data_5EK0
#
_model_server_result.job_id            8VNDtZtpm3vO_XskOa34Jw 
_model_server_result.datetime_utc      '2024-12-01 00:46:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ek0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1802}' 
#
_entry.id    5EK0 
#
_exptl.entry_id    5EK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EK0 
_cell.length_a            169.42 
_cell.length_b            188.83 
_cell.length_c            171.13 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 325 n n 
O1 H1P PX4 sing 326 n n 
O2 P1 PX4 doub 327 n n 
P1 O3 PX4 sing 328 n n 
P1 O4 PX4 sing 329 n n 
O3 C1 PX4 sing 330 n n 
C1 C2 PX4 sing 331 n n 
C1 H1 PX4 sing 332 n n 
C1 H2 PX4 sing 333 n n 
C2 N1 PX4 sing 334 n n 
C2 H3 PX4 sing 335 n n 
C2 H4 PX4 sing 336 n n 
N1 C3 PX4 sing 337 n n 
N1 C4 PX4 sing 338 n n 
N1 C5 PX4 sing 339 n n 
C3 H5 PX4 sing 340 n n 
C3 H6 PX4 sing 341 n n 
C3 H7 PX4 sing 342 n n 
C4 H8 PX4 sing 343 n n 
C4 H9 PX4 sing 344 n n 
C4 H10 PX4 sing 345 n n 
C5 H11 PX4 sing 346 n n 
C5 H12 PX4 sing 347 n n 
C5 H13 PX4 sing 348 n n 
O4 C6 PX4 sing 349 n n 
C6 C7 PX4 sing 350 n n 
C6 H14 PX4 sing 351 n n 
C6 H15 PX4 sing 352 n n 
C7 C8 PX4 sing 353 n n 
C7 O7 PX4 sing 354 n n 
C7 H16 PX4 sing 355 n n 
C8 O5 PX4 sing 356 n n 
C8 H17 PX4 sing 357 n n 
C8 H18 PX4 sing 358 n n 
O5 C9 PX4 sing 359 n n 
C9 O6 PX4 doub 360 n n 
C9 C10 PX4 sing 361 n n 
C10 C11 PX4 sing 362 n n 
C10 H19 PX4 sing 363 n n 
C10 H20 PX4 sing 364 n n 
C11 C12 PX4 sing 365 n n 
C11 H21 PX4 sing 366 n n 
C11 H22 PX4 sing 367 n n 
C12 C13 PX4 sing 368 n n 
C12 H23 PX4 sing 369 n n 
C12 H24 PX4 sing 370 n n 
C13 C14 PX4 sing 371 n n 
C13 H25 PX4 sing 372 n n 
C13 H26 PX4 sing 373 n n 
C14 C15 PX4 sing 374 n n 
C14 H27 PX4 sing 375 n n 
C14 H28 PX4 sing 376 n n 
C15 C16 PX4 sing 377 n n 
C15 H29 PX4 sing 378 n n 
C15 H30 PX4 sing 379 n n 
C16 C17 PX4 sing 380 n n 
C16 H31 PX4 sing 381 n n 
C16 H32 PX4 sing 382 n n 
C17 C18 PX4 sing 383 n n 
C17 H33 PX4 sing 384 n n 
C17 H34 PX4 sing 385 n n 
C18 C19 PX4 sing 386 n n 
C18 H35 PX4 sing 387 n n 
C18 H36 PX4 sing 388 n n 
C19 C20 PX4 sing 389 n n 
C19 H37 PX4 sing 390 n n 
C19 H38 PX4 sing 391 n n 
C20 C21 PX4 sing 392 n n 
C20 H39 PX4 sing 393 n n 
C20 H40 PX4 sing 394 n n 
C21 C22 PX4 sing 395 n n 
C21 H41 PX4 sing 396 n n 
C21 H42 PX4 sing 397 n n 
C22 H43 PX4 sing 398 n n 
C22 H44 PX4 sing 399 n n 
C22 H45 PX4 sing 400 n n 
O7 C23 PX4 sing 401 n n 
C23 O8 PX4 doub 402 n n 
C23 C24 PX4 sing 403 n n 
C24 C25 PX4 sing 404 n n 
C24 H46 PX4 sing 405 n n 
C24 H47 PX4 sing 406 n n 
C25 C26 PX4 sing 407 n n 
C25 H48 PX4 sing 408 n n 
C25 H49 PX4 sing 409 n n 
C26 C27 PX4 sing 410 n n 
C26 H50 PX4 sing 411 n n 
C26 H51 PX4 sing 412 n n 
C27 C28 PX4 sing 413 n n 
C27 H52 PX4 sing 414 n n 
C27 H53 PX4 sing 415 n n 
C28 C29 PX4 sing 416 n n 
C28 H54 PX4 sing 417 n n 
C28 H55 PX4 sing 418 n n 
C29 C30 PX4 sing 419 n n 
C29 H56 PX4 sing 420 n n 
C29 H57 PX4 sing 421 n n 
C30 C31 PX4 sing 422 n n 
C30 H58 PX4 sing 423 n n 
C30 H59 PX4 sing 424 n n 
C31 C32 PX4 sing 425 n n 
C31 H60 PX4 sing 426 n n 
C31 H61 PX4 sing 427 n n 
C32 C33 PX4 sing 428 n n 
C32 H62 PX4 sing 429 n n 
C32 H63 PX4 sing 430 n n 
C33 C34 PX4 sing 431 n n 
C33 H64 PX4 sing 432 n n 
C33 H65 PX4 sing 433 n n 
C34 C35 PX4 sing 434 n n 
C34 H66 PX4 sing 435 n n 
C34 H67 PX4 sing 436 n n 
C35 C36 PX4 sing 437 n n 
C35 H68 PX4 sing 438 n n 
C35 H69 PX4 sing 439 n n 
C36 H70 PX4 sing 440 n n 
C36 H71 PX4 sing 441 n n 
C36 H72 PX4 sing 442 n n 
#
_atom_sites.entry_id                     5EK0 
_atom_sites.fract_transf_matrix[1][1]    0.005902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PX4 A 1 1801 2 PX4 PC1 . 
F 2 PX4 A 1 1802 3 PX4 PC1 . 
G 2 PX4 A 1 1803 10 PX4 PC1 . 
H 2 PX4 A 1 1804 11 PX4 PC1 . 
I 2 PX4 A 1 1805 13 PX4 PC1 . 
J 2 PX4 A 1 1806 15 PX4 PC1 . 
K 2 PX4 A 1 1807 19 PX4 PC1 . 
L 3 5P2 A 1 1808 2 5P2 DRG . 
M 2 PX4 B 1 1801 4 PX4 PC1 . 
N 2 PX4 B 1 1802 5 PX4 PC1 . 
O 2 PX4 B 1 1803 12 PX4 PC1 . 
P 2 PX4 B 1 1804 16 PX4 PC1 . 
Q 2 PX4 B 1 1805 20 PX4 PC1 . 
R 3 5P2 B 1 1806 3 5P2 DRG . 
S 2 PX4 C 1 1801 6 PX4 PC1 . 
T 2 PX4 C 1 1802 7 PX4 PC1 . 
U 2 PX4 C 1 1803 9 PX4 PC1 . 
V 2 PX4 C 1 1804 21 PX4 PC1 . 
W 3 5P2 C 1 1805 4 5P2 DRG . 
X 2 PX4 D 1 1801 1 PX4 PC1 . 
Y 2 PX4 D 1 1802 8 PX4 PC1 . 
Z 2 PX4 D 1 1803 14 PX4 PC1 . 
AA 2 PX4 D 1 1804 17 PX4 PC1 . 
BA 2 PX4 D 1 1805 18 PX4 PC1 . 
CA 3 5P2 D 1 1806 1 5P2 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 PX4 . . . T 2 -27.058 -12.142 -11.443 1 142.58 ? O1 PX4 1802 C 1 
HETATM 2 O O2 PX4 . . . T 2 -25.187 -11.738 -9.7 1 192.39 ? O2 PX4 1802 C 1 
HETATM 3 P P1 PX4 . . . T 2 -26.452 -12.464 -10.1 1 169.93 ? P1 PX4 1802 C 1 
HETATM 4 O O3 PX4 . . . T 2 -27.595 -12.232 -8.979 1 170.3 ? O3 PX4 1802 C 1 
HETATM 5 C C1 PX4 . . . T 2 -27.332 -11.619 -7.715 1 173.65 ? C1 PX4 1802 C 1 
HETATM 6 C C2 PX4 . . . T 2 -28.165 -10.343 -7.559 1 176.84 ? C2 PX4 1802 C 1 
HETATM 7 N N1 PX4 . . . T 2 -29.628 -10.499 -7.37 1 171.23 ? N1 PX4 1802 C 1 
HETATM 8 C C3 PX4 . . . T 2 -30.03 -11.681 -6.589 1 167.94 ? C3 PX4 1802 C 1 
HETATM 9 C C4 PX4 . . . T 2 -30.094 -9.294 -6.677 1 165.58 ? C4 PX4 1802 C 1 
HETATM 10 C C5 PX4 . . . T 2 -30.33 -10.537 -8.657 1 166.15 ? C5 PX4 1802 C 1 
HETATM 11 O O4 PX4 . . . T 2 -26.139 -14.053 -10.061 1 162.25 ? O4 PX4 1802 C 1 
HETATM 12 C C6 PX4 . . . T 2 -26.591 -14.954 -9.04 1 153.04 ? C6 PX4 1802 C 1 
HETATM 13 C C7 PX4 . . . T 2 -27.513 -15.981 -9.68 1 150.19 ? C7 PX4 1802 C 1 
HETATM 14 C C8 PX4 . . . T 2 -26.892 -17.377 -9.622 1 147.01 ? C8 PX4 1802 C 1 
HETATM 15 O O5 PX4 . . . T 2 -27.723 -18.247 -10.397 1 149.12 ? O5 PX4 1802 C 1 
HETATM 16 C C9 PX4 . . . T 2 -27.367 -18.708 -11.738 1 141.06 ? C9 PX4 1802 C 1 
HETATM 17 O O6 PX4 . . . T 2 -27.034 -17.894 -12.592 1 139.88 ? O6 PX4 1802 C 1 
HETATM 18 C C10 PX4 . . . T 2 -27.45 -20.184 -12.081 1 124.74 ? C10 PX4 1802 C 1 
HETATM 19 C C11 PX4 . . . T 2 -26.985 -21.063 -10.921 1 121.6 ? C11 PX4 1802 C 1 
HETATM 20 C C12 PX4 . . . T 2 -28.167 -21.721 -10.217 1 118.04 ? C12 PX4 1802 C 1 
HETATM 21 C C13 PX4 . . . T 2 -27.733 -22.467 -8.959 1 117.8 ? C13 PX4 1802 C 1 
HETATM 22 C C14 PX4 . . . T 2 -28.422 -23.824 -8.832 1 118.87 ? C14 PX4 1802 C 1 
HETATM 23 C C15 PX4 . . . T 2 -27.993 -24.544 -7.557 1 118.87 ? C15 PX4 1802 C 1 
HETATM 24 C C16 PX4 . . . T 2 -28.895 -25.728 -7.233 1 116.5 ? C16 PX4 1802 C 1 
HETATM 25 C C17 PX4 . . . T 2 -28.63 -26.266 -5.834 1 116.88 ? C17 PX4 1802 C 1 
HETATM 26 C C18 PX4 . . . T 2 -29.936 -26.453 -5.075 1 126.71 ? C18 PX4 1802 C 1 
HETATM 27 C C19 PX4 . . . T 2 -29.913 -27.733 -4.25 1 132.66 ? C19 PX4 1802 C 1 
HETATM 28 O O7 PX4 . . . T 2 -28.881 -15.928 -9.222 1 147.56 ? O7 PX4 1802 C 1 
HETATM 29 C C23 PX4 . . . T 2 -29.31 -16.517 -7.957 1 134.57 ? C23 PX4 1802 C 1 
HETATM 30 O O8 PX4 . . . T 2 -29.081 -15.901 -6.935 1 126.03 ? O8 PX4 1802 C 1 
HETATM 31 C C24 PX4 . . . T 2 -30.079 -17.827 -7.961 1 123.93 ? C24 PX4 1802 C 1 
HETATM 32 C C25 PX4 . . . T 2 -30.634 -18.241 -6.603 1 122.04 ? C25 PX4 1802 C 1 
HETATM 33 C C26 PX4 . . . T 2 -32.095 -18.657 -6.722 1 128.69 ? C26 PX4 1802 C 1 
HETATM 34 C C27 PX4 . . . T 2 -32.389 -19.896 -5.891 1 143.41 ? C27 PX4 1802 C 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#