data_5EM3
#
_model_server_result.job_id            cFA_Xt44eOwktpEW47CUFQ 
_model_server_result.datetime_utc      '2024-10-19 17:19:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5em3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":804}' 
#
_entry.id    5EM3 
#
_exptl.entry_id    5EM3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5EM3 
_cell.length_a            60.14 
_cell.length_b            60.14 
_cell.length_c            63.22 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5EM3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 256 n n 
N O2 NO3 sing 257 n n 
N O3 NO3 sing 258 n n 
#
_atom_sites.entry_id                     5EM3 
_atom_sites.fract_transf_matrix[1][1]    0.016628 
_atom_sites.fract_transf_matrix[1][2]    0.0096 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0192 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5Q0 A 1 801 1 5Q0 PDB . 
C 2 5Q0 A 1 802 2 5Q0 PDB . 
D 3 NO3 A 1 803 1 NO3 NO3 . 
E 3 NO3 A 1 804 2 NO3 NO3 . 
F 4 HOH A 1 901 1 HOH HOH . 
F 4 HOH A 2 902 83 HOH HOH . 
F 4 HOH A 3 903 187 HOH HOH . 
F 4 HOH A 4 904 104 HOH HOH . 
F 4 HOH A 5 905 153 HOH HOH . 
F 4 HOH A 6 906 64 HOH HOH . 
F 4 HOH A 7 907 53 HOH HOH . 
F 4 HOH A 8 908 60 HOH HOH . 
F 4 HOH A 9 909 160 HOH HOH . 
F 4 HOH A 10 910 52 HOH HOH . 
F 4 HOH A 11 911 57 HOH HOH . 
F 4 HOH A 12 912 19 HOH HOH . 
F 4 HOH A 13 913 12 HOH HOH . 
F 4 HOH A 14 914 15 HOH HOH . 
F 4 HOH A 15 915 130 HOH HOH . 
F 4 HOH A 16 916 141 HOH HOH . 
F 4 HOH A 17 917 72 HOH HOH . 
F 4 HOH A 18 918 218 HOH HOH . 
F 4 HOH A 19 919 184 HOH HOH . 
F 4 HOH A 20 920 41 HOH HOH . 
F 4 HOH A 21 921 142 HOH HOH . 
F 4 HOH A 22 922 31 HOH HOH . 
F 4 HOH A 23 923 14 HOH HOH . 
F 4 HOH A 24 924 137 HOH HOH . 
F 4 HOH A 25 925 76 HOH HOH . 
F 4 HOH A 26 926 10 HOH HOH . 
F 4 HOH A 27 927 132 HOH HOH . 
F 4 HOH A 28 928 89 HOH HOH . 
F 4 HOH A 29 929 152 HOH HOH . 
F 4 HOH A 30 930 110 HOH HOH . 
F 4 HOH A 31 931 134 HOH HOH . 
F 4 HOH A 32 932 36 HOH HOH . 
F 4 HOH A 33 933 95 HOH HOH . 
F 4 HOH A 34 934 117 HOH HOH . 
F 4 HOH A 35 935 114 HOH HOH . 
F 4 HOH A 36 936 96 HOH HOH . 
F 4 HOH A 37 937 35 HOH HOH . 
F 4 HOH A 38 938 214 HOH HOH . 
F 4 HOH A 39 939 125 HOH HOH . 
F 4 HOH A 40 940 5 HOH HOH . 
F 4 HOH A 41 941 163 HOH HOH . 
F 4 HOH A 42 942 171 HOH HOH . 
F 4 HOH A 43 943 84 HOH HOH . 
F 4 HOH A 44 944 55 HOH HOH . 
F 4 HOH A 45 945 82 HOH HOH . 
F 4 HOH A 46 946 32 HOH HOH . 
F 4 HOH A 47 947 54 HOH HOH . 
F 4 HOH A 48 948 33 HOH HOH . 
F 4 HOH A 49 949 25 HOH HOH . 
F 4 HOH A 50 950 29 HOH HOH . 
F 4 HOH A 51 951 28 HOH HOH . 
F 4 HOH A 52 952 129 HOH HOH . 
F 4 HOH A 53 953 42 HOH HOH . 
F 4 HOH A 54 954 37 HOH HOH . 
F 4 HOH A 55 955 22 HOH HOH . 
F 4 HOH A 56 956 9 HOH HOH . 
F 4 HOH A 57 957 58 HOH HOH . 
F 4 HOH A 58 958 24 HOH HOH . 
F 4 HOH A 59 959 81 HOH HOH . 
F 4 HOH A 60 960 7 HOH HOH . 
F 4 HOH A 61 961 44 HOH HOH . 
F 4 HOH A 62 962 127 HOH HOH . 
F 4 HOH A 63 963 106 HOH HOH . 
F 4 HOH A 64 964 6 HOH HOH . 
F 4 HOH A 65 965 16 HOH HOH . 
F 4 HOH A 66 966 180 HOH HOH . 
F 4 HOH A 67 967 2 HOH HOH . 
F 4 HOH A 68 968 46 HOH HOH . 
F 4 HOH A 69 969 8 HOH HOH . 
F 4 HOH A 70 970 109 HOH HOH . 
F 4 HOH A 71 971 119 HOH HOH . 
F 4 HOH A 72 972 140 HOH HOH . 
F 4 HOH A 73 973 17 HOH HOH . 
F 4 HOH A 74 974 80 HOH HOH . 
F 4 HOH A 75 975 75 HOH HOH . 
F 4 HOH A 76 976 102 HOH HOH . 
F 4 HOH A 77 977 21 HOH HOH . 
F 4 HOH A 78 978 30 HOH HOH . 
F 4 HOH A 79 979 164 HOH HOH . 
F 4 HOH A 80 980 13 HOH HOH . 
F 4 HOH A 81 981 56 HOH HOH . 
F 4 HOH A 82 982 131 HOH HOH . 
F 4 HOH A 83 983 61 HOH HOH . 
F 4 HOH A 84 984 216 HOH HOH . 
F 4 HOH A 85 985 45 HOH HOH . 
F 4 HOH A 86 986 99 HOH HOH . 
F 4 HOH A 87 987 11 HOH HOH . 
F 4 HOH A 88 988 169 HOH HOH . 
F 4 HOH A 89 989 105 HOH HOH . 
F 4 HOH A 90 990 66 HOH HOH . 
F 4 HOH A 91 991 74 HOH HOH . 
F 4 HOH A 92 992 91 HOH HOH . 
F 4 HOH A 93 993 39 HOH HOH . 
F 4 HOH A 94 994 51 HOH HOH . 
F 4 HOH A 95 995 3 HOH HOH . 
F 4 HOH A 96 996 121 HOH HOH . 
F 4 HOH A 97 997 65 HOH HOH . 
F 4 HOH A 98 998 94 HOH HOH . 
F 4 HOH A 99 999 59 HOH HOH . 
F 4 HOH A 100 1000 135 HOH HOH . 
F 4 HOH A 101 1001 20 HOH HOH . 
F 4 HOH A 102 1002 123 HOH HOH . 
F 4 HOH A 103 1003 100 HOH HOH . 
F 4 HOH A 104 1004 27 HOH HOH . 
F 4 HOH A 105 1005 103 HOH HOH . 
F 4 HOH A 106 1006 18 HOH HOH . 
F 4 HOH A 107 1007 165 HOH HOH . 
F 4 HOH A 108 1008 77 HOH HOH . 
F 4 HOH A 109 1009 143 HOH HOH . 
F 4 HOH A 110 1010 139 HOH HOH . 
F 4 HOH A 111 1011 107 HOH HOH . 
F 4 HOH A 112 1012 122 HOH HOH . 
F 4 HOH A 113 1013 120 HOH HOH . 
F 4 HOH A 114 1014 115 HOH HOH . 
F 4 HOH A 115 1015 68 HOH HOH . 
F 4 HOH A 116 1016 34 HOH HOH . 
F 4 HOH A 117 1017 49 HOH HOH . 
F 4 HOH A 118 1018 50 HOH HOH . 
F 4 HOH A 119 1019 69 HOH HOH . 
F 4 HOH A 120 1020 88 HOH HOH . 
F 4 HOH A 121 1021 203 HOH HOH . 
F 4 HOH A 122 1022 150 HOH HOH . 
F 4 HOH A 123 1023 215 HOH HOH . 
F 4 HOH A 124 1024 126 HOH HOH . 
F 4 HOH A 125 1025 97 HOH HOH . 
F 4 HOH A 126 1026 182 HOH HOH . 
F 4 HOH A 127 1027 154 HOH HOH . 
F 4 HOH A 128 1028 202 HOH HOH . 
F 4 HOH A 129 1029 144 HOH HOH . 
F 4 HOH A 130 1030 189 HOH HOH . 
F 4 HOH A 131 1031 62 HOH HOH . 
F 4 HOH A 132 1032 112 HOH HOH . 
F 4 HOH A 133 1033 73 HOH HOH . 
F 4 HOH A 134 1034 101 HOH HOH . 
F 4 HOH A 135 1035 63 HOH HOH . 
F 4 HOH A 136 1036 43 HOH HOH . 
F 4 HOH A 137 1037 147 HOH HOH . 
F 4 HOH A 138 1038 157 HOH HOH . 
F 4 HOH A 139 1039 71 HOH HOH . 
F 4 HOH A 140 1040 151 HOH HOH . 
F 4 HOH A 141 1041 78 HOH HOH . 
F 4 HOH A 142 1042 70 HOH HOH . 
F 4 HOH A 143 1043 207 HOH HOH . 
F 4 HOH A 144 1044 108 HOH HOH . 
F 4 HOH A 145 1045 162 HOH HOH . 
F 4 HOH A 146 1046 170 HOH HOH . 
F 4 HOH A 147 1047 185 HOH HOH . 
F 4 HOH A 148 1048 204 HOH HOH . 
F 4 HOH A 149 1049 136 HOH HOH . 
F 4 HOH A 150 1050 124 HOH HOH . 
F 4 HOH A 151 1051 86 HOH HOH . 
F 4 HOH A 152 1052 191 HOH HOH . 
F 4 HOH A 153 1053 92 HOH HOH . 
F 4 HOH A 154 1054 149 HOH HOH . 
F 4 HOH A 155 1055 79 HOH HOH . 
F 4 HOH A 156 1056 128 HOH HOH . 
F 4 HOH A 157 1057 40 HOH HOH . 
F 4 HOH A 158 1058 159 HOH HOH . 
F 4 HOH A 159 1059 145 HOH HOH . 
F 4 HOH A 160 1060 87 HOH HOH . 
F 4 HOH A 161 1061 26 HOH HOH . 
F 4 HOH A 162 1062 85 HOH HOH . 
F 4 HOH A 163 1063 93 HOH HOH . 
F 4 HOH A 164 1064 48 HOH HOH . 
F 4 HOH A 165 1065 113 HOH HOH . 
F 4 HOH A 166 1066 98 HOH HOH . 
F 4 HOH A 167 1067 111 HOH HOH . 
F 4 HOH A 168 1068 116 HOH HOH . 
F 4 HOH A 169 1069 67 HOH HOH . 
F 4 HOH A 170 1070 118 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . E 3 15.779 10.106 -8.344 1 30.92 ? N NO3 804 A 1 
HETATM 2 O O1 NO3 . . . E 3 17.109 10.596 -8.533 1 30.16 ? O1 NO3 804 A 1 
HETATM 3 O O2 NO3 . . . E 3 15.392 8.987 -8.904 1 30.46 ? O2 NO3 804 A 1 
HETATM 4 O O3 NO3 . . . E 3 14.977 10.722 -7.593 1 20.85 ? O3 NO3 804 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           458 
_model_server_stats.encode_time_ms          26 
_model_server_stats.element_count           4 
#