data_5EK5 # _model_server_result.job_id sDnd-VuTnd8eReJqeIF8RQ _model_server_result.datetime_utc '2024-10-10 07:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ek5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 5EK5 # _exptl.entry_id 5EK5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EK5 _cell.length_a 93.999 _cell.length_b 93.999 _cell.length_c 93.999 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EK5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 26 1_555 A SG CYS 83 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? disulf ? disulf2 B SG CYS 24 B CYS 26 1_555 B SG CYS 83 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 E NA NA . B NA 201 1_555 H O HOH . B HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc2 E NA NA . B NA 201 1_555 H O HOH . B HOH 340 10_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5EK5 _atom_sites.fract_transf_matrix[1][1] 0.010638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 201 201 CL CL . D 3 FMT A 1 202 202 FMT FMT . E 4 NA B 1 201 201 NA NA . F 5 EDO B 1 202 202 EDO EDO . G 6 HOH A 1 301 367 HOH HOH . G 6 HOH A 2 302 320 HOH HOH . G 6 HOH A 3 303 319 HOH HOH . G 6 HOH A 4 304 305 HOH HOH . G 6 HOH A 5 305 303 HOH HOH . G 6 HOH A 6 306 314 HOH HOH . G 6 HOH A 7 307 304 HOH HOH . G 6 HOH A 8 308 306 HOH HOH . G 6 HOH A 9 309 302 HOH HOH . G 6 HOH A 10 310 313 HOH HOH . G 6 HOH A 11 311 307 HOH HOH . G 6 HOH A 12 312 317 HOH HOH . G 6 HOH A 13 313 303 HOH HOH . G 6 HOH A 14 314 301 HOH HOH . G 6 HOH A 15 315 329 HOH HOH . G 6 HOH A 16 316 343 HOH HOH . G 6 HOH A 17 317 334 HOH HOH . G 6 HOH A 18 318 324 HOH HOH . G 6 HOH A 19 319 360 HOH HOH . G 6 HOH A 20 320 307 HOH HOH . G 6 HOH A 21 321 312 HOH HOH . G 6 HOH A 22 322 311 HOH HOH . G 6 HOH A 23 323 366 HOH HOH . G 6 HOH A 24 324 310 HOH HOH . G 6 HOH A 25 325 318 HOH HOH . G 6 HOH A 26 326 315 HOH HOH . G 6 HOH A 27 327 352 HOH HOH . G 6 HOH A 28 328 308 HOH HOH . G 6 HOH A 29 329 361 HOH HOH . G 6 HOH A 30 330 349 HOH HOH . G 6 HOH A 31 331 322 HOH HOH . G 6 HOH A 32 332 331 HOH HOH . G 6 HOH A 33 333 341 HOH HOH . G 6 HOH A 34 334 357 HOH HOH . G 6 HOH A 35 335 309 HOH HOH . G 6 HOH A 36 336 344 HOH HOH . G 6 HOH A 37 337 362 HOH HOH . G 6 HOH A 38 338 348 HOH HOH . G 6 HOH A 39 339 338 HOH HOH . G 6 HOH A 40 340 356 HOH HOH . G 6 HOH A 41 341 346 HOH HOH . G 6 HOH A 42 342 327 HOH HOH . G 6 HOH A 43 343 337 HOH HOH . G 6 HOH A 44 344 351 HOH HOH . G 6 HOH A 45 345 332 HOH HOH . G 6 HOH A 46 346 339 HOH HOH . G 6 HOH A 47 347 347 HOH HOH . G 6 HOH A 48 348 316 HOH HOH . G 6 HOH A 49 349 342 HOH HOH . G 6 HOH A 50 350 359 HOH HOH . G 6 HOH A 51 351 345 HOH HOH . G 6 HOH A 52 352 336 HOH HOH . G 6 HOH A 53 353 323 HOH HOH . G 6 HOH A 54 354 368 HOH HOH . G 6 HOH A 55 355 365 HOH HOH . G 6 HOH A 56 356 358 HOH HOH . G 6 HOH A 57 357 326 HOH HOH . G 6 HOH A 58 358 330 HOH HOH . G 6 HOH A 59 359 333 HOH HOH . G 6 HOH A 60 360 345 HOH HOH . G 6 HOH A 61 361 325 HOH HOH . G 6 HOH A 62 362 321 HOH HOH . G 6 HOH A 63 363 371 HOH HOH . G 6 HOH A 64 364 350 HOH HOH . G 6 HOH A 65 365 335 HOH HOH . G 6 HOH A 66 366 354 HOH HOH . G 6 HOH A 67 367 325 HOH HOH . G 6 HOH A 68 368 370 HOH HOH . G 6 HOH A 69 369 340 HOH HOH . G 6 HOH A 70 370 355 HOH HOH . H 6 HOH B 1 301 337 HOH HOH . H 6 HOH B 2 302 313 HOH HOH . H 6 HOH B 3 303 305 HOH HOH . H 6 HOH B 4 304 309 HOH HOH . H 6 HOH B 5 305 308 HOH HOH . H 6 HOH B 6 306 301 HOH HOH . H 6 HOH B 7 307 306 HOH HOH . H 6 HOH B 8 308 339 HOH HOH . H 6 HOH B 9 309 320 HOH HOH . H 6 HOH B 10 310 343 HOH HOH . H 6 HOH B 11 311 302 HOH HOH . H 6 HOH B 12 312 326 HOH HOH . H 6 HOH B 13 313 322 HOH HOH . H 6 HOH B 14 314 324 HOH HOH . H 6 HOH B 15 315 342 HOH HOH . H 6 HOH B 16 316 344 HOH HOH . H 6 HOH B 17 317 338 HOH HOH . H 6 HOH B 18 318 333 HOH HOH . H 6 HOH B 19 319 321 HOH HOH . H 6 HOH B 20 320 318 HOH HOH . H 6 HOH B 21 321 304 HOH HOH . H 6 HOH B 22 322 332 HOH HOH . H 6 HOH B 23 323 327 HOH HOH . H 6 HOH B 24 324 315 HOH HOH . H 6 HOH B 25 325 341 HOH HOH . H 6 HOH B 26 326 310 HOH HOH . H 6 HOH B 27 327 312 HOH HOH . H 6 HOH B 28 328 331 HOH HOH . H 6 HOH B 29 329 328 HOH HOH . H 6 HOH B 30 330 335 HOH HOH . H 6 HOH B 31 331 311 HOH HOH . H 6 HOH B 32 332 314 HOH HOH . H 6 HOH B 33 333 334 HOH HOH . H 6 HOH B 34 334 369 HOH HOH . H 6 HOH B 35 335 340 HOH HOH . H 6 HOH B 36 336 316 HOH HOH . H 6 HOH B 37 337 330 HOH HOH . H 6 HOH B 38 338 328 HOH HOH . H 6 HOH B 39 339 364 HOH HOH . H 6 HOH B 40 340 329 HOH HOH . H 6 HOH B 41 341 317 HOH HOH . H 6 HOH B 42 342 353 HOH HOH . H 6 HOH B 43 343 319 HOH HOH . H 6 HOH B 44 344 336 HOH HOH . H 6 HOH B 45 345 323 HOH HOH . H 6 HOH B 46 346 363 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 3 39.833 -18.395 6.745 1 55.3 ? C FMT 202 A 1 HETATM 2 O O1 FMT . . . D 3 40.143 -17.737 7.737 1 52.83 ? O1 FMT 202 A 1 HETATM 3 O O2 FMT . . . D 3 39.418 -17.906 5.695 1 60.25 ? O2 FMT 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 3 #