data_5EM0 # _model_server_result.job_id 7wXjSE3q-iPd1HOQwJG6cQ _model_server_result.datetime_utc '2025-03-09 02:34:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5em0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5EM0 # _exptl.entry_id 5EM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5EM0 _cell.length_a 58.107 _cell.length_b 59.18 _cell.length_c 32.578 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5EM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 95 1_555 A SG CYS 119 A CYS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? covale ? covale1 A C MET 14 A MET 12 1_555 A N CME 15 A CME 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C CME 15 A CME 13 1_555 A N ASP 16 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 C NA NA . A NA 202 1_555 D O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 C NA NA . A NA 202 1_555 D O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 C NA NA . A NA 202 1_555 D O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc4 C NA NA . A NA 202 1_555 D O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc5 C NA NA . A NA 202 1_555 D O HOH . A HOH 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc6 C NA NA . A NA 202 1_555 D O HOH . A HOH 512 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 104 n n N1 C6 EPE sing 105 n n N1 C9 EPE sing 106 n n C2 C3 EPE sing 107 n n C2 H21 EPE sing 108 n n C2 H22 EPE sing 109 n n C3 N4 EPE sing 110 n n C3 H31 EPE sing 111 n n C3 H32 EPE sing 112 n n N4 C5 EPE sing 113 n n N4 C7 EPE sing 114 n n C5 C6 EPE sing 115 n n C5 H51 EPE sing 116 n n C5 H52 EPE sing 117 n n C6 H61 EPE sing 118 n n C6 H62 EPE sing 119 n n C7 C8 EPE sing 120 n n C7 H71 EPE sing 121 n n C7 H72 EPE sing 122 n n C8 O8 EPE sing 123 n n C8 H81 EPE sing 124 n n C8 H82 EPE sing 125 n n O8 HO8 EPE sing 126 n n C9 C10 EPE sing 127 n n C9 H91 EPE sing 128 n n C9 H92 EPE sing 129 n n C10 S EPE sing 130 n n C10 H101 EPE sing 131 n n C10 H102 EPE sing 132 n n S O1S EPE doub 133 n n S O2S EPE doub 134 n n S O3S EPE sing 135 n n O3S HOS3 EPE sing 136 n n # _atom_sites.entry_id 5EM0 _atom_sites.fract_transf_matrix[1][1] 0.01721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030696 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 201 1 EPE EPE . C 3 NA A 1 202 1 NA NA . D 4 HOH A 1 301 75 HOH HOH . D 4 HOH A 2 302 142 HOH HOH . D 4 HOH A 3 303 70 HOH HOH . D 4 HOH A 4 304 122 HOH HOH . D 4 HOH A 5 305 257 HOH HOH . D 4 HOH A 6 306 77 HOH HOH . D 4 HOH A 7 307 103 HOH HOH . D 4 HOH A 8 308 151 HOH HOH . D 4 HOH A 9 309 146 HOH HOH . D 4 HOH A 10 310 226 HOH HOH . D 4 HOH A 11 311 116 HOH HOH . D 4 HOH A 12 312 192 HOH HOH . D 4 HOH A 13 313 36 HOH HOH . D 4 HOH A 14 314 89 HOH HOH . D 4 HOH A 15 315 60 HOH HOH . D 4 HOH A 16 316 119 HOH HOH . D 4 HOH A 17 317 230 HOH HOH . D 4 HOH A 18 318 210 HOH HOH . D 4 HOH A 19 319 144 HOH HOH . D 4 HOH A 20 320 95 HOH HOH . D 4 HOH A 21 321 93 HOH HOH . D 4 HOH A 22 322 81 HOH HOH . D 4 HOH A 23 323 252 HOH HOH . D 4 HOH A 24 324 16 HOH HOH . D 4 HOH A 25 325 50 HOH HOH . D 4 HOH A 26 326 22 HOH HOH . D 4 HOH A 27 327 20 HOH HOH . D 4 HOH A 28 328 57 HOH HOH . D 4 HOH A 29 329 153 HOH HOH . D 4 HOH A 30 330 190 HOH HOH . D 4 HOH A 31 331 34 HOH HOH . D 4 HOH A 32 332 182 HOH HOH . D 4 HOH A 33 333 214 HOH HOH . D 4 HOH A 34 334 100 HOH HOH . D 4 HOH A 35 335 174 HOH HOH . D 4 HOH A 36 336 33 HOH HOH . D 4 HOH A 37 337 154 HOH HOH . D 4 HOH A 38 338 