data_5EK8
#
_model_server_result.job_id            5UmM8GSnn-S4OJHNnds30w 
_model_server_result.datetime_utc      '2024-11-05 00:36:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ek8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":702}' 
#
_entry.id    5EK8 
#
_exptl.entry_id    5EK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5EK8 
_cell.length_a            121.166 
_cell.length_b            121.166 
_cell.length_c            234.673 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 285 A ASP 285 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc2 A NE2 HIS 359 A HIS 359 1_555 B FE FE2 . A FE2 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc3 A NE2 HIS 364 A HIS 364 1_555 B FE FE2 . A FE2 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc4 A O VAL 414 A VAL 414 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc5 A O GLY 417 A GLY 417 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
metalc ? metalc6 A O LEU 419 A LEU 419 1_555 C NA NA . A NA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc7 A NE2 HIS 570 A HIS 570 1_555 B FE FE2 . A FE2 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc8 A OXT ILE 668 A ILE 668 1_555 B FE FE2 . A FE2 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5EK8 
_atom_sites.fract_transf_matrix[1][1]    0.008253 
_atom_sites.fract_transf_matrix[1][2]    0.004765 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00953 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE2 A 1 701 847 FE2 FE2 . 
C 3 NA A 1 702 1 NA NA . 
D 4 HOH A 1 801 1 HOH HOH . 
D 4 HOH A 2 802 35 HOH HOH . 
D 4 HOH A 3 803 34 HOH HOH . 
D 4 HOH A 4 804 4 HOH HOH . 
D 4 HOH A 5 805 32 HOH HOH . 
D 4 HOH A 6 806 46 HOH HOH . 
D 4 HOH A 7 807 21 HOH HOH . 
D 4 HOH A 8 808 24 HOH HOH . 
D 4 HOH A 9 809 2 HOH HOH . 
D 4 HOH A 10 810 15 HOH HOH . 
D 4 HOH A 11 811 29 HOH HOH . 
D 4 HOH A 12 812 38 HOH HOH . 
D 4 HOH A 13 813 12 HOH HOH . 
D 4 HOH A 14 814 3 HOH HOH . 
D 4 HOH A 15 815 51 HOH HOH . 
D 4 HOH A 16 816 28 HOH HOH . 
D 4 HOH A 17 817 7 HOH HOH . 
D 4 HOH A 18 818 31 HOH HOH . 
D 4 HOH A 19 819 33 HOH HOH . 
D 4 HOH A 20 820 13 HOH HOH . 
D 4 HOH A 21 821 5 HOH HOH . 
D 4 HOH A 22 822 14 HOH HOH . 
D 4 HOH A 23 823 27 HOH HOH . 
D 4 HOH A 24 824 26 HOH HOH . 
D 4 HOH A 25 825 10 HOH HOH . 
D 4 HOH A 26 826 18 HOH HOH . 
D 4 HOH A 27 827 39 HOH HOH . 
D 4 HOH A 28 828 16 HOH HOH . 
D 4 HOH A 29 829 49 HOH HOH . 
D 4 HOH A 30 830 9 HOH HOH . 
D 4 HOH A 31 831 47 HOH HOH . 
D 4 HOH A 32 832 40 HOH HOH . 
D 4 HOH A 33 833 48 HOH HOH . 
D 4 HOH A 34 834 8 HOH HOH . 
D 4 HOH A 35 835 6 HOH HOH . 
D 4 HOH A 36 836 41 HOH HOH . 
D 4 HOH A 37 837 36 HOH HOH . 
D 4 HOH A 38 838 52 HOH HOH . 
D 4 HOH A 39 839 43 HOH HOH . 
D 4 HOH A 40 840 20 HOH HOH . 
D 4 HOH A 41 841 30 HOH HOH . 
D 4 HOH A 42 842 45 HOH HOH . 
D 4 HOH A 43 843 19 HOH HOH . 
D 4 HOH A 44 844 42 HOH HOH . 
D 4 HOH A 45 845 22 HOH HOH . 
D 4 HOH A 46 846 11 HOH HOH . 
D 4 HOH A 47 847 44 HOH HOH . 
D 4 HOH A 48 848 25 HOH HOH . 
D 4 HOH A 49 849 23 HOH HOH . 
D 4 HOH A 50 850 17 HOH HOH . 
D 4 HOH A 51 851 37 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               42.119 
_atom_site.Cartn_y               -8.98 
_atom_site.Cartn_z               20.09 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        38.93 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           702 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              29 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#