data_5EKO # _model_server_result.job_id 0CeAIM34ixOj4gFub7PJpA _model_server_result.datetime_utc '2025-07-31 09:27:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5eko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5EKO # _exptl.entry_id 5EKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 370.404 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(4-methyl-1H-imidazol-1-yl)-N-[4-(pyridin-4-yloxy)phenyl]benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EKO _cell.length_a 61.263 _cell.length_b 69.669 _cell.length_c 93.068 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H18 N4 O2' _chem_comp.formula_weight 370.404 _chem_comp.id N17 _chem_comp.mon_nstd_flag . _chem_comp.name 3-(4-methyl-1H-imidazol-1-yl)-N-[4-(pyridin-4-yloxy)phenyl]benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 N3 N17 doub 237 n y C16 C15 N17 sing 238 n y N3 C17 N17 sing 239 n y C17 C18 N17 doub 240 n y C15 C14 N17 doub 241 n y C18 C14 N17 sing 242 n y C14 O2 N17 sing 243 n n O2 C13 N17 sing 244 n n C13 C12 N17 doub 245 n y C13 C19 N17 sing 246 n y C12 C11 N17 sing 247 n y C19 C20 N17 doub 248 n y C11 C10 N17 doub 249 n y C20 C10 N17 sing 250 n y C10 N2 N17 sing 251 n n N2 C9 N17 sing 252 n n O1 C9 N17 doub 253 n n C9 C8 N17 sing 254 n n C8 C7 N17 doub 255 n y C8 C21 N17 sing 256 n y C7 C6 N17 sing 257 n y C21 C4 N17 doub 258 n y C6 C5 N17 doub 259 n y C4 C5 N17 sing 260 n y C4 N1 N17 sing 261 n n C3 N1 N17 sing 262 n y C3 C2 N17 doub 263 n y N1 C22 N17 sing 264 n y C1 C2 N17 sing 265 n n C2 N4 N17 sing 266 n y C22 N4 N17 doub 267 n y C7 H1 N17 sing 268 n n C6 H2 N17 sing 269 n n C5 H3 N17 sing 270 n n C21 H4 N17 sing 271 n n C3 H5 N17 sing 272 n n C22 H6 N17 sing 273 n n C1 H7 N17 sing 274 n n C1 H8 N17 sing 275 n n C1 H9 N17 sing 276 n n N2 H10 N17 sing 277 n n C20 H11 N17 sing 278 n n C19 H12 N17 sing 279 n n C12 H13 N17 sing 280 n n C11 H14 N17 sing 281 n n C18 H15 N17 sing 282 n n C17 H16 N17 sing 283 n n C16 H17 N17 sing 284 n n C15 H18 N17 sing 285 n n # _atom_sites.entry_id 5EKO _atom_sites.fract_transf_matrix[1][1] 0.016323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014354 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 N17 A 1 401 401 N17 N17 . C 3 HOH A 1 501 187 HOH HOH . C 3 HOH A 2 502 188 HOH HOH . C 3 HOH A 3 503 138 HOH HOH . C 3 HOH A 4 504 191 HOH HOH . C 3 HOH A 5 505 193 HOH HOH . C 3 HOH A 6 506 190 HOH HOH . C 3 HOH A 7 507 165 HOH HOH . C 3 HOH A 8 508 72 HOH HOH . C 3 HOH A 9 509 55 HOH HOH . C 3 HOH A 10 510 123 HOH HOH . C 3 HOH A 11 511 43 HOH HOH . C 3 HOH A 12 512 205 HOH HOH . C 3 HOH A 13 513 155 HOH HOH . C 3 HOH A 14 514 6 HOH HOH . C 3 HOH A 15 515 38 HOH HOH . C 3 HOH A 16 516 140 HOH HOH . C 3 HOH A 17 517 81 HOH HOH . C 3 HOH A 18 518 63 HOH HOH . C 3 HOH A 19 519 189 HOH HOH . C 3 HOH A 20 520 120 HOH HOH . C 3 HOH A 21 521 36 HOH HOH . C 3 HOH A 22 522 207 HOH HOH . C 3 HOH A 23 523 10 HOH HOH . C 3 HOH A 24 524 175 HOH HOH . C 3 HOH A 25 525 162 HOH HOH . C 3 HOH A 26 526 121 HOH HOH . C 3 HOH A 27 527 66 HOH HOH . C 3 HOH A 28 528 58 HOH HOH . C 3 HOH A 29 529 76 HOH HOH . C 3 HOH A 30 530 183 HOH HOH . C 3 HOH A 31 531 144 HOH HOH . C 3 HOH A 32 532 145 HOH HOH . C 3 HOH A 33 533 158 HOH HOH . C 3 HOH A 34 534 110 HOH HOH . C 3 HOH A 35 535 37 HOH HOH . C 3 HOH A 36 536 28 HOH HOH . C 3 HOH A 37 537 126 HOH HOH . C 3 HOH A 38 538 22 HOH HOH . C 3 HOH A 39 539 5 HOH HOH . C 3 HOH A 40 540 170 HOH HOH . C 3 HOH A 41 541 45 HOH HOH . C 3 HOH A 42 542 62 HOH HOH . C 3 HOH A 43 543 85 HOH HOH . C 3 HOH A 44 544 14 HOH HOH . C 3 HOH A 45 545 1 HOH HOH . C 3 HOH A 46 546 52 HOH HOH . C 3 HOH A 47 547 168 HOH HOH . C 3 HOH A 48 548 142 HOH HOH . C 3 HOH A 49 549 33 HOH HOH . C 3 HOH A 50 550 21 HOH HOH . C 3 HOH A 51 551 113 HOH HOH . C 3 HOH A 52 552 17 HOH HOH . C 3 HOH A 53 553 115 HOH HOH . C 3 HOH A 54 554 48 HOH HOH . C 3 HOH A 55 555 57 HOH HOH . C 3 HOH A 56 556 86 HOH HOH . C 3 HOH A 57 557 213 HOH HOH . C 3 HOH A 58 558 94 HOH HOH . C 3 HOH A 59 559 164 HOH HOH . C 3 HOH A 60 560 79 HOH HOH . C 3 HOH A 61 561 172 HOH HOH . C 3 HOH A 62 562 78 HOH HOH . C 3 HOH A 63 563 54 HOH HOH . C 3 HOH A 64 564 77 HOH HOH . C 3 HOH A 65 565 46 HOH HOH . C 3 HOH A 66 566 90 HOH HOH . C 3 HOH A 67 567 84 HOH HOH . C 3 HOH A 68 568 4 HOH HOH . C 3 HOH A 69 569 134 HOH HOH . C 3 HOH A 70 570 12 HOH HOH . C 3 HOH A 71 571 80 HOH HOH . C 3 HOH A 72 572 73 HOH HOH . C 3 HOH A 73 573 11 HOH HOH . C 3 HOH A 74 574 29 HOH HOH . C 3 HOH A 75 575 143 HOH HOH . C 3 HOH A 76 576 96 HOH HOH . C 3 HOH A 77 577 107 HOH HOH . C 3 HOH A 78 578 23 HOH HOH . C 3 HOH A 79 579 67 HOH HOH . C 3 HOH A 80 580 20 HOH HOH . C 3 HOH A 81 581 127 HOH HOH . C 3 HOH A 82 582 59 HOH HOH . C 3 HOH A 83 583 34 HOH HOH . C 3 HOH A 84 584 9 HOH HOH . C 3 HOH A 85 585 50 HOH HOH . C 3 HOH A 86 586 25 HOH HOH . C 3 HOH A 87 587 19 HOH HOH . C 3 HOH A 88 588 108 HOH HOH . C 3 HOH A 89 589 2 HOH HOH . C 3 HOH A 90 590 24 HOH HOH . C 3 HOH A 91 591 137 HOH HOH . C 3 HOH A 92 592 93 HOH HOH . C 3 HOH A 93 593 111 HOH HOH . C 3 HOH A 94 594 32 HOH HOH . C 3 HOH A 95 595 13 HOH HOH . C 3 HOH A 96 596 194 HOH HOH . C 3 HOH A 97 597 74 HOH HOH . C 3 HOH A 98 598 44 HOH HOH . C 3 HOH A 99 599 18 HOH HOH . C 3 HOH A 100 600 7 HOH HOH . C 3 HOH A 101 601 15 HOH HOH . C 3 HOH A 102 602 64 HOH HOH . C 3 HOH A 103 603 124 HOH HOH . C 3 HOH A 104 604 3 HOH HOH . C 3 HOH A 105 605 95 HOH HOH . C 3 HOH A 106 606 179 HOH HOH . C 3 HOH A 107 607 128 HOH HOH . C 3 HOH A 108 608 133 HOH HOH . C 3 HOH A 109 609 91 HOH HOH . C 3 