data_5ELG # _model_server_result.job_id 1XQodaDbtQbRhQ6jHbQpTw _model_server_result.datetime_utc '2024-11-30 02:35:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5elg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 5ELG # _exptl.entry_id 5ELG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5ELG _cell.length_a 63.92 _cell.length_b 63.92 _cell.length_c 266.26 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5ELG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5ELG _atom_sites.fract_transf_matrix[1][1] 0.015645 _atom_sites.fract_transf_matrix[1][2] 0.009032 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018065 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003756 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 301 1 GOL GOL . C 3 GSH A 1 302 2 GSH GSH . D 2 GOL A 1 303 4 GOL GOL . E 2 GOL A 1 304 6 GOL GOL . F 2 GOL A 1 305 3 GOL GOL . G 2 GOL A 1 306 5 GOL GOL . H 4 HOH A 1 401 219 HOH HOH . H 4 HOH A 2 402 247 HOH HOH . H 4 HOH A 3 403 176 HOH HOH . H 4 HOH A 4 404 244 HOH HOH . H 4 HOH A 5 405 78 HOH HOH . H 4 HOH A 6 406 58 HOH HOH . H 4 HOH A 7 407 169 HOH HOH . H 4 HOH A 8 408 251 HOH HOH . H 4 HOH A 9 409 48 HOH HOH . H 4 HOH A 10 410 83 HOH HOH . H 4 HOH A 11 411 274 HOH HOH . H 4 HOH A 12 412 275 HOH HOH . H 4 HOH A 13 413 220 HOH HOH . H 4 HOH A 14 414 77 HOH HOH . H 4 HOH A 15 415 218 HOH HOH . H 4 HOH A 16 416 196 HOH HOH . H 4 HOH A 17 417 179 HOH HOH . H 4 HOH A 18 418 224 HOH HOH . H 4 HOH A 19 419 158 HOH HOH . H 4 HOH A 20 420 205 HOH HOH . H 4 HOH A 21 421 202 HOH HOH . H 4 HOH A 22 422 155 HOH HOH . H 4 HOH A 23 423 28 HOH HOH . H 4 HOH A 24 424 203 HOH HOH . H 4 HOH A 25 425 47 HOH HOH . H 4 HOH A 26 426 38 HOH HOH . H 4 HOH A 27 427 135 HOH HOH . H 4 HOH A 28 428 200 HOH HOH . H 4 HOH A 29 429 11 HOH HOH . H 4 HOH A 30 430 132 HOH HOH . H 4 HOH A 31 431 214 HOH HOH . H 4 HOH A 32 432 260 HOH HOH . H 4 HOH A 33 433 13 HOH HOH . H 4 HOH A 34 434 222 HOH HOH . H 4 HOH A 35 435 139 HOH HOH . H 4 HOH A 36 436 231 HOH HOH . H 4 HOH A 37 437 86 HOH HOH . H 4 HOH A 38 438 115 HOH HOH . H 4 HOH A 39 439 75 HOH HOH . H 4 HOH A 40 440 141 HOH HOH . H 4 HOH A 41 441 145 HOH HOH . H 4 HOH A 42 442 33 HOH HOH . H 4 HOH A 43 443 201 HOH HOH . H 4 HOH A 44 444 211 HOH HOH . H 4 HOH A 45 445 55 HOH HOH . H 4 HOH A 46 446 9 HOH HOH . H 4 HOH A 47 447 53 HOH HOH . H 4 HOH A 48 448 138 HOH HOH . H 4 HOH A 49 449 52 HOH HOH . H 4 HOH A 50 450 114 HOH HOH . H 4 HOH A 51 451 122 HOH HOH . H 4 HOH A 52 452 144 HOH HOH . H 4 HOH A 53 453 21 HOH HOH . H 4 HOH A 54 454 140 HOH HOH . H 4 HOH A 55 455 221 HOH HOH . H 4 HOH A 56 456 71 HOH HOH . H 4 HOH A 57 457 152 HOH HOH . H 4 HOH A 58 458 4 HOH HOH . H 4 HOH A 59 459 228 HOH HOH . H 4 HOH A 60 460 267 HOH HOH . H 4 HOH A 61 461 35 HOH HOH . H 4 HOH A 62 462 29 HOH HOH . H 4 HOH A 63 463 126 HOH HOH . H 4 HOH A 64 464 204 HOH HOH . H 4 HOH A 65 465 68 HOH HOH . H 4 HOH A 66 466 6 HOH HOH . H 4 HOH A 67 467 61 HOH HOH . H 4 HOH A 68 468 63 HOH HOH . H 4 HOH A 69 469 43 HOH HOH . H 4 HOH A 70 470 89 HOH HOH . H 4 HOH A 71 471 112 HOH HOH . H 4 HOH A 72 472 60 HOH HOH . H 4 HOH A 73 473 104 HOH HOH . H 4 HOH A 74 474 57 HOH HOH . H 4 HOH A 75 475 27 HOH HOH . H 4 HOH A 76 476 5 HOH HOH . H 4 HOH A 77 477 73 HOH HOH . H 4 HOH A 78 478 100 HOH HOH . H 4 HOH A 79 479 253 HOH HOH . H 4 HOH A 80 480 137 HOH HOH . H 4 HOH A 81 481 31 HOH HOH . H 4 HOH A 82 482 238 HOH HOH . H 4 HOH A 83 483 67 HOH HOH . H 4 HOH A 84 484 106 HOH HOH . H 4 HOH A 85 485 84 HOH HOH . H 4 HOH A 86 486 94 HOH HOH . H 4 HOH A 87 487 206 HOH HOH . H 4 HOH A 88 488 65 HOH HOH . H 4 HOH A 89 489 40 HOH HOH . H 4 HOH A 90 490 16 HOH HOH . H 4 HOH A 91 491 41 HOH HOH . H 4 HOH A 92 492 39 HOH HOH . H 4 HOH A 93 493 109 HOH HOH . H 4 HOH A 94 494 151 HOH HOH . H 4 HOH A 95 495 25 HOH HOH . H 4 HOH A 96 496 7 HOH HOH . H 4 HOH A 97 497 8 HOH HOH . H 4 HOH A 98 498 197 HOH HOH . H 4 HOH A 99 499 248 HOH HOH . H 4 HOH A 100 500 32 HOH HOH . H 4 HOH A 101 501 182 HOH HOH . H 4 HOH A 102 502 240 HOH HOH . H 4 HOH A 103 503 250 HOH HOH . H 4 HOH A 104 504 167 HOH HOH . H 4 HOH A 105 505 62 HOH HOH . H 4 HOH A 106 506 56 HOH HOH . H 4 HOH A 107 507 24 HOH HOH . H 4 HOH A 108 508 1 HOH HOH . H 4 HOH A 109 509 36 HOH HOH . H 4 HOH A 110 510 99 HOH HOH . H 4 HOH A 111 511 234 HOH HOH . H 4 HOH A 112 512 37 HOH HOH . H 4 HOH A 113 513 20 HOH HOH . H 4 HOH A 114 514 142 HOH HOH . H 4 HOH A 115 515 173 HOH HOH . H 4 HOH A 116 516 129 HOH HOH . H 4 HOH A 117 517 90 HOH HOH . H 4 HOH A 118 518 172 HOH HOH . H 4 HOH A 119 519 186 HOH HOH . H 4 HOH A 120 520 26 HOH HOH . H 4 HOH A 121 521 252 HOH HOH . H 4 HOH A 122 522 150 HOH HOH . H 4 HOH A 123 523 153 HOH HOH . H 4 HOH A 124 524 87 HOH HOH . H 4 HOH A 125 525 183 HOH HOH . H 4 HOH A 126 526 177 HOH HOH . H 4 HOH A 127 527 34 HOH HOH . H 4 HOH A 128 528 170 HOH HOH . H 4 HOH A 129 529 199 HOH HOH . H 4 HOH A 130 530 118 HOH HOH . H 4 HOH A 131 531 134 HOH HOH . H 4 HOH A 132 532 66 HOH HOH . H 4 HOH A 133 533 216 HOH HOH . H 4 HOH A 134 534 44 HOH HOH . H 4 HOH A 135 535 59 HOH HOH . H 4 HOH A 136 536 273 HOH HOH . H 4 HOH A 137 537 148 HOH HOH . H 4 HOH A 138 538 227 HOH HOH . H 4 HOH A 139 539 259 HOH HOH . H 4 HOH A 140 540 119 HOH HOH . H 4 HOH A 141 541 249 HOH HOH . H 4 HOH A 142 542 102 HOH HOH . H 4 HOH A 143 543 208 HOH HOH . H 4 HOH A 144 544 180 HOH HOH . H 4 HOH A 145 545 17 HOH HOH . H 4 HOH A 146 546 136 HOH HOH . H 4 HOH A 147 547 45 HOH HOH . H 4 HOH A 148 548 46 HOH HOH . H 4 HOH A 149 549 198 HOH HOH . H 4 HOH A 150 550 97 HOH HOH . H 4 HOH A 151 551 10 HOH HOH . H 4 HOH A 152 552 125 HOH HOH . H 4 HOH A 153 553 95 HOH HOH . H 4 HOH A 154 554 12 HOH HOH . H 4 HOH A 155 555 30 HOH HOH . H 4 HOH A 156 556 110 HOH HOH . H 4 HOH A 157 557 166 HOH HOH . H 4 HOH A 158 558 70 HOH HOH . H 4 HOH A 159 559 163 HOH HOH . H 4 HOH A 160 560 133 HOH HOH . H 4 HOH A 161 561 49 HOH HOH . H 4 HOH A 162 562 23 HOH HOH . H 4 HOH A 163 563 64 HOH HOH . H 4 HOH A 164 564 209 HOH HOH . H 4 HOH A 165 565 226 HOH HOH . H 4 HOH A 166 566 156 HOH HOH . H 4 HOH A 167 567 72 HOH HOH . H 4 HOH A 168 568 181 HOH HOH . H 4 HOH A 169 569 74 HOH HOH . H 4 HOH A 170 570 51 HOH HOH . H 4 HOH A 171 571 195 HOH HOH . H 4 HOH A 172 572 174 HOH HOH . H 4 HOH A 173 573 212 HOH HOH . H 4 HOH A 174 574 121 HOH HOH . H 4 HOH A 175 575 187 HOH HOH . H 4 HOH A 176 576 242 HOH HOH . H 4 HOH A 177 577 128 HOH HOH . H 4 HOH A 178 578 103 HOH HOH . H 4 HOH A 179 579 191 HOH HOH . H 4 HOH A 180 580 225 HOH HOH . H 4 HOH A 181 581 3 HOH HOH . H 4 HOH A 182 582 168 HOH HOH . H 4 HOH A 183 583 188 HOH HOH . H 4 HOH A 184 584 184 HOH HOH . H 4 HOH A 185 585 243 HOH HOH . H 4 HOH A 186 586 164 HOH HOH . H 4 HOH A 187 587 117 HOH HOH . H 4 HOH A 188 588 271 HOH HOH . H 4 HOH A 189 589 265 HOH HOH . H 4 HOH A 190 590 50 HOH HOH . H 4 HOH A 191 591 266 HOH HOH . H 4 HOH A 192 592 147 HOH HOH . H 4 HOH A 193 593 233 HOH HOH . H 4 HOH A 194 594 257 HOH HOH . H 4 HOH A 195 595 131 HOH HOH . H 4 HOH A 196 596 85 HOH HOH . H 4 HOH A 197 597 91 HOH HOH . H 4 HOH A 198 598 223 HOH HOH . H 4 HOH A 199 599 116 HOH HOH . H 4 HOH A 200 600 207 HOH HOH . H 4 HOH A 201 601 160 HOH HOH . H 4 HOH A 202 602 258 HOH HOH . H 4 HOH A 203 603 192 HOH HOH . H 4 HOH A 204 604 272 HOH HOH . H 4 HOH A 205 605 254 HOH HOH . H 4 HOH A 206 606 270 HOH HOH . H 4 HOH A 207 607 232 HOH HOH . H 4 HOH A 208 608 262 HOH HOH . H 4 HOH A 209 609 261 HOH HOH . H 4 HOH A 210 610 217 HOH HOH . H 4 HOH A 211 611 162 HOH HOH . H 4 HOH A 212 612 255 HOH HOH . H 4 HOH A 213 613 276 HOH HOH . H 4 HOH A 214 614 159 HOH HOH . H 4 HOH A 215 615 96 HOH HOH . H 4 HOH A 216 616 239 HOH HOH . H 4 HOH A 217 617 236 HOH HOH . H 4 HOH A 218 618 237 HOH HOH . H 4 HOH A 219 619 88 HOH HOH . H 4 HOH A 220 620 178 HOH HOH . H 4 HOH A 221 621 229 HOH HOH . H 4 HOH A 222 622 230 HOH HOH . H 4 HOH A 223 623 263 HOH HOH . H 4 HOH A 224 624 194 HOH HOH . H 4 HOH A 225 625 189 HOH HOH . H 4 HOH A 226 626 264 HOH HOH . H 4 HOH A 227 627 277 HOH HOH . H 4 HOH A 228 628 69 HOH HOH . H 4 HOH A 229 629 82 HOH HOH . H 4 HOH A 230 630 76 HOH HOH . H 4 HOH A 231 631 193 HOH HOH . H 4 HOH A 232 632 210 HOH HOH . H 4 HOH A 233 633 81 HOH HOH . H 4 HOH A 234 634 235 HOH HOH . H 4 HOH A 235 635 54 HOH HOH . H 4 HOH A 236 636 213 HOH HOH . H 4 HOH A 237 637 241 HOH HOH . H 4 HOH A 238 638 111 HOH HOH . H 4 HOH A 239 639 268 HOH HOH . H 4 HOH A 240 640 215 HOH HOH . H 4 HOH A 241 641 269 HOH HOH . H 4 HOH A 242 642 256 HOH HOH . H 4 HOH A 243 643 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 -26.023 30.532 -18.494 1 85.54 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 2 -26.69 31.749 -18.152 1 89.49 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 2 -25.225 30.085 -17.267 1 83.79 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 2 -25.813 28.941 -16.578 1 71.16 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 2 -23.795 29.749 -17.681 1 79.53 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 2 -23.224 28.899 -16.685 1 63.13 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #