data_5EK4
#
_model_server_result.job_id            I92DITqqE21gjFTrinFp0Q 
_model_server_result.datetime_utc      '2024-11-15 09:32:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ek4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    5EK4 
#
_exptl.entry_id    5EK4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              300.371 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R})-1-cyclohexyl-2-[(5~{S})-6-fluoranyl-5~{H}-imidazo[1,5-b]isoindol-5-yl]ethanol 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5EK4 
_cell.length_a            85.768 
_cell.length_b            92.357 
_cell.length_c            129.928 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EK4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 346 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc2 C FE HEM . A HEM 501 1_555 D NAO 5PF . A 5PF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc3 B NE2 HIS 346 B HIS 346 1_555 E FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 E FE HEM . B HEM 501 1_555 F NAO 5PF . B 5PF 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
#
_chem_comp.formula           'C18 H21 F N2 O' 
_chem_comp.formula_weight    300.371 
_chem_comp.id                5PF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R})-1-cyclohexyl-2-[(5~{S})-6-fluoranyl-5~{H}-imidazo[1,5-b]isoindol-5-yl]ethanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAR CAQ 5PF doub 1 n y 
CAR CAS 5PF sing 2 n y 
CAQ CAL 5PF sing 3 n y 
CAS CAT 5PF doub 4 n y 
CAL CAK 5PF sing 5 n n 
CAL CAM 5PF doub 6 n y 
CAP CAK 5PF doub 7 n y 
CAP NAO 5PF sing 8 n y 
CAK NAJ 5PF sing 9 n y 
CAT CAM 5PF sing 10 n y 
CAT FAU 5PF sing 11 n n 
CAM CAI 5PF sing 12 n n 
NAO CAN 5PF doub 13 n y 
NAJ CAI 5PF sing 14 n n 
NAJ CAN 5PF sing 15 n y 
CAI CAH 5PF sing 16 n n 
CAH CAG 5PF sing 17 n n 
CAG OAV 5PF sing 18 n n 
CAG CAC 5PF sing 19 n n 
CAC CAB 5PF sing 20 n n 
CAC CAD 5PF sing 21 n n 
CAB CAA 5PF sing 22 n n 
CAD CAE 5PF sing 23 n n 
CAA CAF 5PF sing 24 n n 
CAE CAF 5PF sing 25 n n 
CAB H1 5PF sing 26 n n 
CAB H2 5PF sing 27 n n 
CAA H3 5PF sing 28 n n 
CAA H4 5PF sing 29 n n 
CAF H5 5PF sing 30 n n 
CAF H6 5PF sing 31 n n 
CAE H7 5PF sing 32 n n 
CAE H8 5PF sing 33 n n 
CAD H9 5PF sing 34 n n 
CAD H10 5PF sing 35 n n 
CAC H11 5PF sing 36 n n 
CAG H12 5PF sing 37 n n 
OAV H13 5PF sing 38 n n 
CAH H14 5PF sing 39 n n 
CAH H15 5PF sing 40 n n 
CAI H16 5PF sing 41 n n 
CAS H17 5PF sing 42 n n 
CAR H18 5PF sing 43 n n 
CAQ H19 5PF sing 44 n n 
CAN H20 5PF sing 45 n n 
CAP H21 5PF sing 46 n n 
#
_atom_sites.entry_id                     5EK4 
_atom_sites.fract_transf_matrix[1][1]    0.011659 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010828 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007697 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 404 HEM HEM . 
D 3 5PF A 1 502 501 5PF 5PF . 
E 2 HEM B 1 501 404 HEM HEM . 
F 3 5PF B 1 502 501 5PF 5PF . 
G 4 HOH A 1 601 77 HOH HOH . 
G 4 HOH A 2 602 84 HOH HOH . 
G 4 HOH A 3 603 62 HOH HOH . 
G 4 HOH A 4 604 39 HOH HOH . 
G 4 HOH A 5 605 23 HOH HOH . 
G 4 HOH A 6 606 40 HOH HOH . 
G 4 HOH A 7 607 63 HOH HOH . 
G 4 HOH A 8 608 15 HOH HOH . 
G 4 HOH A 9 609 4 HOH HOH . 
G 4 HOH A 10 610 12 HOH HOH . 
G 4 HOH A 11 611 90 HOH HOH . 
G 4 HOH A 12 612 96 HOH HOH . 
G 4 HOH A 13 613 37 HOH HOH . 
G 4 HOH A 14 614 53 HOH HOH . 
G 4 HOH A 15 615 51 HOH HOH . 
G 4 HOH A 16 616 19 HOH HOH . 
G 4 HOH A 17 617 8 HOH HOH . 
G 4 HOH A 18 618 94 HOH HOH . 
G 4 HOH A 19 619 64 HOH HOH . 
G 4 HOH A 20 620 9 HOH HOH . 
G 4 HOH A 21 621 49 HOH HOH . 
G 4 HOH A 22 622 79 HOH HOH . 
G 4 HOH A 23 623 28 HOH HOH . 
G 4 HOH A 24 624 27 HOH HOH . 
G 4 HOH A 25 625 50 HOH HOH . 
G 4 HOH A 26 626 47 HOH HOH . 
G 4 HOH A 27 627 36 HOH HOH . 
G 4 HOH A 28 628 16 HOH HOH . 
G 4 HOH A 29 629 55 HOH HOH . 
G 4 HOH A 30 630 95 HOH HOH . 
G 4 HOH A 31 631 93 HOH HOH . 
G 4 HOH A 32 632 85 HOH HOH . 
G 4 HOH A 33 633 56 HOH HOH . 
G 4 HOH A 34 634 92 HOH HOH . 
G 4 HOH A 35 635 97 HOH HOH . 
H 4 HOH B 1 601 59 HOH HOH . 
H 4 HOH B 2 602 70 HOH HOH . 
H 4 HOH B 3 603 72 HOH HOH . 
H 4 HOH B 4 604 71 HOH HOH . 
H 4 HOH B 5 605 5 HOH HOH . 
H 4 HOH B 6 606 43 HOH HOH . 
H 4 HOH B 7 607 46 HOH HOH . 
H 4 HOH B 8 608 48 HOH HOH . 
H 4 HOH B 9 609 35 HOH HOH . 
H 4 HOH B 10 610 86 HOH HOH . 
H 4 HOH B 11 611 88 HOH HOH . 
H 4 HOH B 12 612 13 HOH HOH . 
H 4 HOH B 13 613 33 HOH HOH . 
H 4 HOH B 14 614 61 HOH HOH . 
H 4 HOH B 15 615 3 HOH HOH . 
H 4 HOH B 16 616 2 HOH HOH . 
H 4 HOH B 17 617 83 HOH HOH . 
H 4 HOH B 18 618 11 HOH HOH . 
H 4 HOH B 19 619 1 HOH HOH . 
H 4 HOH B 20 620 34 HOH HOH . 
H 4 HOH B 21 621 22 HOH HOH . 
H 4 HOH B 22 622 52 HOH HOH . 
H 4 HOH B 23 623 6 HOH HOH . 
H 4 HOH B 24 624 26 HOH HOH . 
H 4 HOH B 25 625 29 HOH HOH . 
H 4 HOH B 26 626 38 HOH HOH . 
H 4 HOH B 27 627 24 HOH HOH . 
H 4 HOH B 28 628 32 HOH HOH . 
H 4 HOH B 29 629 7 HOH HOH . 
H 4 HOH B 30 630 44 HOH HOH . 
H 4 HOH B 31 631 21 HOH HOH . 
H 4 HOH B 32 632 65 HOH HOH . 
H 4 HOH B 33 633 66 HOH HOH . 
H 4 HOH B 34 634 60 HOH HOH . 
H 4 HOH B 35 635 68 HOH HOH . 
H 4 HOH B 36 636 87 HOH HOH . 
H 4 HOH B 37 637 78 HOH HOH . 
H 4 HOH B 38 638 57 HOH HOH . 
H 4 HOH B 39 639 17 HOH HOH . 
H 4 HOH B 40 640 82 HOH HOH . 
H 4 HOH B 41 641 42 HOH HOH . 
H 4 HOH B 42 642 20 HOH HOH . 
H 4 HOH B 43 643 30 HOH HOH . 
H 4 HOH B 44 644 10 HOH HOH . 
H 4 HOH B 45 645 31 HOH HOH . 
H 4 HOH B 46 646 74 HOH HOH . 
H 4 HOH B 47 647 58 HOH HOH . 
H 4 HOH B 48 648 14 HOH HOH . 
H 4 HOH B 49 649 80 HOH HOH . 
H 4 HOH B 50 650 81 HOH HOH . 
H 4 HOH B 51 651 67 HOH HOH . 
H 4 HOH B 52 652 76 HOH HOH . 
H 4 HOH B 53 653 73 HOH HOH . 
H 4 HOH B 54 654 69 HOH HOH . 
H 4 HOH B 55 655 25 HOH HOH . 
H 4 HOH B 56 656 18 HOH HOH . 
H 4 HOH B 57 657 41 HOH HOH . 
H 4 HOH B 58 658 91 HOH HOH . 
H 4 HOH B 59 659 89 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAB 5PF . . . D 3 17.082 3.676 25.587 1 45.96 ? CAB 5PF 502 A 1 
HETATM 2 C CAA 5PF . . . D 3 16.727 4.31 26.92 1 45.8 ? CAA 5PF 502 A 1 
HETATM 3 C CAF 5PF . . . D 3 16.744 5.818 26.751 1 46.31 ? CAF 5PF 502 A 1 
HETATM 4 C CAE 5PF . . . D 3 15.743 6.24 25.705 1 47.26 ? CAE 5PF 502 A 1 
HETATM 5 C CAD 5PF . . . D 3 16.094 5.586 24.372 1 46.84 ? CAD 5PF 502 A 1 
HETATM 6 C CAC 5PF . . . D 3 16.063 4.078 24.515 1 45.84 ? CAC 5PF 502 A 1 
HETATM 7 C CAG 5PF . . . D 3 16.42 3.44 23.156 1 44.33 ? CAG 5PF 502 A 1 
HETATM 8 O OAV 5PF . . . D 3 17.672 3.961 22.706 1 47.1 ? OAV 5PF 502 A 1 
HETATM 9 C CAH 5PF . . . D 3 15.311 3.747 22.137 1 41.75 ? CAH 5PF 502 A 1 
HETATM 10 C CAI 5PF . . . D 3 15.572 3.207 20.695 1 41.46 ? CAI 5PF 502 A 1 
HETATM 11 C CAM 5PF . . . D 3 14.46 3.216 19.861 1 42 ? CAM 5PF 502 A 1 
HETATM 12 C CAT 5PF . . . D 3 13.219 2.734 20.036 1 39.27 ? CAT 5PF 502 A 1 
HETATM 13 F FAU 5PF . . . D 3 12.852 2.122 21.227 1 38.81 ? FAU 5PF 502 A 1 
HETATM 14 C CAS 5PF . . . D 3 12.284 2.864 19.026 1 38.02 ? CAS 5PF 502 A 1 
HETATM 15 C CAR 5PF . . . D 3 12.673 3.481 17.845 1 39.18 ? CAR 5PF 502 A 1 
HETATM 16 C CAQ 5PF . . . D 3 13.977 3.937 17.705 1 39.91 ? CAQ 5PF 502 A 1 
HETATM 17 C CAL 5PF . . . D 3 14.851 3.772 18.698 1 42.18 ? CAL 5PF 502 A 1 
HETATM 18 C CAK 5PF . . . D 3 16.132 4.166 18.759 1 43.04 ? CAK 5PF 502 A 1 
HETATM 19 N NAJ 5PF . . . D 3 16.687 3.814 19.928 1 42.38 ? NAJ 5PF 502 A 1 
HETATM 20 C CAN 5PF . . . D 3 17.933 4.288 19.94 1 41.1 ? CAN 5PF 502 A 1 
HETATM 21 N NAO 5PF . . . D 3 18.163 4.811 18.749 1 40.17 ? NAO 5PF 502 A 1 
HETATM 22 C CAP 5PF . . . D 3 17.072 4.747 18.017 1 42.17 ? CAP 5PF 502 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           22 
#