data_5EK0
#
_model_server_result.job_id            Oc1SH9y2IL4-w81IUC8lJg 
_model_server_result.datetime_utc      '2024-11-04 22:35:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ek0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1806}' 
#
_entry.id    5EK0 
#
_exptl.entry_id    5EK0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              678.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_entity.pdbx_number_of_molecules    21 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EK0 
_cell.length_a            169.42 
_cell.length_b            188.83 
_cell.length_c            171.13 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EK0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
? 2 AA N N 
? 2 BA N N 
#
_chem_comp.formula           'C36 H73 N O8 P 1' 
_chem_comp.formula_weight    678.94 
_chem_comp.id                PX4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 P1 PX4 sing 325 n n 
O1 H1P PX4 sing 326 n n 
O2 P1 PX4 doub 327 n n 
P1 O3 PX4 sing 328 n n 
P1 O4 PX4 sing 329 n n 
O3 C1 PX4 sing 330 n n 
C1 C2 PX4 sing 331 n n 
C1 H1 PX4 sing 332 n n 
C1 H2 PX4 sing 333 n n 
C2 N1 PX4 sing 334 n n 
C2 H3 PX4 sing 335 n n 
C2 H4 PX4 sing 336 n n 
N1 C3 PX4 sing 337 n n 
N1 C4 PX4 sing 338 n n 
N1 C5 PX4 sing 339 n n 
C3 H5 PX4 sing 340 n n 
C3 H6 PX4 sing 341 n n 
C3 H7 PX4 sing 342 n n 
C4 H8 PX4 sing 343 n n 
C4 H9 PX4 sing 344 n n 
C4 H10 PX4 sing 345 n n 
C5 H11 PX4 sing 346 n n 
C5 H12 PX4 sing 347 n n 
C5 H13 PX4 sing 348 n n 
O4 C6 PX4 sing 349 n n 
C6 C7 PX4 sing 350 n n 
C6 H14 PX4 sing 351 n n 
C6 H15 PX4 sing 352 n n 
C7 C8 PX4 sing 353 n n 
C7 O7 PX4 sing 354 n n 
C7 H16 PX4 sing 355 n n 
C8 O5 PX4 sing 356 n n 
C8 H17 PX4 sing 357 n n 
C8 H18 PX4 sing 358 n n 
O5 C9 PX4 sing 359 n n 
C9 O6 PX4 doub 360 n n 
C9 C10 PX4 sing 361 n n 
C10 C11 PX4 sing 362 n n 
C10 H19 PX4 sing 363 n n 
C10 H20 PX4 sing 364 n n 
C11 C12 PX4 sing 365 n n 
C11 H21 PX4 sing 366 n n 
C11 H22 PX4 sing 367 n n 
C12 C13 PX4 sing 368 n n 
C12 H23 PX4 sing 369 n n 
C12 H24 PX4 sing 370 n n 
C13 C14 PX4 sing 371 n n 
C13 H25 PX4 sing 372 n n 
C13 H26 PX4 sing 373 n n 
C14 C15 PX4 sing 374 n n 
C14 H27 PX4 sing 375 n n 
C14 H28 PX4 sing 376 n n 
C15 C16 PX4 sing 377 n n 
C15 H29 PX4 sing 378 n n 
C15 H30 PX4 sing 379 n n 
C16 C17 PX4 sing 380 n n 
C16 H31 PX4 sing 381 n n 
C16 H32 PX4 sing 382 n n 
C17 C18 PX4 sing 383 n n 
C17 H33 PX4 sing 384 n n 
C17 H34 PX4 sing 385 n n 
C18 C19 PX4 sing 386 n n 
C18 H35 PX4 sing 387 n n 
C18 H36 PX4 sing 388 n n 
C19 C20 PX4 sing 389 n n 
C19 H37 PX4 sing 390 n n 
C19 H38 PX4 sing 391 n n 
C20 C21 PX4 sing 392 n n 
C20 H39 PX4 sing 393 n n 
C20 H40 PX4 sing 394 n n 
C21 C22 PX4 sing 395 n n 
C21 H41 PX4 sing 396 n n 
C21 H42 PX4 sing 397 n n 
C22 H43 PX4 sing 398 n n 
C22 H44 PX4 sing 399 n n 
C22 H45 PX4 sing 400 n n 
O7 C23 PX4 sing 401 n n 
C23 O8 PX4 doub 402 n n 
C23 C24 PX4 sing 403 n n 
C24 C25 PX4 sing 404 n n 
C24 H46 PX4 sing 405 n n 
C24 H47 PX4 sing 406 n n 
C25 C26 PX4 sing 407 n n 
C25 H48 PX4 sing 408 n n 
C25 H49 PX4 sing 409 n n 
C26 C27 PX4 sing 410 n n 
C26 H50 PX4 sing 411 n n 
C26 H51 PX4 sing 412 n n 
C27 C28 PX4 sing 413 n n 
C27 H52 PX4 sing 414 n n 
C27 H53 PX4 sing 415 n n 
C28 C29 PX4 sing 416 n n 
C28 H54 PX4 sing 417 n n 
C28 H55 PX4 sing 418 n n 
C29 C30 PX4 sing 419 n n 
C29 H56 PX4 sing 420 n n 
C29 H57 PX4 sing 421 n n 
C30 C31 PX4 sing 422 n n 
C30 H58 PX4 sing 423 n n 
C30 H59 PX4 sing 424 n n 
C31 C32 PX4 sing 425 n n 
C31 H60 PX4 sing 426 n n 
C31 H61 PX4 sing 427 n n 
C32 C33 PX4 sing 428 n n 
C32 H62 PX4 sing 429 n n 
C32 H63 PX4 sing 430 n n 
C33 C34 PX4 sing 431 n n 
C33 H64 PX4 sing 432 n n 
C33 H65 PX4 sing 433 n n 
C34 C35 PX4 sing 434 n n 
C34 H66 PX4 sing 435 n n 
C34 H67 PX4 sing 436 n n 
C35 C36 PX4 sing 437 n n 
C35 H68 PX4 sing 438 n n 
C35 H69 PX4 sing 439 n n 
C36 H70 PX4 sing 440 n n 
C36 H71 PX4 sing 441 n n 
C36 H72 PX4 sing 442 n n 
#
_atom_sites.entry_id                     5EK0 
_atom_sites.fract_transf_matrix[1][1]    0.005902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005844 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PX4 A 1 1801 2 PX4 PC1 . 
F 2 PX4 A 1 1802 3 PX4 PC1 . 
G 2 PX4 A 1 1803 10 PX4 PC1 . 
H 2 PX4 A 1 1804 11 PX4 PC1 . 
I 2 PX4 A 1 1805 13 PX4 PC1 . 
J 2 PX4 A 1 1806 15 PX4 PC1 . 
K 2 PX4 A 1 1807 19 PX4 PC1 . 
L 3 5P2 A 1 1808 2 5P2 DRG . 
M 2 PX4 B 1 1801 4 PX4 PC1 . 
N 2 PX4 B 1 1802 5 PX4 PC1 . 
O 2 PX4 B 1 1803 12 PX4 PC1 . 
P 2 PX4 B 1 1804 16 PX4 PC1 . 
Q 2 PX4 B 1 1805 20 PX4 PC1 . 
R 3 5P2 B 1 1806 3 5P2 DRG . 
S 2 PX4 C 1 1801 6 PX4 PC1 . 
T 2 PX4 C 1 1802 7 PX4 PC1 . 
U 2 PX4 C 1 1803 9 PX4 PC1 . 
V 2 PX4 C 1 1804 21 PX4 PC1 . 
W 3 5P2 C 1 1805 4 5P2 DRG . 
X 2 PX4 D 1 1801 1 PX4 PC1 . 
Y 2 PX4 D 1 1802 8 PX4 PC1 . 
Z 2 PX4 D 1 1803 14 PX4 PC1 . 
AA 2 PX4 D 1 1804 17 PX4 PC1 . 
BA 2 PX4 D 1 1805 18 PX4 PC1 . 
CA 3 5P2 D 1 1806 1 5P2 DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 PX4 . . . J 2 -50.183 -23.459 6.102 1 148.76 ? C11 PX4 1806 A 1 
HETATM 2 C C12 PX4 . . . J 2 -51.465 -23.59 6.894 1 140.8 ? C12 PX4 1806 A 1 
HETATM 3 C C13 PX4 . . . J 2 -52.683 -23.524 5.982 1 130.43 ? C13 PX4 1806 A 1 
HETATM 4 C C14 PX4 . . . J 2 -53.955 -23.273 6.783 1 138.21 ? C14 PX4 1806 A 1 
HETATM 5 C C15 PX4 . . . J 2 -55.205 -23.552 5.956 1 141.01 ? C15 PX4 1806 A 1 
HETATM 6 C C16 PX4 . . . J 2 -56.471 -23.337 6.777 1 135.13 ? C16 PX4 1806 A 1 
HETATM 7 C C17 PX4 . . . J 2 -57.478 -24.454 6.544 1 117.91 ? C17 PX4 1806 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#