55 HOH HOH . D 4 HOH A 39 339 10 HOH HOH . D 4 HOH A 40 340 115 HOH HOH . D 4 HOH A 41 341 126 HOH HOH . D 4 HOH A 42 342 15 HOH HOH . D 4 HOH A 43 343 13 HOH HOH . D 4 HOH A 44 344 49 HOH HOH . D 4 HOH A 45 345 1 HOH HOH . D 4 HOH A 46 346 187 HOH HOH . D 4 HOH A 47 347 68 HOH HOH . D 4 HOH A 48 348 66 HOH HOH . D 4 HOH A 49 349 148 HOH HOH . D 4 HOH A 50 350 136 HOH HOH . D 4 HOH A 51 351 18 HOH HOH . D 4 HOH A 52 352 27 HOH HOH . D 4 HOH A 53 353 61 HOH HOH . D 4 HOH A 54 354 44 HOH HOH . D 4 HOH A 55 355 175 HOH HOH . D 4 HOH A 56 356 64 HOH HOH . D 4 HOH A 57 357 48 HOH HOH . D 4 HOH A 58 358 225 HOH HOH . D 4 HOH A 59 359 71 HOH HOH . D 4 HOH A 60 360 245 HOH HOH . D 4 HOH A 61 361 229 HOH HOH . D 4 HOH A 62 362 194 HOH HOH . D 4 HOH A 63 363 107 HOH HOH . D 4 HOH A 64 364 30 HOH HOH . D 4 HOH A 65 365 39 HOH HOH . D 4 HOH A 66 366 47 HOH HOH . D 4 HOH A 67 367 248 HOH HOH . D 4 HOH A 68 368 78 HOH HOH . D 4 HOH A 69 369 25 HOH HOH . D 4 HOH A 70 370 5 HOH HOH . D 4 HOH A 71 371 62 HOH HOH . D 4 HOH A 72 372 11 HOH HOH . D 4 HOH A 73 373 219 HOH HOH . D 4 HOH A 74 374 73 HOH HOH . D 4 HOH A 75 375 88 HOH HOH . D 4 HOH A 76 376 53 HOH HOH . D 4 HOH A 77 377 211 HOH HOH . D 4 HOH A 78 378 21 HOH HOH . D 4 HOH A 79 379 113 HOH HOH . D 4 HOH A 80 380 3 HOH HOH . D 4 HOH A 81 381 102 HOH HOH . D 4 HOH A 82 382 9 HOH HOH . D 4 HOH A 83 383 43 HOH HOH . D 4 HOH A 84 384 74 HOH HOH . D 4 HOH A 85 385 59 HOH HOH . D 4 HOH A 86 386 108 HOH HOH . D 4 HOH A 87 387 2 HOH HOH . D 4 HOH A 88 388 106 HOH HOH . D 4 HOH A 89 389 209 HOH HOH . D 4 HOH A 90 390 31 HOH HOH . D 4 HOH A 91 391 87 HOH HOH . D 4 HOH A 92 392 242 HOH HOH . D 4 HOH A 93 393 127 HOH HOH . D 4 HOH A 94 394 28 HOH HOH . D 4 HOH A 95 395 94 HOH HOH . D 4 HOH A 96 396 76 HOH HOH . D 4 HOH A 97 397 79 HOH HOH . D 4 HOH A 98 398 228 HOH HOH . D 4 HOH A 99 399 147 HOH HOH . D 4 HOH A 100 400 223 HOH HOH . D 4 HOH A 101 401 237 HOH HOH . D 4 HOH A 102 402 29 HOH HOH . D 4 HOH A 103 403 197 HOH HOH . D 4 HOH A 104 404 181 HOH HOH . D 4 HOH A 105 405 140 HOH HOH . D 4 HOH A 106 406 45 HOH HOH . D 4 HOH A 107 407 99 HOH HOH . D 4 HOH A 108 408 69 HOH HOH . D 4 HOH A 109 409 143 HOH HOH . D 4 HOH A 110 410 260 HOH HOH . D 4 HOH A 111 411 118 HOH HOH . D 4 HOH A 112 412 243 HOH HOH . D 4 HOH A 113 413 7 HOH HOH . D 4 HOH A 114 414 24 HOH HOH . D 4 HOH A 115 415 65 HOH HOH . D 4 HOH A 116 416 80 HOH HOH . D 4 HOH A 117 417 38 HOH HOH . D 4 HOH A 118 418 6 HOH HOH . D 4 HOH A 119 419 212 HOH HOH . D 4 HOH A 120 420 117 HOH HOH . D 4 HOH A 121 421 8 HOH HOH . D 4 HOH A 122 422 19 HOH HOH . D 4 HOH A 123 423 112 HOH HOH . D 4 HOH A 124 424 125 HOH HOH . D 4 HOH A 125 425 4 HOH HOH . D 4 HOH A 126 426 56 HOH HOH . D 4 HOH A 127 427 67 HOH HOH . D 4 HOH A 128 428 14 HOH HOH . D 4 HOH A 129 429 149 HOH HOH . D 4 HOH A 130 430 51 HOH HOH . D 4 HOH A 131 431 178 HOH HOH . D 4 HOH A 132 432 231 HOH HOH . D 4 HOH A 133 433 52 HOH HOH . D 4 HOH A 134 434 17 HOH HOH . D 4 HOH A 135 435 138 HOH HOH . D 4 HOH A 136 436 54 HOH HOH . D 4 HOH A 137 437 12 HOH HOH . D 4 HOH A 138 438 233 HOH HOH . D 4 HOH A 139 439 46 HOH HOH . D 4 HOH A 140 440 157 HOH HOH . D 4 HOH A 141 441 200 HOH HOH . D 4 HOH A 142 442 222 HOH HOH . D 4 HOH A 143 443 244 HOH HOH . D 4 HOH A 144 444 186 HOH HOH . D 4 HOH A 145 445 193 HOH HOH . D 4 HOH A 146 446 234 HOH HOH . D 4 HOH A 147 447 40 HOH HOH . D 4 HOH A 148 448 129 HOH HOH . D 4 HOH A 149 449 238 HOH HOH . D 4 HOH A 150 450 254 HOH HOH . D 4 HOH A 151 451 253 HOH HOH . D 4 HOH A 152 452 131 HOH HOH . D 4 HOH A 153 453 255 HOH HOH . D 4 HOH A 154 454 84 HOH HOH . D 4 HOH A 155 455 72 HOH HOH . D 4 HOH A 156 456 199 HOH HOH . D 4 HOH A 157 457 58 HOH HOH . D 4 HOH A 158 458 132 HOH HOH . D 4 HOH A 159 459 139 HOH HOH . D 4 HOH A 160 460 179 HOH HOH . D 4 HOH A 161 461 250 HOH HOH . D 4 HOH A 162 462 82 HOH HOH . D 4 HOH A 163 463 85 HOH HOH . D 4 HOH A 164 464 41 HOH HOH . D 4 HOH A 165 465 189 HOH HOH . D 4 HOH A 166 466 104 HOH HOH . D 4 HOH A 167 467 249 HOH HOH . D 4 HOH A 168 468 232 HOH HOH . D 4 HOH A 169 469 92 HOH HOH . D 4 HOH A 170 470 240 HOH HOH . D 4 HOH A 171 471 109 HOH HOH . D 4 HOH A 172 472 124 HOH HOH . D 4 HOH A 173 473 227 HOH HOH . D 4 HOH A 174 474 101 HOH HOH . D 4 HOH A 175 475 37 HOH HOH . D 4 HOH A 176 476 42 HOH HOH . D 4 HOH A 177 477 32 HOH HOH . D 4 HOH A 178 478 195 HOH HOH . D 4 HOH A 179 479 23 HOH HOH . D 4 HOH A 180 480 185 HOH HOH . D 4 HOH A 181 481 184 HOH HOH . D 4 HOH A 182 482 224 HOH HOH . D 4 HOH A 183 483 96 HOH HOH . D 4 HOH A 184 484 105 HOH HOH . D 4 HOH A 185 485 128 HOH HOH . D 4 HOH A 186 486 155 HOH HOH . D 4 HOH A 187 487 180 HOH HOH . D 4 HOH A 188 488 259 HOH HOH . D 4 HOH A 189 489 63 HOH HOH . D 4 HOH A 190 490 156 HOH HOH . D 4 HOH A 191 491 256 HOH HOH . D 4 HOH A 192 492 35 HOH HOH . D 4 HOH A 193 493 150 HOH HOH . D 4 HOH A 194 494 130 HOH HOH . D 4 HOH A 195 495 120 HOH HOH . D 4 HOH A 196 496 90 HOH HOH . D 4 HOH A 197 497 97 HOH HOH . D 4 HOH A 198 498 236 HOH HOH . D 4 HOH A 199 499 145 HOH HOH . D 4 HOH A 200 500 188 HOH HOH . D 4 HOH A 201 501 114 HOH HOH . D 4 HOH A 202 502 110 HOH HOH . D 4 HOH A 203 503 91 HOH HOH . D 4 HOH A 204 504 246 HOH HOH . D 4 HOH A 205 505 247 HOH HOH . D 4 HOH A 206 506 98 HOH HOH . D 4 HOH A 207 507 213 HOH HOH . D 4 HOH A 208 508 123 HOH HOH . D 4 HOH A 209 509 198 HOH HOH . D 4 HOH A 210 510 258 HOH HOH . D 4 HOH A 211 511 261 HOH HOH . D 4 HOH A 212 512 251 HOH HOH . D 4 HOH A 213 513 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 21.695 -10.76 11.513 0.8 26.96 ? N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . B 2 21.204 -9.408 11.264 0.8 26.77 ? C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . B 2 21.639 -8.516 12.429 0.8 30.12 ? C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . B 2 21.032 -9.02 13.648 0.8 32.57 ? N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . B 2 21.121 -10.446 13.942 0.8 31.54 ? C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . B 2 21.922 -11.214 12.887 0.8 30.55 ? C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . B 2 20.429 -8.029 14.553 0.8 36.78 ? C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . B 2 20.58 -8.459 16.005 0.8 37.03 ? C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . B 2 19.654 -9.51 16.29 0.8 40.46 ? O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . B 2 21.816 -11.804 10.465 0.8 24.55 ? C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . B 2 22.393 -11.345 9.12 0.8 21.63 ? C10 EPE 201 A 1 HETATM 12 S S EPE . . . B 2 21.992 -12.277 7.773 0.8 18.94 ? S EPE 201 A 1 HETATM 13 O O1S EPE . . . B 2 20.64 -11.981 7.246 0.8 20.66 ? O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . B 2 23.079 -11.96 6.79 0.8 21.82 ? O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . B 2 22.202 -13.693 8.121 0.8 23.03 ? O3S EPE 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #