C3' PLC 804 B 1 HETATM 4 C C4' PLC . . . N 8 28.258 -13.728 -56.196 1 89.22 ? C4' PLC 804 B 1 HETATM 5 C C5' PLC . . . N 8 27.257 -13.132 -57.185 1 94.55 ? C5' PLC 804 B 1 HETATM 6 C C6' PLC . . . N 8 27.816 -11.826 -57.746 1 97.13 ? C6' PLC 804 B 1 HETATM 7 C C7' PLC . . . N 8 26.679 -10.975 -58.307 1 92.53 ? C7' PLC 804 B 1 HETATM 8 C C8' PLC . . . N 8 26.763 -9.562 -57.733 1 85.33 ? C8' PLC 804 B 1 HETATM 9 C C9' PLC . . . N 8 25.84 -8.637 -58.524 1 83.65 ? C9' PLC 804 B 1 HETATM 10 C CA' PLC . . . N 8 24.953 -7.85 -57.562 1 77.64 ? CA' PLC 804 B 1 HETATM 11 C CB' PLC . . . N 8 25.139 -6.354 -57.803 1 72.65 ? CB' PLC 804 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 11 #