HOH A 110 610 104 HOH HOH . C 3 HOH A 111 611 159 HOH HOH . C 3 HOH A 112 612 130 HOH HOH . C 3 HOH A 113 613 26 HOH HOH . C 3 HOH A 114 614 146 HOH HOH . C 3 HOH A 115 615 152 HOH HOH . C 3 HOH A 116 616 163 HOH HOH . C 3 HOH A 117 617 102 HOH HOH . C 3 HOH A 118 618 68 HOH HOH . C 3 HOH A 119 619 61 HOH HOH . C 3 HOH A 120 620 8 HOH HOH . C 3 HOH A 121 621 114 HOH HOH . C 3 HOH A 122 622 40 HOH HOH . C 3 HOH A 123 623 31 HOH HOH . C 3 HOH A 124 624 148 HOH HOH . C 3 HOH A 125 625 41 HOH HOH . C 3 HOH A 126 626 141 HOH HOH . C 3 HOH A 127 627 35 HOH HOH . C 3 HOH A 128 628 53 HOH HOH . C 3 HOH A 129 629 105 HOH HOH . C 3 HOH A 130 630 92 HOH HOH . C 3 HOH A 131 631 16 HOH HOH . C 3 HOH A 132 632 196 HOH HOH . C 3 HOH A 133 633 51 HOH HOH . C 3 HOH A 134 634 65 HOH HOH . C 3 HOH A 135 635 125 HOH HOH . C 3 HOH A 136 636 109 HOH HOH . C 3 HOH A 137 637 70 HOH HOH . C 3 HOH A 138 638 118 HOH HOH . C 3 HOH A 139 639 206 HOH HOH . C 3 HOH A 140 640 99 HOH HOH . C 3 HOH A 141 641 201 HOH HOH . C 3 HOH A 142 642 211 HOH HOH . C 3 HOH A 143 643 147 HOH HOH . C 3 HOH A 144 644 101 HOH HOH . C 3 HOH A 145 645 186 HOH HOH . C 3 HOH A 146 646 167 HOH HOH . C 3 HOH A 147 647 49 HOH HOH . C 3 HOH A 148 648 75 HOH HOH . C 3 HOH A 149 649 185 HOH HOH . C 3 HOH A 150 650 39 HOH HOH . C 3 HOH A 151 651 71 HOH HOH . C 3 HOH A 152 652 212 HOH HOH . C 3 HOH A 153 653 181 HOH HOH . C 3 HOH A 154 654 178 HOH HOH . C 3 HOH A 155 655 60 HOH HOH . C 3 HOH A 156 656 136 HOH HOH . C 3 HOH A 157 657 173 HOH HOH . C 3 HOH A 158 658 83 HOH HOH . C 3 HOH A 159 659 103 HOH HOH . C 3 HOH A 160 660 176 HOH HOH . C 3 HOH A 161 661 174 HOH HOH . C 3 HOH A 162 662 192 HOH HOH . C 3 HOH A 163 663 30 HOH HOH . C 3 HOH A 164 664 89 HOH HOH . C 3 HOH A 165 665 202 HOH HOH . C 3 HOH A 166 666 82 HOH HOH . C 3 HOH A 167 667 150 HOH HOH . C 3 HOH A 168 668 204 HOH HOH . C 3 HOH A 169 669 106 HOH HOH . C 3 HOH A 170 670 119 HOH HOH . C 3 HOH A 171 671 131 HOH HOH . C 3 HOH A 172 672 135 HOH HOH . C 3 HOH A 173 673 166 HOH HOH . C 3 HOH A 174 674 87 HOH HOH . C 3 HOH A 175 675 69 HOH HOH . C 3 HOH A 176 676 171 HOH HOH . C 3 HOH A 177 677 149 HOH HOH . C 3 HOH A 178 678 129 HOH HOH . C 3 HOH A 179 679 177 HOH HOH . C 3 HOH A 180 680 97 HOH HOH . C 3 HOH A 181 681 100 HOH HOH . C 3 HOH A 182 682 198 HOH HOH . C 3 HOH A 183 683 169 HOH HOH . C 3 HOH A 184 684 27 HOH HOH . C 3 HOH A 185 685 180 HOH HOH . C 3 HOH A 186 686 197 HOH HOH . C 3 HOH A 187 687 195 HOH HOH . C 3 HOH A 188 688 200 HOH HOH . C 3 HOH A 189 689 199 HOH HOH . C 3 HOH A 190 690 184 HOH HOH . C 3 HOH A 191 691 42 HOH HOH . C 3 HOH A 192 692 182 HOH HOH . C 3 HOH A 193 693 47 HOH HOH . C 3 HOH A 194 694 122 HOH HOH . C 3 HOH A 195 695 156 HOH HOH . C 3 HOH A 196 696 132 HOH HOH . C 3 HOH A 197 697 210 HOH HOH . C 3 HOH A 198 698 153 HOH HOH . C 3 HOH A 199 699 209 HOH HOH . C 3 HOH A 200 700 160 HOH HOH . C 3 HOH A 201 701 157 HOH HOH . C 3 HOH A 202 702 203 HOH HOH . C 3 HOH A 203 703 139 HOH HOH . C 3 HOH A 204 704 88 HOH HOH . C 3 HOH A 205 705 112 HOH HOH . C 3 HOH A 206 706 56 HOH HOH . C 3 HOH A 207 707 161 HOH HOH . C 3 HOH A 208 708 151 HOH HOH . C 3 HOH A 209 709 208 HOH HOH . C 3 HOH A 210 710 154 HOH HOH . C 3 HOH A 211 711 98 HOH HOH . C 3 HOH A 212 712 116 HOH HOH . C 3 HOH A 213 713 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 N17 . . . B 2 -13.176 12.439 -26.447 1 26.12 ? O1 N17 401 A 1 HETATM 2 C C9 N17 . . . B 2 -13.989 11.551 -26.26 1 29.92 ? C9 N17 401 A 1 HETATM 3 C C8 N17 . . . B 2 -14.797 11.615 -24.993 1 28.41 ? C8 N17 401 A 1 HETATM 4 C C7 N17 . . . B 2 -15.165 12.849 -24.482 1 28.56 ? C7 N17 401 A 1 HETATM 5 C C6 N17 . . . B 2 -15.912 12.91 -23.316 1 26.81 ? C6 N17 401 A 1 HETATM 6 C C5 N17 . . . B 2 -16.284 11.741 -22.668 1 28.8 ? C5 N17 401 A 1 HETATM 7 C C21 N17 . . . B 2 -15.191 10.458 -24.33 1 33 ? C21 N17 401 A 1 HETATM 8 C C4 N17 . . . B 2 -15.94 10.477 -23.145 1 29.42 ? C4 N17 401 A 1 HETATM 9 N N1 N17 . . . B 2 -16.301 9.349 -22.526 1 33.19 ? N1 N17 401 A 1 HETATM 10 C C3 N17 . . . B 2 -15.947 8.166 -23.015 1 33.71 ? C3 N17 401 A 1 HETATM 11 C C22 N17 . . . B 2 -17.027 9.323 -21.402 1 32.39 ? C22 N17 401 A 1 HETATM 12 N N4 N17 . . . B 2 -17.159 8.002 -21.108 1 36.59 ? N4 N17 401 A 1 HETATM 13 C C2 N17 . . . B 2 -16.512 7.319 -22.082 1 35.78 ? C2 N17 401 A 1 HETATM 14 C C1 N17 . . . B 2 -16.28 5.861 -22.365 1 46.46 ? C1 N17 401 A 1 HETATM 15 N N2 N17 . . . B 2 -14.198 10.549 -27.122 1 32.26 ? N2 N17 401 A 1 HETATM 16 C C10 N17 . . . B 2 -13.537 10.366 -28.302 1 32.48 ? C10 N17 401 A 1 HETATM 17 C C20 N17 . . . B 2 -12.179 10.647 -28.447 1 29.29 ? C20 N17 401 A 1 HETATM 18 C C19 N17 . . . B 2 -11.525 10.431 -29.658 1 30.09 ? C19 N17 401 A 1 HETATM 19 C C13 N17 . . . B 2 -12.225 9.914 -30.741 1 30.42 ? C13 N17 401 A 1 HETATM 20 C C12 N17 . . . B 2 -13.569 9.596 -30.598 1 29.84 ? C12 N17 401 A 1 HETATM 21 C C11 N17 . . . B 2 -14.219 9.822 -29.387 1 33.06 ? C11 N17 401 A 1 HETATM 22 O O2 N17 . . . B 2 -11.592 9.674 -31.931 1 31.26 ? O2 N17 401 A 1 HETATM 23 C C14 N17 . . . B 2 -11.144 10.667 -32.759 1 29.45 ? C14 N17 401 A 1 HETATM 24 C C18 N17 . . . B 2 -11.721 11.933 -32.753 1 29.98 ? C18 N17 401 A 1 HETATM 25 C C17 N17 . . . B 2 -11.226 12.907 -33.612 1 26.54 ? C17 N17 401 A 1 HETATM 26 N N3 N17 . . . B 2 -10.213 12.626 -34.447 1 31.9 ? N3 N17 401 A 1 HETATM 27 C C16 N17 . . . B 2 -9.644 11.417 -34.477 1 30.87 ? C16 N17 401 A 1 HETATM 28 C C15 N17 . . . B 2 -10.094 10.403 -33.632 1 29.51 ? C15 N17 401 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #