data_5EK2
#
_model_server_result.job_id            Xo329XfOGl_rHYAtvjbcfg 
_model_server_result.datetime_utc      '2024-10-20 03:30:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ek2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5EK2 
#
_exptl.entry_id    5EK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.355 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-cyclohexyl-2-[(5~{S})-6-fluoranyl-5~{H}-imidazo[1,5-b]isoindol-5-yl]ethanone 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EK2 
_cell.length_a            86.005 
_cell.length_b            96.985 
_cell.length_c            131.206 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 308 A CYS 308 1_555 B SG CYS 308 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc1 A NE2 HIS 346 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc2 C FE HEM . A HEM 501 1_555 D NAP 5PJ . A 5PJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc3 B NE2 HIS 346 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc4 E FE HEM . B HEM 501 1_555 F NAP 5PJ . B 5PJ 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
#
_chem_comp.formula           'C18 H19 F N2 O' 
_chem_comp.formula_weight    298.355 
_chem_comp.id                5PJ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-cyclohexyl-2-[(5~{S})-6-fluoranyl-5~{H}-imidazo[1,5-b]isoindol-5-yl]ethanone 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAD CAE 5PJ sing 1 n n 
CAD CAC 5PJ sing 2 n n 
CAE CAF 5PJ sing 3 n n 
CAC CAB 5PJ sing 4 n n 
CAF CAA 5PJ sing 5 n n 
CAB CAA 5PJ sing 6 n n 
CAA CAG 5PJ sing 7 n n 
CAG OAJ 5PJ doub 8 n n 
CAG CAH 5PJ sing 9 n n 
CAH CAI 5PJ sing 10 n n 
CAO NAK 5PJ sing 11 n y 
CAO NAP 5PJ doub 12 n y 
CAI NAK 5PJ sing 13 n n 
CAI CAN 5PJ sing 14 n n 
NAK CAL 5PJ sing 15 n y 
FAV CAU 5PJ sing 16 n n 
NAP CAQ 5PJ sing 17 n y 
CAN CAU 5PJ doub 18 n y 
CAN CAM 5PJ sing 19 n y 
CAU CAT 5PJ sing 20 n y 
CAL CAQ 5PJ doub 21 n y 
CAL CAM 5PJ sing 22 n n 
CAM CAR 5PJ doub 23 n y 
CAT CAS 5PJ doub 24 n y 
CAR CAS 5PJ sing 25 n y 
CAB H1 5PJ sing 26 n n 
CAB H2 5PJ sing 27 n n 
CAC H3 5PJ sing 28 n n 
CAC H4 5PJ sing 29 n n 
CAD H5 5PJ sing 30 n n 
CAD H6 5PJ sing 31 n n 
CAE H7 5PJ sing 32 n n 
CAE H8 5PJ sing 33 n n 
CAF H9 5PJ sing 34 n n 
CAF H10 5PJ sing 35 n n 
CAA H11 5PJ sing 36 n n 
CAH H12 5PJ sing 37 n n 
CAH H13 5PJ sing 38 n n 
CAI H14 5PJ sing 39 n n 
CAT H15 5PJ sing 40 n n 
CAS H16 5PJ sing 41 n n 
CAR H17 5PJ sing 42 n n 
CAO H18 5PJ sing 43 n n 
CAQ H19 5PJ sing 44 n n 
#
_atom_sites.entry_id                     5EK2 
_atom_sites.fract_transf_matrix[1][1]    0.011627 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010311 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007622 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 404 HEM HEM . 
D 3 5PJ A 1 502 501 5PJ 5PJ . 
E 2 HEM B 1 501 404 HEM HEM . 
F 3 5PJ B 1 502 501 5PJ 5PJ . 
G 4 HOH A 1 601 20 HOH HOH . 
G 4 HOH A 2 602 30 HOH HOH . 
G 4 HOH A 3 603 24 HOH HOH . 
G 4 HOH A 4 604 151 HOH HOH . 
G 4 HOH A 5 605 34 HOH HOH . 
G 4 HOH A 6 606 3 HOH HOH . 
G 4 HOH A 7 607 68 HOH HOH . 
G 4 HOH A 8 608 110 HOH HOH . 
G 4 HOH A 9 609 73 HOH HOH . 
G 4 HOH A 10 610 49 HOH HOH . 
G 4 HOH A 11 611 100 HOH HOH . 
G 4 HOH A 12 612 90 HOH HOH . 
G 4 HOH A 13 613 26 HOH HOH . 
G 4 HOH A 14 614 12 HOH HOH . 
G 4 HOH A 15 615 67 HOH HOH . 
G 4 HOH A 16 616 44 HOH HOH . 
G 4 HOH A 17 617 108 HOH HOH . 
G 4 HOH A 18 618 174 HOH HOH . 
G 4 HOH A 19 619 154 HOH HOH . 
G 4 HOH A 20 620 23 HOH HOH . 
G 4 HOH A 21 621 4 HOH HOH . 
G 4 HOH A 22 622 127 HOH HOH . 
G 4 HOH A 23 623 10 HOH HOH . 
G 4 HOH A 24 624 79 HOH HOH . 
G 4 HOH A 25 625 65 HOH HOH . 
G 4 HOH A 26 626 40 HOH HOH . 
G 4 HOH A 27 627 58 HOH HOH . 
G 4 HOH A 28 628 11 HOH HOH . 
G 4 HOH A 29 629 47 HOH HOH . 
G 4 HOH A 30 630 131 HOH HOH . 
G 4 HOH A 31 631 182 HOH HOH . 
G 4 HOH A 32 632 165 HOH HOH . 
G 4 HOH A 33 633 129 HOH HOH . 
G 4 HOH A 34 634 132 HOH HOH . 
G 4 HOH A 35 635 15 HOH HOH . 
G 4 HOH A 36 636 160 HOH HOH . 
G 4 HOH A 37 637 94 HOH HOH . 
H 4 HOH B 1 601 35 HOH HOH . 
H 4 HOH B 2 602 21 HOH HOH . 
H 4 HOH B 3 603 128 HOH HOH . 
H 4 HOH B 4 604 6 HOH HOH . 
H 4 HOH B 5 605 27 HOH HOH . 
H 4 HOH B 6 606 84 HOH HOH . 
H 4 HOH B 7 607 19 HOH HOH . 
H 4 HOH B 8 608 48 HOH HOH . 
H 4 HOH B 9 609 7 HOH HOH . 
H 4 HOH B 10 610 1 HOH HOH . 
H 4 HOH B 11 611 164 HOH HOH . 
H 4 HOH B 12 612 17 HOH HOH . 
H 4 HOH B 13 613 168 HOH HOH . 
H 4 HOH B 14 614 113 HOH HOH . 
H 4 HOH B 15 615 2 HOH HOH . 
H 4 HOH B 16 616 82 HOH HOH . 
H 4 HOH B 17 617 72 HOH HOH . 
H 4 HOH B 18 618 16 HOH HOH . 
H 4 HOH B 19 619 56 HOH HOH . 
H 4 HOH B 20 620 43 HOH HOH . 
H 4 HOH B 21 621 14 HOH HOH . 
H 4 HOH B 22 622 88 HOH HOH . 
H 4 HOH B 23 623 74 HOH HOH . 
H 4 HOH B 24 624 147 HOH HOH . 
H 4 HOH B 25 625 13 HOH HOH . 
H 4 HOH B 26 626 60 HOH HOH . 
H 4 HOH B 27 627 150 HOH HOH . 
H 4 HOH B 28 628 59 HOH HOH . 
H 4 HOH B 29 629 157 HOH HOH . 
H 4 HOH B 30 630 76 HOH HOH . 
H 4 HOH B 31 631 5 HOH HOH . 
H 4 HOH B 32 632 42 HOH HOH . 
H 4 HOH B 33 633 45 HOH HOH . 
H 4 HOH B 34 634 87 HOH HOH . 
H 4 HOH B 35 635 134 HOH HOH . 
H 4 HOH B 36 636 55 HOH HOH . 
H 4 HOH B 37 637 36 HOH HOH . 
H 4 HOH B 38 638 130 HOH HOH . 
H 4 HOH B 39 639 81 HOH HOH . 
H 4 HOH B 40 640 75 HOH HOH . 
H 4 HOH B 41 641 143 HOH HOH . 
H 4 HOH B 42 642 85 HOH HOH . 
H 4 HOH B 43 643 33 HOH HOH . 
H 4 HOH B 44 644 8 HOH HOH . 
H 4 HOH B 45 645 61 HOH HOH . 
H 4 HOH B 46 646 115 HOH HOH . 
H 4 HOH B 47 647 50 HOH HOH . 
H 4 HOH B 48 648 37 HOH HOH . 
H 4 HOH B 49 649 38 HOH HOH . 
H 4 HOH B 50 650 32 HOH HOH . 
H 4 HOH B 51 651 119 HOH HOH . 
H 4 HOH B 52 652 46 HOH HOH . 
H 4 HOH B 53 653 28 HOH HOH . 
H 4 HOH B 54 654 29 HOH HOH . 
H 4 HOH B 55 655 22 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB 5PJ . . . D 3 17.786 -3.343 -25.52 1 49.64 ? CAB 5PJ 502 A 1 
HETATM 2 C CAC 5PJ . . . D 3 17.561 -4.069 -26.83 1 52.68 ? CAC 5PJ 502 A 1 
HETATM 3 C CAD 5PJ . . . D 3 18.017 -5.539 -26.68 1 55.3 ? CAD 5PJ 502 A 1 
HETATM 4 C CAE 5PJ . . . D 3 17.191 -6.212 -25.596 1 55.06 ? CAE 5PJ 502 A 1 
HETATM 5 C CAF 5PJ . . . D 3 17.404 -5.497 -24.271 1 55.71 ? CAF 5PJ 502 A 1 
HETATM 6 C CAA 5PJ . . . D 3 16.947 -4.04 -24.432 1 56.32 ? CAA 5PJ 502 A 1 
HETATM 7 C CAG 5PJ . . . D 3 17.152 -3.324 -23.099 1 53.6 ? CAG 5PJ 502 A 1 
HETATM 8 O OAJ 5PJ . . . D 3 18.2 -2.737 -22.804 1 54.17 ? OAJ 5PJ 502 A 1 
HETATM 9 C CAH 5PJ . . . D 3 15.947 -3.433 -22.163 1 49.64 ? CAH 5PJ 502 A 1 
HETATM 10 C CAI 5PJ . . . D 3 16.218 -2.857 -20.769 1 51.05 ? CAI 5PJ 502 A 1 
HETATM 11 C CAN 5PJ . . . D 3 15.128 -2.983 -19.914 1 52.55 ? CAN 5PJ 502 A 1 
HETATM 12 C CAU 5PJ . . . D 3 13.863 -2.557 -20.048 1 54.75 ? CAU 5PJ 502 A 1 
HETATM 13 F FAV 5PJ . . . D 3 13.495 -1.896 -21.195 1 58.44 ? FAV 5PJ 502 A 1 
HETATM 14 C CAT 5PJ . . . D 3 12.921 -2.784 -19.051 1 50.38 ? CAT 5PJ 502 A 1 
HETATM 15 C CAS 5PJ . . . D 3 13.339 -3.458 -17.912 1 49.64 ? CAS 5PJ 502 A 1 
HETATM 16 C CAR 5PJ . . . D 3 14.663 -3.864 -17.802 1 49.64 ? CAR 5PJ 502 A 1 
HETATM 17 C CAM 5PJ . . . D 3 15.527 -3.605 -18.795 1 52.17 ? CAM 5PJ 502 A 1 
HETATM 18 C CAL 5PJ . . . D 3 16.811 -3.939 -18.903 1 49.64 ? CAL 5PJ 502 A 1 
HETATM 19 N NAK 5PJ . . . D 3 17.31 -3.491 -20.056 1 51.1 ? NAK 5PJ 502 A 1 
HETATM 20 C CAO 5PJ . . . D 3 18.58 -3.882 -20.153 1 50.42 ? CAO 5PJ 502 A 1 
HETATM 21 N NAP 5PJ . . . D 3 18.86 -4.485 -19.019 1 49.64 ? NAP 5PJ 502 A 1 
HETATM 22 C CAQ 5PJ . . . D 3 17.792 -4.532 -18.238 1 49.64 ? CAQ 5PJ 502 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#