data_5EKI # _model_server_result.job_id YY1h8AYCxg1hHLuLWuC3Gg _model_server_result.datetime_utc '2024-11-29 05:25:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":101}' # _entry.id 5EKI # _exptl.entry_id 5EKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.94 _cell.angle_gamma 90 _cell.entry_id 5EKI _cell.length_a 65.752 _cell.length_b 58.244 _cell.length_c 66.054 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 PISA hexameric 6 software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G,L 1 1 B,H,M 2 1 C,I,N 3 1 D,O 4 1 E,J,P 5 1 F,K,Q 6 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 34 A CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 9 A CYS 9 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 34 B CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf4 B SG CYS 9 B CYS 9 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf5 C SG CYS 8 C CYS 8 1_555 C SG CYS 34 C CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 C SG CYS 9 C CYS 9 1_555 C SG CYS 52 C CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? disulf ? disulf7 D SG CYS 8 D CYS 8 1_555 D SG CYS 34 D CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 D SG CYS 9 D CYS 9 1_555 D SG CYS 52 D CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf9 E SG CYS 8 E CYS 8 1_555 E SG CYS 34 E CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? disulf ? disulf10 E SG CYS 9 E CYS 9 1_555 E SG CYS 52 E CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? disulf ? disulf11 F SG CYS 8 F CYS 8 1_555 F SG CYS 34 F CYS 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf12 F SG CYS 9 F CYS 9 1_555 F SG CYS 52 F CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 274 n n S O2 SO4 doub 275 n n S O3 SO4 sing 276 n n S O4 SO4 sing 277 n n # _atom_sites.entry_id 5EKI _atom_sites.fract_transf_matrix[1][1] 0.015209 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00876 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017471 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 SO4 A 1 101 101 SO4 SO4 . H 2 SO4 B 1 101 101 SO4 SO4 . I 2 SO4 C 1 101 101 SO4 SO4 . J 2 SO4 E 1 101 101 SO4 SO4 . K 2 SO4 F 1 101 101 SO4 SO4 . L 3 HOH A 1 201 202 HOH HOH . L 3 HOH A 2 202 206 HOH HOH . L 3 HOH A 3 203 201 HOH HOH . L 3 HOH A 4 204 230 HOH HOH . L 3 HOH A 5 205 205 HOH HOH . L 3 HOH A 6 206 213 HOH HOH . L 3 HOH A 7 207 207 HOH HOH . L 3 HOH A 8 208 218 HOH HOH . L 3 HOH A 9 209 219 HOH HOH . L 3 HOH A 10 210 216 HOH HOH . L 3 HOH A 11 211 223 HOH HOH . L 3 HOH A 12 212 220 HOH HOH . L 3 HOH A 13 213 214 HOH HOH . L 3 HOH A 14 214 203 HOH HOH . L 3 HOH A 15 215 215 HOH HOH . L 3 HOH A 16 216 210 HOH HOH . L 3 HOH A 17 217 211 HOH HOH . L 3 HOH A 18 218 222 HOH HOH . L 3 HOH A 19 219 212 HOH HOH . L 3 HOH A 20 220 228 HOH HOH . L 3 HOH A 21 221 217 HOH HOH . L 3 HOH A 22 222 209 HOH HOH . L 3 HOH A 23 223 208 HOH HOH . L 3 HOH A 24 224 221 HOH HOH . L 3 HOH A 25 225 229 HOH HOH . L 3 HOH A 26 226 227 HOH HOH . L 3 HOH A 27 227 204 HOH HOH . L 3 HOH A 28 228 227 HOH HOH . L 3 HOH A 29 229 236 HOH HOH . L 3 HOH A 30 230 226 HOH HOH . L 3 HOH A 31 231 224 HOH HOH . L 3 HOH A 32 232 225 HOH HOH . L 3 HOH A 33 233 231 HOH HOH . L 3 HOH A 34 234 234 HOH HOH . L 3 HOH A 35 235 232 HOH HOH . L 3 HOH A 36 236 235 HOH HOH . L 3 HOH A 37 237 233 HOH HOH . L 3 HOH A 38 238 237 HOH HOH . L 3 HOH A 39 239 238 HOH HOH . L 3 HOH A 40 240 239 HOH HOH . L 3 HOH A 41 241 233 HOH HOH . M 3 HOH B 1 201 205 HOH HOH . M 3 HOH B 2 202 201 HOH HOH . M 3 HOH B 3 203 202 HOH HOH . M 3 HOH B 4 204 206 HOH HOH . M 3 HOH B 5 205 204 HOH HOH . M 3 HOH B 6 206 210 HOH HOH . M 3 HOH B 7 207 208 HOH HOH . M 3 HOH B 8 208 212 HOH HOH . M 3 HOH B 9 209 215 HOH HOH . M 3 HOH B 10 210 213 HOH HOH . M 3 HOH B 11 211 214 HOH HOH . M 3 HOH B 12 212 217 HOH HOH . M 3 HOH B 13 213 209 HOH HOH . M 3 HOH B 14 214 218 HOH HOH . M 3 HOH B 15 215 221 HOH HOH . M 3 HOH B 16 216 226 HOH HOH . M 3 HOH B 17 217 216 HOH HOH . M 3 HOH B 18 218 220 HOH HOH . M 3 HOH B 19 219 223 HOH HOH . M 3 HOH B 20 220 211 HOH HOH . M 3 HOH B 21 221 222 HOH HOH . M 3 HOH B 22 222 230 HOH HOH . M 3 HOH B 23 223 225 HOH HOH . M 3 HOH B 24 224 203 HOH HOH . M 3 HOH B 25 225 219 HOH HOH . M 3 HOH B 26 226 227 HOH HOH . M 3 HOH B 27 227 229 HOH HOH . M 3 HOH B 28 228 231 HOH HOH . M 3 HOH B 29 229 232 HOH HOH . M 3 HOH B 30 230 228 HOH HOH . M 3 HOH B 31 231 234 HOH HOH . N 3 HOH C 1 201 203 HOH HOH . N 3 HOH C 2 202 206 HOH HOH . N 3 HOH C 3 203 207 HOH HOH . N 3 HOH C 4 204 209 HOH HOH . N 3 HOH C 5 205 204 HOH HOH . N 3 HOH C 6 206 213 HOH HOH . N 3 HOH C 7 207 211 HOH HOH . N 3 HOH C 8 208 226 HOH HOH . N 3 HOH C 9 209 210 HOH HOH . N 3 HOH C 10 210 212 HOH HOH . N 3 HOH C 11 211 205 HOH HOH . N 3 HOH C 12 212 202 HOH HOH . N 3 HOH C 13 213 214 HOH HOH . N 3 HOH C 14 214 201 HOH HOH . N 3 HOH C 15 215 218 HOH HOH . N 3 HOH C 16 216 215 HOH HOH . N 3 HOH C 17 217 216 HOH HOH . N 3 HOH C 18 218 217 HOH HOH . N 3 HOH C 19 219 221 HOH HOH . N 3 HOH C 20 220 208 HOH HOH . N 3 HOH C 21 221 219 HOH HOH . N 3 HOH C 22 222 225 HOH HOH . N 3 HOH C 23 223 220 HOH HOH . N 3 HOH C 24 224 222 HOH HOH . N 3 HOH C 25 225 224 HOH HOH . N 3 HOH C 26 226 223 HOH HOH . N 3 HOH C 27 227 224 HOH HOH . O 3 HOH D 1 101 101 HOH HOH . O 3 HOH D 2 102 108 HOH HOH . O 3 HOH D 3 103 102 HOH HOH . O 3 HOH D 4 104 105 HOH HOH . O 3 HOH D 5 105 104 HOH HOH . O 3 HOH D 6 106 107 HOH HOH . O 3 HOH D 7 107 113 HOH HOH . O 3 HOH D 8 108 109 HOH HOH . O 3 HOH D 9 109 106 HOH HOH . O 3 HOH D 10 110 114 HOH HOH . O 3 HOH D 11 111 103 HOH HOH . O 3 HOH D 12 112 112 HOH HOH . O 3 HOH D 13 113 115 HOH HOH . O 3 HOH D 14 114 111 HOH HOH . O 3 HOH D 15 115 212 HOH HOH . O 3 HOH D 16 116 122 HOH HOH . O 3 HOH D 17 117 110 HOH HOH . O 3 HOH D 18 118 116 HOH HOH . O 3 HOH D 19 119 118 HOH HOH . O 3 HOH D 20 120 117 HOH HOH . O 3 HOH D 21 121 119 HOH HOH . O 3 HOH D 22 122 120 HOH HOH . O 3 HOH D 23 123 126 HOH HOH . O 3 HOH D 24 124 121 HOH HOH . O 3 HOH D 25 125 123 HOH HOH . O 3 HOH D 26 126 125 HOH HOH . O 3 HOH D 27 127 124 HOH HOH . O 3 HOH D 28 128 127 HOH HOH . O 3 HOH D 29 129 128 HOH HOH . P 3 HOH E 1 201 203 HOH HOH . P 3 HOH E 2 202 202 HOH HOH . P 3 HOH E 3 203 201 HOH HOH . P 3 HOH E 4 204 207 HOH HOH . P 3 HOH E 5 205 207 HOH HOH . P 3 HOH E 6 206 208 HOH HOH . P 3 HOH E 7 207 206 HOH HOH . P 3 HOH E 8 208 205 HOH HOH . P 3 HOH E 9 209 204 HOH HOH . P 3 HOH E 10 210 212 HOH HOH . P 3 HOH E 11 211 213 HOH HOH . P 3 HOH E 12 212 214 HOH HOH . P 3 HOH E 13 213 210 HOH HOH . P 3 HOH E 14 214 218 HOH HOH . P 3 HOH E 15 215 221 HOH HOH . P 3 HOH E 16 216 209 HOH HOH . P 3 HOH E 17 217 211 HOH HOH . P 3 HOH E 18 218 216 HOH HOH . P 3 HOH E 19 219 224 HOH HOH . P 3 HOH E 20 220 215 HOH HOH . P 3 HOH E 21 221 219 HOH HOH . P 3 HOH E 22 222 217 HOH HOH . P 3 HOH E 23 223 220 HOH HOH . P 3 HOH E 24 224 226 HOH HOH . P 3 HOH E 25 225 230 HOH HOH . P 3 HOH E 26 226 225 HOH HOH . P 3 HOH E 27 227 223 HOH HOH . P 3 HOH E 28 228 229 HOH HOH . P 3 HOH E 29 229 231 HOH HOH . P 3 HOH E 30 230 228 HOH HOH . P 3 HOH E 31 231 233 HOH HOH . P 3 HOH E 32 232 232 HOH HOH . Q 3 HOH F 1 201 201 HOH HOH . Q 3 HOH F 2 202 202 HOH HOH . Q 3 HOH F 3 203 203 HOH HOH . Q 3 HOH F 4 204 206 HOH HOH . Q 3 HOH F 5 205 205 HOH HOH . Q 3 HOH F 6 206 207 HOH HOH . Q 3 HOH F 7 207 204 HOH HOH . Q 3 HOH F 8 208 208 HOH HOH . Q 3 HOH F 9 209 209 HOH HOH . Q 3 HOH F 10 210 213 HOH HOH . Q 3 HOH F 11 211 210 HOH HOH . Q 3 HOH F 12 212 211 HOH HOH . Q 3 HOH F 13 213 214 HOH HOH . Q 3 HOH F 14 214 216 HOH HOH . Q 3 HOH F 15 215 219 HOH HOH . Q 3 HOH F 16 216 220 HOH HOH . Q 3 HOH F 17 217 218 HOH HOH . Q 3 HOH F 18 218 215 HOH HOH . Q 3 HOH F 19 219 223 HOH HOH . Q 3 HOH F 20 220 217 HOH HOH . Q 3 HOH F 21 221 224 HOH HOH . Q 3 HOH F 22 222 222 HOH HOH . Q 3 HOH F 23 223 221 HOH HOH . Q 3 HOH F 24 224 225 HOH HOH . Q 3 HOH F 25 225 226 HOH HOH . Q 3 HOH F 26 226 227 HOH HOH . Q 3 HOH F 27 227 228 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 2 -12.982 0.262 1.747 1 39.47 ? S SO4 101 E 1 HETATM 2 O O1 SO4 . . . J 2 -12.492 1.142 0.651 1 44.01 ? O1 SO4 101 E 1 HETATM 3 O O2 SO4 . . . J 2 -13.45 -1.025 1.174 1 40.6 ? O2 SO4 101 E 1 HETATM 4 O O3 SO4 . . . J 2 -14.09 0.906 2.433 1 41.63 ? O3 SO4 101 E 1 HETATM 5 O O4 SO4 . . . J 2 -11.894 0.048 2.738 1 39.74 ? O4 SO4 101 E 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #